Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0562200-03
CDS Infomation	cds chromosome:IRGSP-1.0:8:28145834:28149227:-1 gene:Os08g0562200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:NAC DOMAIN-CONTAINING PROTEIN 40 description:Similar to CUC2. (Os08t0562200-02);Hypothetical conserved gene. (Os08t0562200-03)
Sequence	ATGAGCCACCCCTCGTCGTCGTCCTCCTCCGCTCCCCCGGCGGCGGCCGAGGCCACCTCC CTCGCACCGGGATTCCGGTTCCACCCGACGGATGAGGAGCTGGTGTCCTACTACCTGAAG CGGAAGGTCCATGGGCGGCCGCTCAAGGTGGACGCCATCGCGGAGGTGGACCTGTACAAG GTGGAGCCATGGGACCTCCCCGCCCGCTCCCGCCTCCGCAGCCGCGACTCCCAGTGGTAC TTCTTCAGCCGCCTCGACCGCAAGCACGCCAACCGCGCCCGCACCAACCGCGCCACCGCC GGCGGCTACTGGAAGACCACCGGCAAGGACAGGGAGGTCCGCAACGGCCCCACCACCGTC GGCATGAAGAAGACCCTCGTCTTCCACGCCGGCCGCGCCCCCAAGGGCGAGCGCACCAAC TGGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAGGATTCATTC GTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAGAACGGGGCTCAGTACGGA GCTCCTTTTGTTGAGGAGGAGTGGGAGGAGGATGACGAGGATGTTGGTTTGCTACCGGTG GAGGAGAAGGACAACTCTGATGACCAGGAAAAGGAAATTTCTGGTGCTATGGAGAAGGGC TATCTCCAGATGAGTGACCTCGTTCAGAACTTGGTTGATCAAAATGAGAATGGTACCATT GCCTTGCCAGTTTCTGACAATTCAAACAACAGCAACCATTCTGAAGACGTGGATGGAAAT TCAGGGGACATTTTAAGTGACCAAAACCTTGGGTCTAACTTTCTTCACCATGTTGAGCCT GTGGAGCAAAATGGCCTAGTGCTTAATGAAAATATGTTTTCTAGTGCCAATGCTGGAGAC CTTTTTAATATATCTAGCCCCAATGATGGATTCCTAGAACTGAAGGATTTTGCAGATATT GCAGATTTGGAGAATCCTTTAGCCAATGAATCCACCATCTGGCCTTCTGATGGTTGGCCC TGGAAATCAACTGATTCCATGGAGGCTGTGAATGGGGCTAGCAATGAATTTTCTCCCTTA GCTGGTGAACAGATATTCCAGCCAGAAGAATTGGAACAGTTGTTACAGTCACTGCAAGAA GACTCTCATATGGGTTCAACTATCTCTGATCCCCCACATTCATCTATAACAAATTTAGCT AAGCCAGAGGAAGATTGTCTAATGTTCTATGATGCACCCTTTGATTCTTCAATGTGTGAT GATGGTTTTAGACAGCTCAATGGATTTCTTGGCTCCCCATCGACCAATCTATCTGGTATT GACATGGTGGACGATGGTATGCCGTACTATGATGCGATGGATGATAACTTGTTTAATGAT CTTCTGAGCTCAGTACAGCCATCAGCTGGTAGCAGTTCCCATGCTTTTAGTGGGCCAGTC CTTACTCAAGAGGTCAACAATTCAACCTATACATATAGTCCAACTCAAAAGGTTTTAGAA CCTAATTTTGTAGTTGGTGCCCCATCATCTGCTAGGTTACCTGAAGCGGGTAGTCAGTTA AATTATGTTGTTTTACCAGGTAATATTACTATGGAGAAGTACCATAGGTCAATTATTATT TCCTGCTCTTTAGTGCTGATCCATCATGGAAAAAGAGCATTCTCAGCACTTTTTGGGCCA CTAATAATTAATCTTTTTTTTTTTGCAATGAGGAATTGTTCATTGTTGTATTTACTTGTC CTGATTGAGCAAGATTTAAGTATTACTAGATCATTTTTGTGGAGACACTCTTATCTTGCT CAATCAGTGCAGTGTTACACACAATTGGCATGTGATTTCTCATTGCCTGGCCATTAA

Peptide Sequence

PEP ID	Os08t0562200-03
PEP Infomation	pep chromosome:IRGSP-1.0:8:28145834:28149227:-1 gene:Os08g0562200 transcript:Os08t0562200-03 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:NAC DOMAIN-CONTAINING PROTEIN 40 description:Similar to CUC2. (Os08t0562200-02);Hypothetical conserved gene. (Os08t0562200-03)
Sequence	MSHPSSSSSSAPPAAAEATSLAPGFRFHPTDEELVSYYLKRKVHGRPLKVDAIAEVDLYK VEPWDLPARSRLRSRDSQWYFFSRLDRKHANRARTNRATAGGYWKTTGKDREVRNGPTTV GMKKTLVFHAGRAPKGERTNWVMHEYRLDGQTTIPPQDSFVVCRIFQKAGPGPQNGAQYG APFVEEEWEEDDEDVGLLPVEEKDNSDDQEKEISGAMEKGYLQMSDLVQNLVDQNENGTI ALPVSDNSNNSNHSEDVDGNSGDILSDQNLGSNFLHHVEPVEQNGLVLNENMFSSANAGD LFNISSPNDGFLELKDFADIADLENPLANESTIWPSDGWPWKSTDSMEAVNGASNEFSPL AGEQIFQPEELEQLLQSLQEDSHMGSTISDPPHSSITNLAKPEEDCLMFYDAPFDSSMCD DGFRQLNGFLGSPSTNLSGIDMVDDGMPYYDAMDDNLFNDLLSSVQPSAGSSSHAFSGPV LTQEVNNSTYTYSPTQKVLEPNFVVGAPSSARLPEAGSQLNYVVLPGNITMEKYHRSIII SCSLVLIHHGKRAFSALFGPLIINLFFFAMRNCSLLYLLVLIEQDLSITRSFLWRHSYLA QSVQCYTQLACDFSLPGH

Transcript Sequence

Transcript ID	Os08t0562200-03
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:28145834:28149227:-1 gene:Os08g0562200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:NAC DOMAIN-CONTAINING PROTEIN 40 description:Similar to CUC2. (Os08t0562200-02);Hypothetical conserved gene. (Os08t0562200-03)
Sequence	GCTGCGTTTCGTTTCTTCCCCAAAAACCAAGGGGGAAGGCAAACTTTCCCCAAATCTCAA CCCCAATCCCAATCTAGGGCACATGAGCCACCCCTCGTCGTCGTCCTCCTCCGCTCCCCC GGCGGCGGCCGAGGCCACCTCCCTCGCACCGGGATTCCGGTTCCACCCGACGGATGAGGA GCTGGTGTCCTACTACCTGAAGCGGAAGGTCCATGGGCGGCCGCTCAAGGTGGACGCCAT CGCGGAGGTGGACCTGTACAAGGTGGAGCCATGGGACCTCCCCGCCCGCTCCCGCCTCCG CAGCCGCGACTCCCAGTGGTACTTCTTCAGCCGCCTCGACCGCAAGCACGCCAACCGCGC CCGCACCAACCGCGCCACCGCCGGCGGCTACTGGAAGACCACCGGCAAGGACAGGGAGGT CCGCAACGGCCCCACCACCGTCGGCATGAAGAAGACCCTCGTCTTCCACGCCGGCCGCGC CCCCAAGGGCGAGCGCACCAACTGGGTCATGCACGAGTACCGCCTCGACGGCCAAACCAC CATCCCACCACAGGATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCC ACAGAACGGGGCTCAGTACGGAGCTCCTTTTGTTGAGGAGGAGTGGGAGGAGGATGACGA GGATGTTGGTTTGCTACCGGTGGAGGAGAAGGACAACTCTGATGACCAGGAAAAGGAAAT TTCTGGTGCTATGGAGAAGGGCTATCTCCAGATGAGTGACCTCGTTCAGAACTTGGTTGA TCAAAATGAGAATGGTACCATTGCCTTGCCAGTTTCTGACAATTCAAACAACAGCAACCA TTCTGAAGACGTGGATGGAAATTCAGGGGACATTTTAAGTGACCAAAACCTTGGGTCTAA CTTTCTTCACCATGTTGAGCCTGTGGAGCAAAATGGCCTAGTGCTTAATGAAAATATGTT TTCTAGTGCCAATGCTGGAGACCTTTTTAATATATCTAGCCCCAATGATGGATTCCTAGA ACTGAAGGATTTTGCAGATATTGCAGATTTGGAGAATCCTTTAGCCAATGAATCCACCAT CTGGCCTTCTGATGGTTGGCCCTGGAAATCAACTGATTCCATGGAGGCTGTGAATGGGGC TAGCAATGAATTTTCTCCCTTAGCTGGTGAACAGATATTCCAGCCAGAAGAATTGGAACA GTTGTTACAGTCACTGCAAGAAGACTCTCATATGGGTTCAACTATCTCTGATCCCCCACA TTCATCTATAACAAATTTAGCTAAGCCAGAGGAAGATTGTCTAATGTTCTATGATGCACC CTTTGATTCTTCAATGTGTGATGATGGTTTTAGACAGCTCAATGGATTTCTTGGCTCCCC ATCGACCAATCTATCTGGTATTGACATGGTGGACGATGGTATGCCGTACTATGATGCGAT GGATGATAACTTGTTTAATGATCTTCTGAGCTCAGTACAGCCATCAGCTGGTAGCAGTTC CCATGCTTTTAGTGGGCCAGTCCTTACTCAAGAGGTCAACAATTCAACCTATACATATAG TCCAACTCAAAAGGTTTTAGAACCTAATTTTGTAGTTGGTGCCCCATCATCTGCTAGGTT ACCTGAAGCGGGTAGTCAGTTAAATTATGTTGTTTTACCAGGTAATATTACTATGGAGAA GTACCATAGGTCAATTATTATTTCCTGCTCTTTAGTGCTGATCCATCATGGAAAAAGAGC ATTCTCAGCACTTTTTGGGCCACTAATAATTAATCTTTTTTTTTTTGCAATGAGGAATTG TTCATTGTTGTATTTACTTGTCCTGATTGAGCAAGATTTAAGTATTACTAGATCATTTTT GTGGAGACACTCTTATCTTGCTCAATCAGTGCAGTGTTACACACAATTGGCATGTGATTT CTCATTGCCTGGCCATTAACTTGTACCTGTAATTGAACATTATTGACAAGTGTTTGTACT ATATTCCACAGATTCCC