Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0562100-02
CDS Infomation	cds chromosome:IRGSP-1.0:8:28141244:28144877:1 gene:Os08g0562100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Sorghum chloroplast CM3 malate dehydrogenase (NADP) (Fragment). (Os08t0562100-01);Similar to Sorghum chloroplast CM3 malate dehydrogenase (NADP) (Fragment). (Os08t0562100-02)
Sequence	ATGGCGGCAATCGATCTCTCCTCCCCCGCAAGATCATCGCCGGCGCCTCTCTCCCCGCGC CGCGGCTCCCTGCACCTCCTCCTCCGACGCCCGCGCCGACCCACCCTCCGCTGCTCCCTC GACGCCGCGCCAAAGCAGGCTCAGGCTCAGGGCCCGCCCGCGGCGGTCGCGGCGGAGGAG GCGCCCACCGCGCGCAAGGAGTGCTATGGCGTCTTCTGCACCACCTACGACCTCAGGGCG GATGAGAAGACAAAGTCCTGGAAGAGCTTAGTGAATGTTGCTGTGTCGGGTGCAGCAGGG ATGATATCAAATCATCTGCTTTTCAAACTTGCCTCTGGTGAGGTTTTTGGACCGGACCAA CCAATAGCACTTAAGTTGTTGGGCTCTGAAAGATCAATACAAGCACTTGAAGGTGTGGCT ATGGAATTGGAGGATTCACTGTATCCATTGCTAAGGGAAGTCAGCATTGGTATAGACCCT TATGTAGTCTTCGAAGATGCAGAATGGGCTCTTCTTATTGGGGCTAAGCCCAGAGGTCCT GGAATGGAGCGATCTGCCTTACTAGATATCAACGGTCAAATCTTTGCTGAACAGGGGAAA GCACTTAACTCCGTGGCATCTCGGAATGTGAAGGTCATAGTTGTCGGGAACCCCTGTAAC ACTAATGCATTGATTTGCTTAAAGAATGCTCCCAACATACCAGCAAAAAACTTTCATGCA TTGACGAGGTTGGATGAAAATAGAGCCAAGTGCCAGCTGGCACTAAAAGCGGGTGTATTT TATGACAAAGTATCAAATATGACTATTTGGGGGAACCACTCAACAACTCAGGTTCCTGAT TTTTTGAATGCTAAAATTAACGGGAGACCAGTGAAAGAAGTCATTAAAGACACAAAGTGG TTAGAAGATGAATTCACCAAAACAGTTCAAAAGCGTGGAGGAGTACTCATACAAAAATGG GGCAGATCTTCAGCTGCATCAACCGCCGTTTCCATCGTGGATGCTATTAGGTCCCTTGTA AATCCTACCCCAGAAGGCGATTGGTTCTCTACTGGGGTTTATACGACTGGAAATCCTTAT GGCATAGCAGAGGACATCGTGTTCAGTATGCCATGCAGGTCAAAGGGTGATGGTGACTAC GAACTAGTTAAAGATGTGGCAATGGACGATTTCCTCTGGGAACGGATAAAAAAGAGTGAA GCTGAATTGCTCGCCGAGAAAAGATGCGTTGCCCATCTTACTGGAGAGGGCAATGCATTT TGTGATCTTCCCGGAGACACCATGCTTCCAGGAGAAATGTAG

Peptide Sequence

PEP ID	Os08t0562100-02
PEP Infomation	pep chromosome:IRGSP-1.0:8:28141244:28144877:1 gene:Os08g0562100 transcript:Os08t0562100-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Sorghum chloroplast CM3 malate dehydrogenase (NADP) (Fragment). (Os08t0562100-01);Similar to Sorghum chloroplast CM3 malate dehydrogenase (NADP) (Fragment). (Os08t0562100-02)
Sequence	MAAIDLSSPARSSPAPLSPRRGSLHLLLRRPRRPTLRCSLDAAPKQAQAQGPPAAVAAEE APTARKECYGVFCTTYDLRADEKTKSWKSLVNVAVSGAAGMISNHLLFKLASGEVFGPDQ PIALKLLGSERSIQALEGVAMELEDSLYPLLREVSIGIDPYVVFEDAEWALLIGAKPRGP GMERSALLDINGQIFAEQGKALNSVASRNVKVIVVGNPCNTNALICLKNAPNIPAKNFHA LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNAKINGRPVKEVIKDTKW LEDEFTKTVQKRGGVLIQKWGRSSAASTAVSIVDAIRSLVNPTPEGDWFSTGVYTTGNPY GIAEDIVFSMPCRSKGDGDYELVKDVAMDDFLWERIKKSEAELLAEKRCVAHLTGEGNAF CDLPGDTMLPGEM

Transcript Sequence

Transcript ID	Os08t0562100-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:28141244:28144877:1 gene:Os08g0562100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Sorghum chloroplast CM3 malate dehydrogenase (NADP) (Fragment). (Os08t0562100-01);Similar to Sorghum chloroplast CM3 malate dehydrogenase (NADP) (Fragment). (Os08t0562100-02)
Sequence	ACTCCCATGGCGGCAATCGATCTCTCCTCCCCCGCAAGATCATCGCCGGCGCCTCTCTCC CCGCGCCGCGGCTCCCTGCACCTCCTCCTCCGACGCCCGCGCCGACCCACCCTCCGCTGC TCCCTCGACGCCGCGCCAAAGCAGGCTCAGGCTCAGGGCCCGCCCGCGGCGGTCGCGGCG GAGGAGGCGCCCACCGCGCGCAAGGAGTGCTATGGCGTCTTCTGCACCACCTACGACCTC AGGGCGGATGAGAAGACAAAGTCCTGGAAGAGCTTAGTGAATGTTGCTGTGTCGGGTGCA GCAGGGATGATATCAAATCATCTGCTTTTCAAACTTGCCTCTGGTGAGGTTTTTGGACCG GACCAACCAATAGCACTTAAGTTGTTGGGCTCTGAAAGATCAATACAAGCACTTGAAGGT GTGGCTATGGAATTGGAGGATTCACTGTATCCATTGCTAAGGGAAGTCAGCATTGGTATA GACCCTTATGTAGTCTTCGAAGATGCAGAATGGGCTCTTCTTATTGGGGCTAAGCCCAGA GGTCCTGGAATGGAGCGATCTGCCTTACTAGATATCAACGGTCAAATCTTTGCTGAACAG GGGAAAGCACTTAACTCCGTGGCATCTCGGAATGTGAAGGTCATAGTTGTCGGGAACCCC TGTAACACTAATGCATTGATTTGCTTAAAGAATGCTCCCAACATACCAGCAAAAAACTTT CATGCATTGACGAGGTTGGATGAAAATAGAGCCAAGTGCCAGCTGGCACTAAAAGCGGGT GTATTTTATGACAAAGTATCAAATATGACTATTTGGGGGAACCACTCAACAACTCAGGTT CCTGATTTTTTGAATGCTAAAATTAACGGGAGACCAGTGAAAGAAGTCATTAAAGACACA AAGTGGTTAGAAGATGAATTCACCAAAACAGTTCAAAAGCGTGGAGGAGTACTCATACAA AAATGGGGCAGATCTTCAGCTGCATCAACCGCCGTTTCCATCGTGGATGCTATTAGGTCC CTTGTAAATCCTACCCCAGAAGGCGATTGGTTCTCTACTGGGGTTTATACGACTGGAAAT CCTTATGGCATAGCAGAGGACATCGTGTTCAGTATGCCATGCAGGTCAAAGGGTGATGGT GACTACGAACTAGTTAAAGATGTGGCAATGGACGATTTCCTCTGGGAACGGATAAAAAAG AGTGAAGCTGAATTGCTCGCCGAGAAAAGATGCGTTGCCCATCTTACTGGAGAGGGCAAT GCATTTTGTGATCTTCCCGGAGACACCATGCTTCCAGGAGAAATGTAGAATCATTGTTGC GGTAACCCTGGCTTGTGTTATTTCACAGGGGTTTTCGACGGAAACACACACACACAAACT ACTAGTAGCTGAGAGAAACAACTGCTTGCAGATTACTTGCAGCAGTTATTTATACGTATG TATAATAAGTATTTATTTAATAAGGATGCCACAGAAATTTCAACTATGTTGCCGAGTTTG TACACTATAATACAATCAACCAAATGCAATGCGGCTGATCGTATAGCATATACTTCTGGA TTTTCCCAGTTTTGC