Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0559900-01
CDS Infomation	cds chromosome:IRGSP-1.0:8:28014059:28019958:1 gene:Os08g0559900 gene_biotype:protein_coding transcript_biotype:protein_coding description:PAP/25A core domain containing protein. (Os08t0559900-01)
Sequence	ATGGCCGCCGCCGCCTCTCCTCCTGTCCCGTCCAAAGTCGACGCCTCGTCTCGGCCCGAC CGCTCCCCCAGGCCGCAGAGCTTGGAAATCTCATGGGATTCACAAGCAGCGTTATGCAAG CGTGCAGAGAGTTGCGAGTTGGAGGCAGAAGTACCCTCTATCAATCCTACTTTGCTTCCA GTTCTCGAGGATTTACTTATAGAATTATATGCAATATTGCGTCCAAAGCCTGATGACTAT GAGCAACGGCATTTGATGATCGATGTCTTCAACAAAATAGCAGAAGAGATATATGGTAAA AAGAAGGGGTTTCCAGTTGTGGAAGCATTTGGATCGTTCACAATGGATCTATTTACTTCC AAAAGTGACCTTGACCTCTCTGTCAACTTTAATGCTGATTTTCATAGTCAATTTGCTCGC AAGGACAAGATTTCTGTTATTCGGAACCTCGCAAAAGTTCTATATGCTCATCAGAGGAAT GGCCGTTGTCATGGGGTTTTACCTGTTGTAACTGCTAAAGTTCCTGTACTGAAGGTTATT GATAAGGGAACTGGGGTTGAGTGTGATATTTCAGTTGAGAACAAAGATGGCATGTCAAGA TCAATGATATTTAAACTTATTTCATCCATTGATGAAAGATTTCAGATACTATGTTATCTG ATGAAATTCTGGGCAAAGGCACATGATGTTAATTGCCCCAGAGATCGAACAATGAGCTCA ATGGCGATTATCTCTTTAGTTGCTTTCCATTTACAGACCCGGCGACCTCCAATCTTACCT GCATTTTCTGCCTTGTTGAAAGATGGTCCAGACTTTCCAAGTATTCAGAGAAATGTCTCA CTAGTTGAGGGGTTTGGGAGCAGAAATAAAGAATCAGTTGCCGAGCTTTTTGTGTCACTT ATGAGTAAACTACTATCAGTGGAGGGTTTATGGGAGCAAGGGCTCTGTGCTAGCAATTTT GAAGGGTCATGGATCTTTAAGACCTGGGAAAGAGGAGTTGGTAACTTGAGTGTTGAGGAC TTCTTGGACCGGTCACAGAATTTTGCCAGAGCAGTAGGCAAGGAGGAGATGCAGAAAATC AGCGAATGCATAAGGGTCGCTGTTTTGAATTTGAACAATTTCTTTAGGGGTAAAATTGAT GCACCAAAGCTGAAGAACCTTTTGTTTGAGCCGCCTCATCAGGATGAGCTGATCAGTAAT CCCAGTCTAAAGCGTCCTAAGAGGAAGGACCACCCAACGCATGGCCCAGAAAGCAACCCA CAGCAGCAAAAGAAAGCGAAGCATATTATTGGCCCAGAAAGCAACCAGAAGCAGCAAAAG AAAGTGAAGCATACTGTAAACCCTGGACCGGCCGCTAGTAGATCTGCCACTAATTTACAC CGTCCTACCGCATTTGTGCCTCAAATACGGCCCATCCAACCAATTAATCAGGTTTCCCAC ATACCTCAACCTTTGGTTGACCCTATGTTTGCTTATGGGTTACCACCACAACAGCATCTA CATTCAGCTCCCCTTTATTGTCAGGGGTTACTAGGTCAACAGCAGGGTAATTTCATCCAC CTGAATCCTGGAATCCAACCGCAGCAGCAAGCCCAACATATGTTTGTCCCTTTACTAGAA CAGCAACCTGTGATCAATGGTTTTCACCCCTATGATTTCCATTTGGCCCAGCTAATTCAG CATAACGAGAATATAGCGTTACAAAGGAATATAGCTTATGGAACCTATCCATATTACAGG AGATGA

Peptide Sequence

PEP ID	Os08t0559900-01
PEP Infomation	pep chromosome:IRGSP-1.0:8:28014059:28019958:1 gene:Os08g0559900 transcript:Os08t0559900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:PAP/25A core domain containing protein. (Os08t0559900-01)
Sequence	MAAAASPPVPSKVDASSRPDRSPRPQSLEISWDSQAALCKRAESCELEAEVPSINPTLLP VLEDLLIELYAILRPKPDDYEQRHLMIDVFNKIAEEIYGKKKGFPVVEAFGSFTMDLFTS KSDLDLSVNFNADFHSQFARKDKISVIRNLAKVLYAHQRNGRCHGVLPVVTAKVPVLKVI DKGTGVECDISVENKDGMSRSMIFKLISSIDERFQILCYLMKFWAKAHDVNCPRDRTMSS MAIISLVAFHLQTRRPPILPAFSALLKDGPDFPSIQRNVSLVEGFGSRNKESVAELFVSL MSKLLSVEGLWEQGLCASNFEGSWIFKTWERGVGNLSVEDFLDRSQNFARAVGKEEMQKI SECIRVAVLNLNNFFRGKIDAPKLKNLLFEPPHQDELISNPSLKRPKRKDHPTHGPESNP QQQKKAKHIIGPESNQKQQKKVKHTVNPGPAASRSATNLHRPTAFVPQIRPIQPINQVSH IPQPLVDPMFAYGLPPQQHLHSAPLYCQGLLGQQQGNFIHLNPGIQPQQQAQHMFVPLLE QQPVINGFHPYDFHLAQLIQHNENIALQRNIAYGTYPYYRR

Transcript Sequence

Transcript ID	Os08t0559900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:28014059:28019958:1 gene:Os08g0559900 gene_biotype:protein_coding transcript_biotype:protein_coding description:PAP/25A core domain containing protein. (Os08t0559900-01)
Sequence	ACTTCACGTCTTCACCGCCAGAAACCGACGGCCGCCGCCGCCGCCGCCGCATCTGCATGG CCGCCGCCGCCTCTCCTCCTGTCCCGTCCAAAGTCGACGCCTCGTCTCGGCCCGACCGCT CCCCCAGGCCGCAGAGCTTGGAAATCTCATGGGATTCACAAGCAGCGTTATGCAAGCGTG CAGAGAGTTGCGAGTTGGAGGCAGAAGTACCCTCTATCAATCCTACTTTGCTTCCAGTTC TCGAGGATTTACTTATAGAATTATATGCAATATTGCGTCCAAAGCCTGATGACTATGAGC AACGGCATTTGATGATCGATGTCTTCAACAAAATAGCAGAAGAGATATATGGTAAAAAGA AGGGGTTTCCAGTTGTGGAAGCATTTGGATCGTTCACAATGGATCTATTTACTTCCAAAA GTGACCTTGACCTCTCTGTCAACTTTAATGCTGATTTTCATAGTCAATTTGCTCGCAAGG ACAAGATTTCTGTTATTCGGAACCTCGCAAAAGTTCTATATGCTCATCAGAGGAATGGCC GTTGTCATGGGGTTTTACCTGTTGTAACTGCTAAAGTTCCTGTACTGAAGGTTATTGATA AGGGAACTGGGGTTGAGTGTGATATTTCAGTTGAGAACAAAGATGGCATGTCAAGATCAA TGATATTTAAACTTATTTCATCCATTGATGAAAGATTTCAGATACTATGTTATCTGATGA AATTCTGGGCAAAGGCACATGATGTTAATTGCCCCAGAGATCGAACAATGAGCTCAATGG CGATTATCTCTTTAGTTGCTTTCCATTTACAGACCCGGCGACCTCCAATCTTACCTGCAT TTTCTGCCTTGTTGAAAGATGGTCCAGACTTTCCAAGTATTCAGAGAAATGTCTCACTAG TTGAGGGGTTTGGGAGCAGAAATAAAGAATCAGTTGCCGAGCTTTTTGTGTCACTTATGA GTAAACTACTATCAGTGGAGGGTTTATGGGAGCAAGGGCTCTGTGCTAGCAATTTTGAAG GGTCATGGATCTTTAAGACCTGGGAAAGAGGAGTTGGTAACTTGAGTGTTGAGGACTTCT TGGACCGGTCACAGAATTTTGCCAGAGCAGTAGGCAAGGAGGAGATGCAGAAAATCAGCG AATGCATAAGGGTCGCTGTTTTGAATTTGAACAATTTCTTTAGGGGTAAAATTGATGCAC CAAAGCTGAAGAACCTTTTGTTTGAGCCGCCTCATCAGGATGAGCTGATCAGTAATCCCA GTCTAAAGCGTCCTAAGAGGAAGGACCACCCAACGCATGGCCCAGAAAGCAACCCACAGC AGCAAAAGAAAGCGAAGCATATTATTGGCCCAGAAAGCAACCAGAAGCAGCAAAAGAAAG TGAAGCATACTGTAAACCCTGGACCGGCCGCTAGTAGATCTGCCACTAATTTACACCGTC CTACCGCATTTGTGCCTCAAATACGGCCCATCCAACCAATTAATCAGGTTTCCCACATAC CTCAACCTTTGGTTGACCCTATGTTTGCTTATGGGTTACCACCACAACAGCATCTACATT CAGCTCCCCTTTATTGTCAGGGGTTACTAGGTCAACAGCAGGGTAATTTCATCCACCTGA ATCCTGGAATCCAACCGCAGCAGCAAGCCCAACATATGTTTGTCCCTTTACTAGAACAGC AACCTGTGATCAATGGTTTTCACCCCTATGATTTCCATTTGGCCCAGCTAATTCAGCATA ACGAGAATATAGCGTTACAAAGGAATATAGCTTATGGAACCTATCCATATTACAGGAGAT GACAGTTGCAGTATGAGAATGTAGCTAGGTAATGTTTCTGAGATAGGAAGTTCACACCGT CGCCATGTACCCTGGTGCAAATCAATTCGTTGATTTGTTGTAAAATTTAGTTGTGTGTTG TCATATATGTGCTGGGGAAGAAATTAAGTAGAGAGGCAGATTTTGCATAGCTATCAAAAG TTCTGGCAAAACCATGCTGCTGACTCTGCCACCTAGTTTTGTCACCGCAGATTGTGAGCT CTCATTTTTCCTTGTGCAAGTGGGGGTAAGAAGAATTCACGATTGTCATGGATCAAGATT GAGAGGTGTGCTGCAAAGCTTGCTGTTGAAAATTCTGTCAGTCATGCAAGATTGATGGAT GCTGATGATGAATCACTTGGTGTACTAGCTTATATATAATAGTAAAAATATCCAGCAAGA CCAACAAGAAGCAACTGCATTGCATCAGCATGTTATTCCTCTGCTAAGCATCCACCACTG CAGAGCAACCTCATGGACAAGAAATGGCAACATCTGCACTGCTGCTGGTGATAGGTATGG ATGAGCTGTTCCAGGTTTGTTGGGTATCAGCTGATAAACTGGGACTGTTCCAGGTTTGTT GGTATCAGCAAAAACTGGAGCTGCCGCCCATGGTAATCTCAATTCTGGTGTTGCTGATGA CCACATAACCTGATAAGATGGAAACTGCATGCAACTCACATAGCCCGGAACAAGATGCTT TCCATCATCACTCGTGTTTTGCCTGATGCGATGGAAATACCCAGACAAGGTGAGCTTTTG CACGAAAATGACATGAAAAATAATATGCCTCCCTTTTCCTTGCTTGCACTGTACATACCT GAAGCATATGATGTACCAGTACGATGGGATAGTGAACAGTATGCCGTTCTGTTTTTTGCC ATGG