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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0559400-01
CDS Infomation

cds chromosome:IRGSP-1.0:8:27999844:28002323:-1 gene:Os08g0559400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLOPHILIN 18-2 description:Similar to Cyclophilin-like protein. (Os08t0559400-01)
Sequence

ATGTGGGGCAGCGCCGACGGCGGCACGCCGGAGGTCACCCTGGAGACATCCATGGGCGCC
TTCACCATCGAGATGTACTACAAGCACGCGCCCAAGACCTGCAGGAACTTCCTCGAGCTC
TCGCGCCGCGGCTACTACGACAACGTCATCTTCCATCGCATCATCAAGGATTTCATCGTG
CAAGGTGGGGATCCTACTGGCACCGGAAGAGGCGGCGAATCCATCTACGGAGCAAAGTTC
GAGGATGAGATTAGGCCAGAACTGAAGCACACCGGCGCTGGAATTCTGTCGATGGCCAAC
GCTGGTCCAAATACAAATGGAAGCCAGTTCTTTATTACTCTTGCGCCTTGTCAGTCACTT
GATGGAAAGCATACAATTTTTGGGAGAGTATCAAAAGGAATGGAAATTGTCAAGCGCCTT
GGAAGTGTCCAGACAGACAAAAGTGATAGGCCCATCCATGAAGTGAAAATCCTGCGGACT
GTGGTCAAAGATTGA

Peptide Sequence

PEP ID

Os08t0559400-01
PEP Infomation

pep chromosome:IRGSP-1.0:8:27999844:28002323:-1 gene:Os08g0559400 transcript:Os08t0559400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLOPHILIN 18-2 description:Similar to Cyclophilin-like protein. (Os08t0559400-01)
Sequence

MWGSADGGTPEVTLETSMGAFTIEMYYKHAPKTCRNFLELSRRGYYDNVIFHRIIKDFIV
QGGDPTGTGRGGESIYGAKFEDEIRPELKHTGAGILSMANAGPNTNGSQFFITLAPCQSL
DGKHTIFGRVSKGMEIVKRLGSVQTDKSDRPIHEVKILRTVVKD

Transcript Sequence

Transcript ID

Os08t0559400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:27999844:28002323:-1 gene:Os08g0559400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLOPHILIN 18-2 description:Similar to Cyclophilin-like protein. (Os08t0559400-01)
Sequence

AAGGGAATCTCTCCTCTTCTCTTCTCTTCTCGCGCCGCCGCCGTGTCCAGTGCCCAAGAT
GTGGGGCAGCGCCGACGGCGGCACGCCGGAGGTCACCCTGGAGACATCCATGGGCGCCTT
CACCATCGAGATGTACTACAAGCACGCGCCCAAGACCTGCAGGAACTTCCTCGAGCTCTC
GCGCCGCGGCTACTACGACAACGTCATCTTCCATCGCATCATCAAGGATTTCATCGTGCA
AGGTGGGGATCCTACTGGCACCGGAAGAGGCGGCGAATCCATCTACGGAGCAAAGTTCGA
GGATGAGATTAGGCCAGAACTGAAGCACACCGGCGCTGGAATTCTGTCGATGGCCAACGC
TGGTCCAAATACAAATGGAAGCCAGTTCTTTATTACTCTTGCGCCTTGTCAGTCACTTGA
TGGAAAGCATACAATTTTTGGGAGAGTATCAAAAGGAATGGAAATTGTCAAGCGCCTTGG
AAGTGTCCAGACAGACAAAAGTGATAGGCCCATCCATGAAGTGAAAATCCTGCGGACTGT
GGTCAAAGATTGAGGCACAGCGGGTCTACTCGGTGTCACTCATGACTTCTGGTATTTGGA
GTTGTAGCTGCTGTCAGTTTCAGGAATTGTTTCCTGCTTGTTCCGTGCTTATGCAGTGGT
GTATCGTTTCGGATGGGCTAGTTTAGTTATTAACAACTCATGAATCGTGATCCGTCTTAA
TTATTCTCACCTGAACGAGTAGTGTTCAGTGATTATCAGTGGAAATAACTTTCGAAATAT
ATGAAGTCATTTTGAGCGC