Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0559300-01
CDS Infomation	cds chromosome:IRGSP-1.0:8:27991559:27999290:1 gene:Os08g0559300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SPINDLY description:O-linked N-acetylglucosamine transferase, Negative regulator of gibberellin (GA) signaling, Brassinosteroid (BR) synthesis (Os08t0559300-01)
Sequence	ATGGGGCGACCGGGGATGGACTCCAGCGAAGGGAGGGAGAGCAATGGCGTTGTTCCTGAA CGTAATGGTGGTGCTGTCCCTGCAAAACAGCAGTTGGACGGGAAGGACACCTTGCGGTAC GCCAACATCCTCCGCTCCCGCAACAAATTTGCCGAAGCACTCCAGTTGTACAATAATGTC CTTGAGAAGGATGAAGCCAATGTGGAGGCCCTTATTGGCAAAGGGATTTGCCTCCAGGCA CAGAGCCTACCTATGCAGGCCATCGAGTGCTTCAACGAGGCCGTCAGGATCGACCCAGGG AATGCATGTGCTCTCACTTATTGTGGGATGATATACAAAGATGAGGGTCACTTAGTTGAA GCTGCAGAGGCTTATCAAAAAGCTCGAAATGCAGATCCTTCCTACAAACCTGCTGCAGAG TTTCTTGCTATTGTGTTGACCGATCTTGGAACTAGCTTGAAGCTTGCAGGTAATACAGAG GAGGGGATTCAAAAATATTGTGAAGCTTTGGAAGTTGACAGCCACTATGCGCCTGCTTAT TACAACCTTGGTGTGGTTTACTCGGAGATGATGCAATTTGATTTGGCTCTTACTTGTTAC GAGAAAGCTGCTTTGGAGAGGCCATTGTATGCTGAAGCTTATTGCAACATGGGAGTTATT TACAAGAATCGTGGAGAATTAGAAGCAGCAATTGCCTGCTACGAGAGGTGCTTGACTATT TCCCCAAATTTTGAGATTGCCAAGAATAACATGGCAATAGCACTAACCGACTTGGGTACA AAGGTAAAAATTGAGGGTGACATTAATCAAGGTGTGGCATATTACAAGAAAGCTCTGTTC TACAATTGGCACTACGCTGATGCCATGTATAATCTTGGTGTCGCATATGGTGAAATGTTG AATTTTGAGATGGCTATTGTTTTTTACGAGCTTGCTCTGCACTTCAATCCTCGCTGTGCG GAGGCATGCAACAACCTGGGAGTAATATACAAGGACAGGGATAATCTTGACAAAGCTGTT GAATGTTATCAAATGGCCTTGTCAATTAAGCCAAATTTCTCTCAGTCATTGAATAACCTT GGAGTTGTCTACACTGTCCAGGGAAAGATGGATGCTGCTTCAAGCATGATTCAGAAGGCC ATATTTGCAAATTCCACGTATGCTGAAGCATATAATAACTTGGGTGTTCTTTACAGAGAT GCAGGAAGTATTACTTCAGCCGTACAAGCTTATGAGAAATGCCTTCAAATTGATCCTGAT TCACGAAATGCTGGTCAGAATCGTTTGCTTGCGTTGAATTATATTGATGAGGGCTTTGAC GACAAGCTTTATCAAGCTCACAGGGAGTGGGGAAAACGCTTCCTGAAATTGTATCCACAG TATACTAGTTGGGATAACCCAAAAGTCGCTGATCGTCCTCTGGTCATTGGCTATGTGTCT CCTGATTACTTTACTCACTCTGTGTCATACTTCATTGAAGCTCCCCTTGCACACCATGAC TACTCAAATTACAAGGTGGTTGTGTATTCTGGTGTTGTGAAGGCAGATGCCAAGACCCTT CGATTCAAGGATAAGGTATTAAAAAAGGGTGGGTTGTGGAGAGATATATATGGTATTGAT GAAAAGAAGGTTGCTAGCTTGGTAAGAGAGGACAAAGTGGATATACTTGTGGAACTTACT GGTCATACGGCAAATAACAAGTTAGGAACAATGGCATGCAGGCCTGCTCCTATTCAGGTT ACATGGATTGGCTACCCTAATACAACAGGTCTGCCAACAATTGACTACAGAATAACAGAT TCATTGGCTGACCCACCTGATACAACCCAAAAGCATGTTGAAGAGTTGGTGCGCCTTCCT GAAAGCTTTCTTTGTTACAGTCCTTCCCCAGAAGCTGGGCCAGTTTGTCCCACTCCAGCA ATTTTAAATGGTTTCATCACGTTTGGGAGTTTTAATAATCTAGCAAAGATTACACCAAAA GTATTGCAAGTTTGGGCCAAAATTTTGTGTGCAGTCCCTAACTCCCGTCTTGTGGTTAAG TGTAAGCCATTCTGCTGCGACAGTATTAGACAGAAATTCCTATCAACACTAGCAGAATTG GGTTTGGAGCCGTTACGAGTTGACTTGCTGCCACTCATCCATCTCAACCATGATCACATG CAAGCATATTCCCTAATGGACATAAGCCTGGATACGTTTCCATATGCTGGAACTACTACT ACATGTGAATCTCTATACATGGGGGTTCCATGTGTTACTATGGCTGGCTCAGTCCATGCT CATAATGTTGGTGTTAGTCTACTCACTAAAGTTGGGCTGGGGAGGCTGGTTGCGAAGTCT GAGAATGAATATGTTAGCTTAGCATTGGATTTAGCGGCAGATGTTACTGCCTTGCAAGAA CTGAGAATGAGCCTCCGAGGGCTGATGGCGAAATCACCAGTGTGTGATGGAGAGAATTTC ACACGTGGTCTGGAATCTGCATACAGAAACATGTGGCGCAGATACTGTGATGGGGATGCA CCTGCCCTCAGGCGGTTGGATCTGTTACAGGAAGAGCCATGCTCCAATAACAATAAGCAA GATTTTGATGACAATCAGGTCGCAAAGCTCGCAGATCTGAAAGCACAGAGAGTGGATGCC GCGGTAGATGGAGACAAGCAATCCCAGTTAACAGCGCATGCTGCAGTAGTAGGGGAAGTT CAGCAGGCCCCAATAATGGTGAATGGTGTGAGTTCACCTGTCTCTTCTGGGAAAGTTGAA GCAAATGGGCACATAAGCCGGTGA

Peptide Sequence

PEP ID	Os08t0559300-01
PEP Infomation	pep chromosome:IRGSP-1.0:8:27991559:27999290:1 gene:Os08g0559300 transcript:Os08t0559300-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SPINDLY description:O-linked N-acetylglucosamine transferase, Negative regulator of gibberellin (GA) signaling, Brassinosteroid (BR) synthesis (Os08t0559300-01)
Sequence	MGRPGMDSSEGRESNGVVPERNGGAVPAKQQLDGKDTLRYANILRSRNKFAEALQLYNNV LEKDEANVEALIGKGICLQAQSLPMQAIECFNEAVRIDPGNACALTYCGMIYKDEGHLVE AAEAYQKARNADPSYKPAAEFLAIVLTDLGTSLKLAGNTEEGIQKYCEALEVDSHYAPAY YNLGVVYSEMMQFDLALTCYEKAALERPLYAEAYCNMGVIYKNRGELEAAIACYERCLTI SPNFEIAKNNMAIALTDLGTKVKIEGDINQGVAYYKKALFYNWHYADAMYNLGVAYGEML NFEMAIVFYELALHFNPRCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL GVVYTVQGKMDAASSMIQKAIFANSTYAEAYNNLGVLYRDAGSITSAVQAYEKCLQIDPD SRNAGQNRLLALNYIDEGFDDKLYQAHREWGKRFLKLYPQYTSWDNPKVADRPLVIGYVS PDYFTHSVSYFIEAPLAHHDYSNYKVVVYSGVVKADAKTLRFKDKVLKKGGLWRDIYGID EKKVASLVREDKVDILVELTGHTANNKLGTMACRPAPIQVTWIGYPNTTGLPTIDYRITD SLADPPDTTQKHVEELVRLPESFLCYSPSPEAGPVCPTPAILNGFITFGSFNNLAKITPK VLQVWAKILCAVPNSRLVVKCKPFCCDSIRQKFLSTLAELGLEPLRVDLLPLIHLNHDHM QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLGRLVAKS ENEYVSLALDLAADVTALQELRMSLRGLMAKSPVCDGENFTRGLESAYRNMWRRYCDGDA PALRRLDLLQEEPCSNNNKQDFDDNQVAKLADLKAQRVDAAVDGDKQSQLTAHAAVVGEV QQAPIMVNGVSSPVSSGKVEANGHISR

Transcript Sequence

Transcript ID	Os08t0559300-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:27991559:27999290:1 gene:Os08g0559300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SPINDLY description:O-linked N-acetylglucosamine transferase, Negative regulator of gibberellin (GA) signaling, Brassinosteroid (BR) synthesis (Os08t0559300-01)
Sequence	AAAGAAGGGAAAAAAAATACGAAAAGCAAAAAGGAATAAACGGAGGGGGCTAAACACCAA AATTCCCCCTCTCCTTCTCCTTCCCCTCCTCCCGAAACCCTCGCCGCCGTCGCTGTCGAA ACCCTCGCTGCTGCTGCTGCCGCACGGCGCGGCGGGGTACCGGGTCCCCCTCCCTGCGGC GGCGCGGAGGGGTAGGTCTCCCCCCCCTCGCTGCGGCGTGGCGGTGGGGGGTGCGGTGCC GGCTGCCGCGCCATGATCTTGCGCCGGTGGACTGCGCCTATCCAATAAAAAAAAAAGATA AAGATAGAACAAGTAGGTTACTTTCCGTACCATGGGGCGACCGGGGATGGACTCCAGCGA AGGGAGGGAGAGCAATGGCGTTGTTCCTGAACGTAATGGTGGTGCTGTCCCTGCAAAACA GCAGTTGGACGGGAAGGACACCTTGCGGTACGCCAACATCCTCCGCTCCCGCAACAAATT TGCCGAAGCACTCCAGTTGTACAATAATGTCCTTGAGAAGGATGAAGCCAATGTGGAGGC CCTTATTGGCAAAGGGATTTGCCTCCAGGCACAGAGCCTACCTATGCAGGCCATCGAGTG CTTCAACGAGGCCGTCAGGATCGACCCAGGGAATGCATGTGCTCTCACTTATTGTGGGAT GATATACAAAGATGAGGGTCACTTAGTTGAAGCTGCAGAGGCTTATCAAAAAGCTCGAAA TGCAGATCCTTCCTACAAACCTGCTGCAGAGTTTCTTGCTATTGTGTTGACCGATCTTGG AACTAGCTTGAAGCTTGCAGGTAATACAGAGGAGGGGATTCAAAAATATTGTGAAGCTTT GGAAGTTGACAGCCACTATGCGCCTGCTTATTACAACCTTGGTGTGGTTTACTCGGAGAT GATGCAATTTGATTTGGCTCTTACTTGTTACGAGAAAGCTGCTTTGGAGAGGCCATTGTA TGCTGAAGCTTATTGCAACATGGGAGTTATTTACAAGAATCGTGGAGAATTAGAAGCAGC AATTGCCTGCTACGAGAGGTGCTTGACTATTTCCCCAAATTTTGAGATTGCCAAGAATAA CATGGCAATAGCACTAACCGACTTGGGTACAAAGGTAAAAATTGAGGGTGACATTAATCA AGGTGTGGCATATTACAAGAAAGCTCTGTTCTACAATTGGCACTACGCTGATGCCATGTA TAATCTTGGTGTCGCATATGGTGAAATGTTGAATTTTGAGATGGCTATTGTTTTTTACGA GCTTGCTCTGCACTTCAATCCTCGCTGTGCGGAGGCATGCAACAACCTGGGAGTAATATA CAAGGACAGGGATAATCTTGACAAAGCTGTTGAATGTTATCAAATGGCCTTGTCAATTAA GCCAAATTTCTCTCAGTCATTGAATAACCTTGGAGTTGTCTACACTGTCCAGGGAAAGAT GGATGCTGCTTCAAGCATGATTCAGAAGGCCATATTTGCAAATTCCACGTATGCTGAAGC ATATAATAACTTGGGTGTTCTTTACAGAGATGCAGGAAGTATTACTTCAGCCGTACAAGC TTATGAGAAATGCCTTCAAATTGATCCTGATTCACGAAATGCTGGTCAGAATCGTTTGCT TGCGTTGAATTATATTGATGAGGGCTTTGACGACAAGCTTTATCAAGCTCACAGGGAGTG GGGAAAACGCTTCCTGAAATTGTATCCACAGTATACTAGTTGGGATAACCCAAAAGTCGC TGATCGTCCTCTGGTCATTGGCTATGTGTCTCCTGATTACTTTACTCACTCTGTGTCATA CTTCATTGAAGCTCCCCTTGCACACCATGACTACTCAAATTACAAGGTGGTTGTGTATTC TGGTGTTGTGAAGGCAGATGCCAAGACCCTTCGATTCAAGGATAAGGTATTAAAAAAGGG TGGGTTGTGGAGAGATATATATGGTATTGATGAAAAGAAGGTTGCTAGCTTGGTAAGAGA GGACAAAGTGGATATACTTGTGGAACTTACTGGTCATACGGCAAATAACAAGTTAGGAAC AATGGCATGCAGGCCTGCTCCTATTCAGGTTACATGGATTGGCTACCCTAATACAACAGG TCTGCCAACAATTGACTACAGAATAACAGATTCATTGGCTGACCCACCTGATACAACCCA AAAGCATGTTGAAGAGTTGGTGCGCCTTCCTGAAAGCTTTCTTTGTTACAGTCCTTCCCC AGAAGCTGGGCCAGTTTGTCCCACTCCAGCAATTTTAAATGGTTTCATCACGTTTGGGAG TTTTAATAATCTAGCAAAGATTACACCAAAAGTATTGCAAGTTTGGGCCAAAATTTTGTG TGCAGTCCCTAACTCCCGTCTTGTGGTTAAGTGTAAGCCATTCTGCTGCGACAGTATTAG ACAGAAATTCCTATCAACACTAGCAGAATTGGGTTTGGAGCCGTTACGAGTTGACTTGCT GCCACTCATCCATCTCAACCATGATCACATGCAAGCATATTCCCTAATGGACATAAGCCT GGATACGTTTCCATATGCTGGAACTACTACTACATGTGAATCTCTATACATGGGGGTTCC ATGTGTTACTATGGCTGGCTCAGTCCATGCTCATAATGTTGGTGTTAGTCTACTCACTAA AGTTGGGCTGGGGAGGCTGGTTGCGAAGTCTGAGAATGAATATGTTAGCTTAGCATTGGA TTTAGCGGCAGATGTTACTGCCTTGCAAGAACTGAGAATGAGCCTCCGAGGGCTGATGGC GAAATCACCAGTGTGTGATGGAGAGAATTTCACACGTGGTCTGGAATCTGCATACAGAAA CATGTGGCGCAGATACTGTGATGGGGATGCACCTGCCCTCAGGCGGTTGGATCTGTTACA GGAAGAGCCATGCTCCAATAACAATAAGCAAGATTTTGATGACAATCAGGTCGCAAAGCT CGCAGATCTGAAAGCACAGAGAGTGGATGCCGCGGTAGATGGAGACAAGCAATCCCAGTT AACAGCGCATGCTGCAGTAGTAGGGGAAGTTCAGCAGGCCCCAATAATGGTGAATGGTGT GAGTTCACCTGTCTCTTCTGGGAAAGTTGAAGCAAATGGGCACATAAGCCGGTGACCAAG GGGAGTCGAGCATACTCCATTGATGTGGGAAACACTGACCCACTGTAGCTTGAGATGCAC CATTGCTGTGGTGGACATTTGTTCTTACAGAATTCGACGCTTTGCAGGCCTACACTGGGT GTCTCATTTGTCTGACACCCACAATGGATAAGAAAGAAGAGCACTTCTGTGCCATCCGAC GGTGATTTCTCTGGTTACACTTTGACCTTTGTAGCAAATGTAAGATTGATGGGGGATATG CTTATAGAGTTTGATTTGTAGAGGTATACCCCCTGTGTAGGTTTATGAACATGATGGCTT CAGTTGCCATATGTTAGAAGAAACAGAGAAAGAGGAGGAAGCCCTTGTTGTAAATGCAGA AAAAACAGAACTGAAAAACTACTAGAATCAATTGACGGCGGCATTTCAACAGGCTGTGTC ATGATG