Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0558600-02
CDS Infomation

cds chromosome:IRGSP-1.0:8:27956314:27958937:-1 gene:Os08g0558600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Synaptobrevin domain containing protein. (Os08t0558600-01);Synaptobrevin domain containing protein. (Os08t0558600-02)
Sequence

ATGAACGGCAATAAGCAGTCCCTGATATACAGCTTCGTGGCCAAGGGCTCCGTCGTGCTG
GCCGAGCACACCGCCTTCTCCGGCAACTTCAGCACCATCGCCGTCCAGTGCCTCCAGAAG
CTTCCCCCCAACACCTCCAAGTCCACCTACTCCTGCGATGGCCACACCTTCAACTTCCTC
GTCGACCGCGGCTTCGTGTTTCTCGTCGTTGCGGATGAGGCCGTTGGAAGGAGCGTGCCG
TTTGTGTTCCTAGATAGGGTTAAGGAAGACTTCATGCAGCGGTATGGCTCCAGTATCGAC
GAGGAGGGTCAACACCCGCTCGCCGATGATGCAGATGATGATGACTTCCTCTTGGAGGAC
CGATTTAGCATCGCCTACAATCTTGACCGGGAATTCGGACCGAGGCTGAAGGATCACATG
CTGTATTGTATTAATCATCCAGAGGAAATTAGCAAGCTCTCCAAAGTGAAAGCACACCTC
ACGGAGGTCAAAGGGATTATGATGGACAACATTGAGAAGATATTGGAACGTGGAGAGAAG
ATTGAGCTTTTGGTCGGCAAGACTGAAACCTTACAATCACAGGCTGACAGCTTCCACAGG
CATGGAAGAGAGCTCAGGCGTAAGATGTGGCTTCAGAACCTGAGGTTTAAGTTGATGGTG
GGTGGTGCTGTTGCGGCGTTGATTCTCTTCCTCTGGCTGATTATTTGCGGGGGCTTCAAG
TGCTAG

Peptide Sequence

PEP ID

Os08t0558600-02
PEP Infomation

pep chromosome:IRGSP-1.0:8:27956314:27958937:-1 gene:Os08g0558600 transcript:Os08t0558600-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Synaptobrevin domain containing protein. (Os08t0558600-01);Synaptobrevin domain containing protein. (Os08t0558600-02)
Sequence

MNGNKQSLIYSFVAKGSVVLAEHTAFSGNFSTIAVQCLQKLPPNTSKSTYSCDGHTFNFL
VDRGFVFLVVADEAVGRSVPFVFLDRVKEDFMQRYGSSIDEEGQHPLADDADDDDFLLED
RFSIAYNLDREFGPRLKDHMLYCINHPEEISKLSKVKAHLTEVKGIMMDNIEKILERGEK
IELLVGKTETLQSQADSFHRHGRELRRKMWLQNLRFKLMVGGAVAALILFLWLIICGGFK
C

Transcript Sequence

Transcript ID

Os08t0558600-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:27956314:27958937:-1 gene:Os08g0558600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Synaptobrevin domain containing protein. (Os08t0558600-01);Synaptobrevin domain containing protein. (Os08t0558600-02)
Sequence

GGCACGCACGCACTCGAATTCACCTTCACCTTCAGCGCGAGCCGCGAGCGAGAGAGGAAA
AGGGAAGCGACGATCTCTGCCCTTCTAGAAGGGTTTGGGATTTCTTGACTGGACGACCTC
GTGCGATTTCGGGAGGCAGGAGCCATGAACGGCAATAAGCAGTCCCTGATATACAGCTTC
GTGGCCAAGGGCTCCGTCGTGCTGGCCGAGCACACCGCCTTCTCCGGCAACTTCAGCACC
ATCGCCGTCCAGTGCCTCCAGAAGCTTCCCCCCAACACCTCCAAGTCCACCTACTCCTGC
GATGGCCACACCTTCAACTTCCTCGTCGACCGCGGCTTCGTGTTTCTCGTCGTTGCGGAT
GAGGCCGTTGGAAGGAGCGTGCCGTTTGTGTTCCTAGATAGGGTTAAGGAAGACTTCATG
CAGCGGTATGGCTCCAGTATCGACGAGGAGGGTCAACACCCGCTCGCCGATGATGCAGAT
GATGATGACTTCCTCTTGGAGGACCGATTTAGCATCGCCTACAATCTTGACCGGGAATTC
GGACCGAGGCTGAAGGATCACATGCTGTATTGTATTAATCATCCAGAGGAAATTAGCAAG
CTCTCCAAAGTGAAAGCACACCTCACGGAGGTCAAAGGGATTATGATGGACAACATTGAG
AAGATATTGGAACGTGGAGAGAAGATTGAGCTTTTGGTCGGCAAGACTGAAACCTTACAA
TCACAGGCTGACAGCTTCCACAGGCATGGAAGAGAGCTCAGGCGTAAGATGTGGCTTCAG
AACCTGAGGTTTAAGTTGATGGTGGGTGGTGCTGTTGCGGCGTTGATTCTCTTCCTCTGG
CTGATTATTTGCGGGGGCTTCAAGTGCTAGAACATTGAAAGCCTTTTTCTTTGTTTTGCA
TTCGATGTGTTTACCGTGTCGTGTGCATATATAACGACCAGCAAATCCTGCTTTCGATAT
GCTTCGTGCAGAGTTAAATCTCCTTATGGACCTTTATTCCTTGTAGCCTGTTCTCATGTT
TCATAGTATTACAATAGGGGGGCTCTGGAAATGGAATACTTGTGTAAACAAACCTTGTGA
AAGGAGACAACTTAGCTATCTGTATTATGTACATTCTGAAATGCTAATAGCTTATTTCAA
TCTC