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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0558300-00
CDS Infomation

cds chromosome:IRGSP-1.0:8:27942021:27942733:1 gene:Os08g0558300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os08t0558300-00)
Sequence

ATGGACAGCTCGCCGTCGCCGGCGCCGGCGTCCAGGGGGCGGTGGAGCTGGGGCTCGGCA
CTCGTGGGCGCCGCCTCAACGGCGGCGGCGGCGGCCGTGCTGCTGTGCCGGCCGCGTGAC
CCGACGTTCGAGCTCATCTCCATCAGCCTCTCCACCTTCCACTTCCGGCCGCCGGCGGCG
CTGGACATCGGCCTCACCCTCACCGTCCACGCCACCAACCCCAACGTCGTCCCCGTCCGC
TACGGCCCCTCCACCGTCTCCATCCTCTACGACGGCGCCCACCTCGGCACCGCCCGCCTC
GACGCCGGCGAGCAGCCGCCCACCTCTTGCCGCCTGCTCCACCTCCCCGCCCGCCTCGAC
GCCGTCGAGCTGGCGCACCACGCCCGCTCCATCCTCGCCGACACCGCGCGCCGCCACATG
GAGCTCGACGCCGCCGTCAAGATCGCCGGCGAGGCCGCCGTGGCCCTCTGGTCCCGCCGC
TTCTCCGTCAGCATCGACAGCCACATCGTCGTCGACCCCGTCTTCCTCGACGTCATCGAG
CAGGAGAACCACTCCGAGATGCAGCTCTACCTCACCTGA

Peptide Sequence

PEP ID

Os08t0558300-00
PEP Infomation

pep chromosome:IRGSP-1.0:8:27942021:27942733:1 gene:Os08g0558300 transcript:Os08t0558300-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os08t0558300-00)
Sequence

MDSSPSPAPASRGRWSWGSALVGAASTAAAAAVLLCRPRDPTFELISISLSTFHFRPPAA
LDIGLTLTVHATNPNVVPVRYGPSTVSILYDGAHLGTARLDAGEQPPTSCRLLHLPARLD
AVELAHHARSILADTARRHMELDAAVKIAGEAAVALWSRRFSVSIDSHIVVDPVFLDVIE
QENHSEMQLYLT

Transcript Sequence

Transcript ID

Os08t0558300-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:27942021:27942733:1 gene:Os08g0558300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os08t0558300-00)
Sequence

AAATCCCCAATACGCCTACATGGACAGCTCGCCGTCGCCGGCGCCGGCGTCCAGGGGGCG
GTGGAGCTGGGGCTCGGCACTCGTGGGCGCCGCCTCAACGGCGGCGGCGGCGGCCGTGCT
GCTGTGCCGGCCGCGTGACCCGACGTTCGAGCTCATCTCCATCAGCCTCTCCACCTTCCA
CTTCCGGCCGCCGGCGGCGCTGGACATCGGCCTCACCCTCACCGTCCACGCCACCAACCC
CAACGTCGTCCCCGTCCGCTACGGCCCCTCCACCGTCTCCATCCTCTACGACGGCGCCCA
CCTCGGCACCGCCCGCCTCGACGCCGGCGAGCAGCCGCCCACCTCTTGCCGCCTGCTCCA
CCTCCCCGCCCGCCTCGACGCCGTCGAGCTGGCGCACCACGCCCGCTCCATCCTCGCCGA
CACCGCGCGCCGCCACATGGAGCTCGACGCCGCCGTCAAGATCGCCGGCGAGGCCGCCGT
GGCCCTCTGGTCCCGCCGCTTCTCCGTCAGCATCGACAGCCACATCGTCGTCGACCCCGT
CTTCCTCGACGTCATCGAGCAGGAGAACCACTCCGAGATGCAGCTCTACCTCACCTGATG
CCATCTCATTTTCCTTTTAATTTAGATGACAAAACCTCGTCGATTGTTTCTCATGTGTGG
TTAAGTGTAATGCAATGAGATGAGATTTGGAATGCAATGCTCAACAAATCTCT