Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0553500-00
CDS Infomation

cds chromosome:IRGSP-1.0:8:27690054:27690770:1 gene:Os08g0553500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF241, plant family protein. (Os08t0553500-00)
Sequence

ATGGCATTCCACCTCAGATCCGCGAGTGCGCCTTCCAGCCCTCGCTCTGCCAAAACCGAC
GTCGAAGAACAGCTGCAGAGCCTCGAGGAGATCGTCTCCTCACCCTCTGCAACAATTGAA
ACAATGTGCAATGGTTTCAGGAGACTTACAGATGTGTACAGCTGCATGGATGAGATGATG
TGCTTGCCCAGCTTCAGGCTTCAGCAGAGGAGAGCTGTGGAGCAAGAGCTGGAGCGGTCT
CTCGCCTTGCTTGACCTCTGCAACGCCATGCAAGAGAGCTTCTCTGAGCTCAAGGCGAGC
ACCCAGGAGATGCAGTTGGCCATCAAGAGGGGTGATGATGCAGCAGTTCAGTCCAAGGTT
CAGGCTTACACCCGCCTGACCAAGAAGGCGCAGAAACAGTTCAAGAAGATCAACAAGAAG
TCTGCTTCAGAAGACCAGGAGGGTTGCAGGGTGGTCAAGCTGCTGGCTGATGCCAGAGAG
ATCGCTCTCTCGGTGCTTGAATCAACTTTGCACCTCCTGTCAAAGCAGATTGCGATGCCA
AGTCAAAGCAAGTGGTCTCTTGTCTCCAAGGCATTCCAGAAGACAAGGGTTACATGCCAG
GAGGAGCAATTACAGGCGTTGGAGTTGGACATCGTTGATCTTGAGAGCGGAGTTGAGACT
TTGTTCAGGAGATTGATCCAGAGCAGAGTTTCTCTTTTGAATGCTCTTAGCTTGTAG

Peptide Sequence

PEP ID

Os08t0553500-00
PEP Infomation

pep chromosome:IRGSP-1.0:8:27690054:27690770:1 gene:Os08g0553500 transcript:Os08t0553500-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF241, plant family protein. (Os08t0553500-00)
Sequence

MAFHLRSASAPSSPRSAKTDVEEQLQSLEEIVSSPSATIETMCNGFRRLTDVYSCMDEMM
CLPSFRLQQRRAVEQELERSLALLDLCNAMQESFSELKASTQEMQLAIKRGDDAAVQSKV
QAYTRLTKKAQKQFKKINKKSASEDQEGCRVVKLLADAREIALSVLESTLHLLSKQIAMP
SQSKWSLVSKAFQKTRVTCQEEQLQALELDIVDLESGVETLFRRLIQSRVSLLNALSL

Transcript Sequence

Transcript ID

Os08t0553500-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:27690054:27690770:1 gene:Os08g0553500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF241, plant family protein. (Os08t0553500-00)
Sequence

ATGGCATTCCACCTCAGATCCGCGAGTGCGCCTTCCAGCCCTCGCTCTGCCAAAACCGAC
GTCGAAGAACAGCTGCAGAGCCTCGAGGAGATCGTCTCCTCACCCTCTGCAACAATTGAA
ACAATGTGCAATGGTTTCAGGAGACTTACAGATGTGTACAGCTGCATGGATGAGATGATG
TGCTTGCCCAGCTTCAGGCTTCAGCAGAGGAGAGCTGTGGAGCAAGAGCTGGAGCGGTCT
CTCGCCTTGCTTGACCTCTGCAACGCCATGCAAGAGAGCTTCTCTGAGCTCAAGGCGAGC
ACCCAGGAGATGCAGTTGGCCATCAAGAGGGGTGATGATGCAGCAGTTCAGTCCAAGGTT
CAGGCTTACACCCGCCTGACCAAGAAGGCGCAGAAACAGTTCAAGAAGATCAACAAGAAG
TCTGCTTCAGAAGACCAGGAGGGTTGCAGGGTGGTCAAGCTGCTGGCTGATGCCAGAGAG
ATCGCTCTCTCGGTGCTTGAATCAACTTTGCACCTCCTGTCAAAGCAGATTGCGATGCCA
AGTCAAAGCAAGTGGTCTCTTGTCTCCAAGGCATTCCAGAAGACAAGGGTTACATGCCAG
GAGGAGCAATTACAGGCGTTGGAGTTGGACATCGTTGATCTTGAGAGCGGAGTTGAGACT
TTGTTCAGGAGATTGATCCAGAGCAGAGTTTCTCTTTTGAATGCTCTTAGCTTGTAG