Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0553000-00
CDS Infomation

cds chromosome:IRGSP-1.0:8:27669431:27670789:1 gene:Os08g0553000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF241, plant domain containing protein. (Os08t0553000-00)
Sequence

TTCTATGTTTTGCACATCCTTTGTATAAATAGGTCTCAGCACAAAGCTAGACACATCAAA
CCAAACTTTCCTCTCAACTCTCAGACTCACCAGAGACAGAGTTTAGCAATAGACATGGCT
TTCCACCAAAGATCAATTAGCTTGCCTTCTAGGCCTCTCTCCAAAGTTGAAGAGGAGCTG
CACAGCATAGAGGCATGCATCTCCTCACCCTCCCTGACCATCGAGACGATCTCTGATGGT
TTGAGGAGGCTTGGGGACATCTACAGCTCCATTGAGGAGATCATGTGCCTGCCTAGCAAC
CAAGTTTGCTCATCCGAGCAGAGGAGGTTGTTGGATGGAGAGATGGAATGCTCCCTTGAG
CTACTGGATCTCTGCAACGCTATGAACGAGGTCTTCACCGAGTTGAAGGCCATCATCCAA
GATCTGCAAGTGTCTCTCAGAAAAGGAGATGATGCAGTTCTTCAAGCCAAGATCCAGTCG
TACATCCGCTTGGTGAAGAAGGCAAAGAAACATTTCAAGACTGTGAAGAAGGTTGCCTCA
AACAAGGAGGACTGCAAGATAGTCAAACTGTTGAGTGAGGCTAGAGAGATCACTACCTCT
CTATTCCAGTCAACAGTGCATCTCTTGTCAAAGCAAATCGAGATGCCAAAATTGTCCCTC
ATCTCCAGGGCATTCCAGAAGAAAAACCTGGTGGTTTGCAATGAGGAGCAGTTGCAGGTG
TTAGAGTGCTGCATCGGAGATCTTGAGGCTGGAGCAGGGCTTCTGTTCAGGAGATTGGTC
CAAAGCAGGGTTACTCTCCTGAACATTCTTAGCCCATAG

Peptide Sequence

PEP ID

Os08t0553000-00
PEP Infomation

pep chromosome:IRGSP-1.0:8:27669431:27670789:1 gene:Os08g0553000 transcript:Os08t0553000-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF241, plant domain containing protein. (Os08t0553000-00)
Sequence

FYVLHILCINRSQHKARHIKPNFPLNSQTHQRQSLAIDMAFHQRSISLPSRPLSKVEEEL
HSIEACISSPSLTIETISDGLRRLGDIYSSIEEIMCLPSNQVCSSEQRRLLDGEMECSLE
LLDLCNAMNEVFTELKAIIQDLQVSLRKGDDAVLQAKIQSYIRLVKKAKKHFKTVKKVAS
NKEDCKIVKLLSEAREITTSLFQSTVHLLSKQIEMPKLSLISRAFQKKNLVVCNEEQLQV
LECCIGDLEAGAGLLFRRLVQSRVTLLNILSP

Transcript Sequence

Transcript ID

Os08t0553000-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:27669431:27670789:1 gene:Os08g0553000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF241, plant domain containing protein. (Os08t0553000-00)
Sequence

TCTGATGCCGTTTGTTGCCTCACTAGCAAGCAAAGGATCCATGTACAGTGGATCTTGCAG
CTGCAGGTAAAACAGGCCAGCTCCAATACACAAGGTTAAGCGTGTATGCAGCATGGATTG
CACATAATAGAACGCTAGTTGAAATTAACAAGAGAATTAAAAATTAGATAACACTATTAA
ATAATCACTTGAGAGCGTGCAATTATGCCAAGAGCCACCGGTAGAGTGAACTAACCTGCT
GGTTCTTGCTGCCAATAGTTGAGACATGACAATGTGACACCTCACTTGGAAGATAGATGG
CAGTGCATTAAAACAATAAATAACAAAGAGGCCATATGCTACAGCCAGATCTCAGCTGAA
CTGCCAGGATTCCGTTTGTCTACCATCCAATTGATTCTATGTTTTGCACATCCTTTGTAT
AAATAGGTCTCAGCACAAAGCTAGACACATCAAACCAAACTTTCCTCTCAACTCTCAGAC
TCACCAGAGACAGAGTTTAGCAATAGACATGGCTTTCCACCAAAGATCAATTAGCTTGCC
TTCTAGGCCTCTCTCCAAAGTTGAAGAGGAGCTGCACAGCATAGAGGCATGCATCTCCTC
ACCCTCCCTGACCATCGAGACGATCTCTGATGGTTTGAGGAGGCTTGGGGACATCTACAG
CTCCATTGAGGAGATCATGTGCCTGCCTAGCAACCAAGTTTGCTCATCCGAGCAGAGGAG
GTTGTTGGATGGAGAGATGGAATGCTCCCTTGAGCTACTGGATCTCTGCAACGCTATGAA
CGAGGTCTTCACCGAGTTGAAGGCCATCATCCAAGATCTGCAAGTGTCTCTCAGAAAAGG
AGATGATGCAGTTCTTCAAGCCAAGATCCAGTCGTACATCCGCTTGGTGAAGAAGGCAAA
GAAACATTTCAAGACTGTGAAGAAGGTTGCCTCAAACAAGGAGGACTGCAAGATAGTCAA
ACTGTTGAGTGAGGCTAGAGAGATCACTACCTCTCTATTCCAGTCAACAGTGCATCTCTT
GTCAAAGCAAATCGAGATGCCAAAATTGTCCCTCATCTCCAGGGCATTCCAGAAGAAAAA
CCTGGTGGTTTGCAATGAGGAGCAGTTGCAGGTGTTAGAGTGCTGCATCGGAGATCTTGA
GGCTGGAGCAGGGCTTCTGTTCAGGAGATTGGTCCAAAGCAGGGTTACTCTCCTGAACAT
TCTTAGCCCATAGATACCCCTCAAGATCTGTCACTCTTAAGACCCTGCGATTGGCGTCCA
CCTTTTAAAGGATTTGCTGATCCTTCCATCTGTATATGCCATAGACTTACTGTACAGAAA
AAAAATACATGAAAGAGATACAAAGTTTTGATCTAATTC