Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0552900-00
CDS Infomation

cds chromosome:IRGSP-1.0:8:27675520:27676439:1 gene:Os08g0552900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF241, plant domain containing protein. (Os08t0552900-00)
Sequence

ATGGCATCCATGCTTAGATCTGCAAGTGTGCCTTCCAGCCCCTGCTCCAATGAAGCCAAT
GTTGAAGAACAGCTTCAGAGCTTGAGAGCAACCATCTCTTCACCCTCTGCAACCGTCGAA
ACAATGCTTGATGGTTTCAGCAGGATTGGAGGTGTATACAGGAACATTGAGGAGATCATG
TGCTTTCCCAGCAGCCAAGTTCTCCTTTGCCAACCACAGCAGAGGAAAGCAGCAGAGCAA
GAGCTTGAGCGCTCTCTTATCTTGCTTGACCTCTGCAATGCCATGCAAGAGAGTTTCTGT
GAACTCAAGGCAAGCATCCAGGACATGCAGTTGGCTATCAAGAGAGCCGATGATGCCGCT
GTTCAAGCCAAGGTCCAGTCCTTCATCCGTCTGACCAAGAAGGCACAAAAGCAGTCGAAG
AAGATTAGCAAGAAGTCTGCTTCAGATGATCAGGAGGGATGCACGGTGCTCAAGCTGTCA
GCTGAAGCTAGAGAGGCTGCAATTTCAATGGTTGAGTCCTCGTTGCATCTCTTGTTGAAG
CAGATTGTGAAGCCGAATTCTAGCAGGTGGTCTCTTGTATCCAAGGCTTTCCAGAAGGCA
AGGATTGCATGCCAGGAGGAGCAATTGCAGGCGCTGGAGTTGGACATCAGTGATCTCGAG
AGCGGAGTTGAGACTTTATTCAGGAGATTGATCCAGAGCAGAGTTTCTCTTCTGAATGCT
CTGAGCTTGTAG

Peptide Sequence

PEP ID

Os08t0552900-00
PEP Infomation

pep chromosome:IRGSP-1.0:8:27675520:27676439:1 gene:Os08g0552900 transcript:Os08t0552900-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF241, plant domain containing protein. (Os08t0552900-00)
Sequence

MASMLRSASVPSSPCSNEANVEEQLQSLRATISSPSATVETMLDGFSRIGGVYRNIEEIM
CFPSSQVLLCQPQQRKAAEQELERSLILLDLCNAMQESFCELKASIQDMQLAIKRADDAA
VQAKVQSFIRLTKKAQKQSKKISKKSASDDQEGCTVLKLSAEAREAAISMVESSLHLLLK
QIVKPNSSRWSLVSKAFQKARIACQEEQLQALELDISDLESGVETLFRRLIQSRVSLLNA
LSL

Transcript Sequence

Transcript ID

Os08t0552900-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:27675520:27676439:1 gene:Os08g0552900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF241, plant domain containing protein. (Os08t0552900-00)
Sequence

AAACACGGTTTCTCCTGTTCTCTTCCATTTCTTCAGAAAAAAAGGAAGCACTGCACTATC
CATAGAGGCCATGGCATCCATGCTTAGATCTGCAAGTGTGCCTTCCAGCCCCTGCTCCAA
TGAAGCCAATGTTGAAGAACAGCTTCAGAGCTTGAGAGCAACCATCTCTTCACCCTCTGC
AACCGTCGAAACAATGCTTGATGGTTTCAGCAGGATTGGAGGTGTATACAGGAACATTGA
GGAGATCATGTGCTTTCCCAGCAGCCAAGTTCTCCTTTGCCAACCACAGCAGAGGAAAGC
AGCAGAGCAAGAGCTTGAGCGCTCTCTTATCTTGCTTGACCTCTGCAATGCCATGCAAGA
GAGTTTCTGTGAACTCAAGGCAAGCATCCAGGACATGCAGTTGGCTATCAAGAGAGCCGA
TGATGCCGCTGTTCAAGCCAAGGTCCAGTCCTTCATCCGTCTGACCAAGAAGGCACAAAA
GCAGTCGAAGAAGATTAGCAAGAAGTCTGCTTCAGATGATCAGGAGGGATGCACGGTGCT
CAAGCTGTCAGCTGAAGCTAGAGAGGCTGCAATTTCAATGGTTGAGTCCTCGTTGCATCT
CTTGTTGAAGCAGATTGTGAAGCCGAATTCTAGCAGGTGGTCTCTTGTATCCAAGGCTTT
CCAGAAGGCAAGGATTGCATGCCAGGAGGAGCAATTGCAGGCGCTGGAGTTGGACATCAG
TGATCTCGAGAGCGGAGTTGAGACTTTATTCAGGAGATTGATCCAGAGCAGAGTTTCTCT
TCTGAATGCTCTGAGCTTGTAGATGATACACCAACTCTTGTTCTTTGTGATCCGCGTCCA
TCTTTTAGAGGATTTGCTGATCATCAAAACAATTTTGAGAAGTGTATATACACAATAGGT
ACTGACAAAATGTACAAGAA