Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0552400-00
CDS Infomation

cds chromosome:IRGSP-1.0:8:27665567:27667468:1 gene:Os08g0552400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os08t0552400-00)
Sequence

ATGATCTGTATAAGTACTCCTCAGCACAAGGCTAGACACACCAAACGAAACTTTCATTTC
CTTCTCATCTTCTTGGCCTCAACACAGAAATACAGACCTTTAGCAACAGGCATGGCTTTC
CACCAAAGATCAATTAGCTTGCCTTCTAGGCCTCTCTCCAAAGTTGAAGAGGAGCTGCAC
AGCCTAGAAGCATGCGTCTCATCACCGTCCATGACCATCGAGATGATTTCTGATGTTTTG
AGGAGGCTTGATGACATCTACAACTCCATTGAGCAGATCATGTGCCTGCCTAGCAACCAA
ATTTGCTCATCCCAGCAGAGGAAGTTGTTGGATGGAGAGATGGAATGCTCCCTCGAGCTA
CTGGATATCTGCAATGCTATGAGTGAGGTCTTCACTGAGTTGAAGGCCATCATCCAAGAT
CTGCAAGTGTCTCTCAGAAAAGGAGATAATGCAGTTGCCAAGATCCATTCATACATCCGC
TTGGTGAAGAAGGCAAAGAAACATTTCAAGAAGACTGTGAAGGTAGCCTCAGACAAGGAA
GACTGCAAGATTGTAAAGCGGTTGAGCAAGGCTAGAGAGATCACTACCTCTCTCCTCGAG
TCAACAATGCACCTCTTGTCGAAGCAAATCCAGATGCCAAAATTGTCTCTCATCTCCAAG
GCATTCCAGAAGAAAAACCCAGTGATTTGCAATGAGGAACAGTTGCAGGTGTTAAGAGTG
CTGCATCGGAGATCTTGA

Peptide Sequence

PEP ID

Os08t0552400-00
PEP Infomation

pep chromosome:IRGSP-1.0:8:27665567:27667468:1 gene:Os08g0552400 transcript:Os08t0552400-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os08t0552400-00)
Sequence

MICISTPQHKARHTKRNFHFLLIFLASTQKYRPLATGMAFHQRSISLPSRPLSKVEEELH
SLEACVSSPSMTIEMISDVLRRLDDIYNSIEQIMCLPSNQICSSQQRKLLDGEMECSLEL
LDICNAMSEVFTELKAIIQDLQVSLRKGDNAVAKIHSYIRLVKKAKKHFKKTVKVASDKE
DCKIVKRLSKAREITTSLLESTMHLLSKQIQMPKLSLISKAFQKKNPVICNEEQLQVLRV
LHRRS

Transcript Sequence

Transcript ID

Os08t0552400-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:27665567:27667468:1 gene:Os08g0552400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os08t0552400-00)
Sequence

TCCAGAATCCACAAGATAAGAGTTGCCTGCGACAAGGAATTGTAGGTGTTAGAACTGAAC
ATTGTTAATCTAGACAATGGAATTAAGAACCTGTTCAGGAAATTGATTCAAAGTAGAGTT
TCACTTTCCGACTCCTACTTCAGCTTGAAGGTAGATTTGCGAGCTCTAATCCCCTGTGCT
TGGCACCCGCGTTTTAGAGAATTCGCCGATCGTTGAAATAGTCTCCCAATGTTTATATAA
ACATGAGAAAAATGTGTAGAAATATACTCACTGAAAAATAAAAACAGGATTCAGTCCATC
TTCTATTGTTGATTACACTGTCTATGCACATGCTTTAGTACCAAAAGGTAAAAAACTTAA
TTTCCTTAGAAGATTGATGCTCATCAATATTGACTGTCACAAAAAAAAAAAACAGATGAC
ATTAAACAACGATCTTGCTCCACCAATAAAAATAACAGGGCAGCTCCAACACAAGATGTT
GAGCGTGTAAGCGGCACGGATTGCACATAATACAACACATGTTGTAATCAACGAGAGCAC
AAGAACTAGAAAAACGCATGTCAACAGTAATACTTGTTAGCACTCTAATAAGATAATCCC
TTGAGAGCATGCAAATGTGTCAAGATCAACCGGTAGGGTGAACTAACCTGCTGGTTGTTG
CTGCCAATAGTTGGGACATGACAATGCGATAGCACATTGAGAAGATAGATGTCAGTTCAC
TAAAAAATCGAACAGCATACGAGTGATTCCATATGCTGCTGCCAGATCTCAAACCATTGA
TAGACAGCATTTGGGAGGTGAACTGGCAGGATTCTGCTTGTCTGCCATGCAAATGAAGCT
GTGTCTTGCACATGATCTGTATAAGTACTCCTCAGCACAAGGCTAGACACACCAAACGAA
ACTTTCATTTCCTTCTCATCTTCTTGGCCTCAACACAGAAATACAGACCTTTAGCAACAG
GCATGGCTTTCCACCAAAGATCAATTAGCTTGCCTTCTAGGCCTCTCTCCAAAGTTGAAG
AGGAGCTGCACAGCCTAGAAGCATGCGTCTCATCACCGTCCATGACCATCGAGATGATTT
CTGATGTTTTGAGGAGGCTTGATGACATCTACAACTCCATTGAGCAGATCATGTGCCTGC
CTAGCAACCAAATTTGCTCATCCCAGCAGAGGAAGTTGTTGGATGGAGAGATGGAATGCT
CCCTCGAGCTACTGGATATCTGCAATGCTATGAGTGAGGTCTTCACTGAGTTGAAGGCCA
TCATCCAAGATCTGCAAGTGTCTCTCAGAAAAGGAGATAATGCAGTTGCCAAGATCCATT
CATACATCCGCTTGGTGAAGAAGGCAAAGAAACATTTCAAGAAGACTGTGAAGGTAGCCT
CAGACAAGGAAGACTGCAAGATTGTAAAGCGGTTGAGCAAGGCTAGAGAGATCACTACCT
CTCTCCTCGAGTCAACAATGCACCTCTTGTCGAAGCAAATCCAGATGCCAAAATTGTCTC
TCATCTCCAAGGCATTCCAGAAGAAAAACCCAGTGATTTGCAATGAGGAACAGTTGCAGG
TGTTAAGAGTGCTGCATCGGAGATCTTGAGGCTGGGGCTGGACTTGTGTTCAGGAGATTG
GTCCAGAGCAGGGTTACTCTCCTGAACATTCTTAGCTCATAGACGCTCCTCAAAATCTGA
CACTCTTTAAGACCGTGCGATTGGCATCCACCTTTTAAAGGATTTGCTAATCCTTCCCAT
TTGTATATATCATAGACTTACTGTACAGAAAAGAAAAGATACATGAAAGAGACAGTTTTG
ATCTAGTTCTTTCCATGTGCTT