Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0550200-01
CDS Infomation	cds chromosome:IRGSP-1.0:8:27592835:27598698:-1 gene:Os08g0550200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Multi antimicrobial extrusion protein MatE family protein. (Os08t0550200-01)
Sequence	ATGAGCAGTACGAGTGGATCTGCATGGGATCACAGCAACAATGGAGGCGGCGGGTCGCCG GAGTTGAGGGAGGCGCTGCTGCTGGGTGACGGCGGGTCGTCGCCGGAGTCGAGGGAGATT AAGGGGATTGCTGTGAAGAAGCAGGATGACCTGGAGGAGATCCGGAGCGTGGGGGAGCTG ATGCGGCTGGCGGCGGAGGAGAACCGGCGGCTGTGGTACCTGGCCGGTCCGGCCATCTTC ACGTCGCTGGCGCAGTACTCGCTCGGCGCCGTCACGCAGGTGTTCGCCGGACACCTCACC ACGCTCGAGCTCGACGCCGTCTCCACCGAGAACATGGTCATCGCCGGCCTCGCCTTCGGG ATCATGTACGGGATGGGGAGCGCGCTGGAGACGCTATGCGGGCAAGCTTTTGGCGCGAAG CAGCATCACATGCTGGGCATCTACTTGCAGCGCTCATGGGTGATCCTCACCGCCATGAGC GTCATCCTCCTCCCCATCTACCTCTTCGCCACCCCGATCCTCCGCTTCTTCCACCAGGAC GACGAGATCGCCGTCCTCGCCAGCCGCTTCTCCCTCTACATGATCCCCCAGCTCTTCGCC TACGCCCTCAACTTCCCCATCCAGAAGTTCCTCCAGGCCCAGAGCAAGGTCATGGCCATG GCGGCCGTCTCCGCGGCGGTGCTGCTGTTCCACGTCGCGCTCACGTGGCTTCTCCTCGTG CCGCTCCGGATGGGCCTCGTCGGCCTCGCCGTCGCGCTCAACGTGTCGTGGTGGCTCGTC GTGCTCGGCCAGCTCGCCTACATCGTCATGGGCTACTGCCCTGGAGCTTGGAACGGGTTC GACTGGCTCGCGTTCACCGACCTCCTCAGCTTCGCCCGCCTCTCCCTCGGCTCCGCCATC ATGATCTGCCTCGAGTTCTGGTTCTACATGTTCCTCATCGTCATTGTCGGTAACCTCCCC AATGCCCAGGTCGCCGTCGCCGCCGTCTCCATCTGCACGAACCTGTTTGGGTGGCAGATC ATGGTGTTCTTCGGGTTCAACGCGGCGATCAGCGTGAGGGTGTCGAACGAGCTGGGCGCG GGGCGGCCGCGGGCGGCGAGGCTCGCGATCGCGGTGGTGCTCGTGTCCTCGGTCGCCATC GGCGTCGCCTTCTTCGCGGCGGTGCTGCTGCTCCGCGACGTGTACGGCGCGCCGTTCACG GGCAGCCCGGAGGTGGTGCGCGCGGTGGCGAGCCTGGGCGTGGTGTTCGCCTTCTCGCTC CTCCTCAACAGCGTCCAGCCGGTGCTCTCCGGCGTGGCCGTCGGCGCCGGGTGGCAGTGG CTGGTGGCGTACATCAACCTGGGCTGCTACTACTGCGTCGGCATCCCCGTCGGCTACGCC ATCGCGTTCCCGCTCCGCCGCGGCGTGCAGGGGATGTGGGGCGGGATGCTCACTGGCGTC GGGCTGCAGACGGCGATCCTGGTGGCGATCACGGCGCGCACCAACTGGAACAAGGAGGCC AGCGAGGCGCACGCCAGGATCCAGCACTGGGGTGGCACGGCCAAGCTCGCCGTCGACGAC CCCATCTAG

Peptide Sequence

PEP ID	Os08t0550200-01
PEP Infomation	pep chromosome:IRGSP-1.0:8:27592835:27598698:-1 gene:Os08g0550200 transcript:Os08t0550200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Multi antimicrobial extrusion protein MatE family protein. (Os08t0550200-01)
Sequence	MSSTSGSAWDHSNNGGGGSPELREALLLGDGGSSPESREIKGIAVKKQDDLEEIRSVGEL MRLAAEENRRLWYLAGPAIFTSLAQYSLGAVTQVFAGHLTTLELDAVSTENMVIAGLAFG IMYGMGSALETLCGQAFGAKQHHMLGIYLQRSWVILTAMSVILLPIYLFATPILRFFHQD DEIAVLASRFSLYMIPQLFAYALNFPIQKFLQAQSKVMAMAAVSAAVLLFHVALTWLLLV PLRMGLVGLAVALNVSWWLVVLGQLAYIVMGYCPGAWNGFDWLAFTDLLSFARLSLGSAI MICLEFWFYMFLIVIVGNLPNAQVAVAAVSICTNLFGWQIMVFFGFNAAISVRVSNELGA GRPRAARLAIAVVLVSSVAIGVAFFAAVLLLRDVYGAPFTGSPEVVRAVASLGVVFAFSL LLNSVQPVLSGVAVGAGWQWLVAYINLGCYYCVGIPVGYAIAFPLRRGVQGMWGGMLTGV GLQTAILVAITARTNWNKEASEAHARIQHWGGTAKLAVDDPI

Transcript Sequence

Transcript ID	Os08t0550200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:27592835:27598698:-1 gene:Os08g0550200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Multi antimicrobial extrusion protein MatE family protein. (Os08t0550200-01)
Sequence	GCGTCAAACCTCTCCATCGGTCGATTCAGAGAGAGATCGAGATCAGCGTGAGAGAGAGAG AGAGAATGAGCAGTACGAGTGGATCTGCATGGGATCACAGCAACAATGGAGGCGGCGGGT CGCCGGAGTTGAGGGAGGCGCTGCTGCTGGGTGACGGCGGGTCGTCGCCGGAGTCGAGGG AGATTAAGGGGATTGCTGTGAAGAAGCAGGATGACCTGGAGGAGATCCGGAGCGTGGGGG AGCTGATGCGGCTGGCGGCGGAGGAGAACCGGCGGCTGTGGTACCTGGCCGGTCCGGCCA TCTTCACGTCGCTGGCGCAGTACTCGCTCGGCGCCGTCACGCAGGTGTTCGCCGGACACC TCACCACGCTCGAGCTCGACGCCGTCTCCACCGAGAACATGGTCATCGCCGGCCTCGCCT TCGGGATCATGTACGGGATGGGGAGCGCGCTGGAGACGCTATGCGGGCAAGCTTTTGGCG CGAAGCAGCATCACATGCTGGGCATCTACTTGCAGCGCTCATGGGTGATCCTCACCGCCA TGAGCGTCATCCTCCTCCCCATCTACCTCTTCGCCACCCCGATCCTCCGCTTCTTCCACC AGGACGACGAGATCGCCGTCCTCGCCAGCCGCTTCTCCCTCTACATGATCCCCCAGCTCT TCGCCTACGCCCTCAACTTCCCCATCCAGAAGTTCCTCCAGGCCCAGAGCAAGGTCATGG CCATGGCGGCCGTCTCCGCGGCGGTGCTGCTGTTCCACGTCGCGCTCACGTGGCTTCTCC TCGTGCCGCTCCGGATGGGCCTCGTCGGCCTCGCCGTCGCGCTCAACGTGTCGTGGTGGC TCGTCGTGCTCGGCCAGCTCGCCTACATCGTCATGGGCTACTGCCCTGGAGCTTGGAACG GGTTCGACTGGCTCGCGTTCACCGACCTCCTCAGCTTCGCCCGCCTCTCCCTCGGCTCCG CCATCATGATCTGCCTCGAGTTCTGGTTCTACATGTTCCTCATCGTCATTGTCGGTAACC TCCCCAATGCCCAGGTCGCCGTCGCCGCCGTCTCCATCTGCACGAACCTGTTTGGGTGGC AGATCATGGTGTTCTTCGGGTTCAACGCGGCGATCAGCGTGAGGGTGTCGAACGAGCTGG GCGCGGGGCGGCCGCGGGCGGCGAGGCTCGCGATCGCGGTGGTGCTCGTGTCCTCGGTCG CCATCGGCGTCGCCTTCTTCGCGGCGGTGCTGCTGCTCCGCGACGTGTACGGCGCGCCGT TCACGGGCAGCCCGGAGGTGGTGCGCGCGGTGGCGAGCCTGGGCGTGGTGTTCGCCTTCT CGCTCCTCCTCAACAGCGTCCAGCCGGTGCTCTCCGGCGTGGCCGTCGGCGCCGGGTGGC AGTGGCTGGTGGCGTACATCAACCTGGGCTGCTACTACTGCGTCGGCATCCCCGTCGGCT ACGCCATCGCGTTCCCGCTCCGCCGCGGCGTGCAGGGGATGTGGGGCGGGATGCTCACTG GCGTCGGGCTGCAGACGGCGATCCTGGTGGCGATCACGGCGCGCACCAACTGGAACAAGG AGGCCAGCGAGGCGCACGCCAGGATCCAGCACTGGGGTGGCACGGCCAAGCTCGCCGTCG ACGACCCCATCTAGTTAAGCGACAGCGAGCTTCATCATCCATCCATGGCGTAAGAATTTG TAATGTACCTGCACAATGCAAGTACATGTACATCCTGTTGTCGGATTTGGTTTGAGATTC GTGCGCGTAGCATGGATTGCAATAAGAAAATGCAGATGTGTTGATATGTCGTGGTTTTGT GTATCCGAGAATGTCAATCCACGATGCAATTATGCAGTGTATGTGCACCTTGTTGTTTGT TTGGATTTGATTGGAGATTCGTGCGCGTGTAGAATAGATAAATATCATGAATAAAGCATG ATATTATATACTAGT