Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0547200-01
CDS Infomation

cds chromosome:IRGSP-1.0:8:27408979:27413880:1 gene:Os08g0547200 gene_biotype:protein_coding transcript_biotype:protein_coding description:RabGAP/TBC domain containing protein. (Os08t0547200-01)
Sequence

ATGAAGGCGCTGCGGCGATCCAGCACCTCGTCGTCGTCGTCGGCGTCGTCTTCGCCCAGG
GCGCCGTCCTCGCCGCCGCCGTGGGTCCAGCTCCGGTCCCTCCTCGTCGCCTCCTCCTCG
TCCTCCTCCTCGTCGTCGTCCTTGGCGGCGTCGGGGAATTCGGCATCCCCCGCCGCGGCG
GCGGCGGCGGCCTCCGCCTCGTTCTCGCCGGCGTCGTACTCGCCGCACTCTGATAGAGGT
GGAACTAAATCTCCGTGGTCTCGAAGGAAAAGAAAACGGCCACTTTCTTGTCGGCATTGG
AACCATCTATTTTCGTCAGATGGGAAGCTTCGTGATGGAGGAAGGAAGTTTCTAAAGAAA
GTCCGCGGTGGAGGAGTTGAACCAGAAATCAGGGCTAAAGTTTGGCCCTTTCTACTTGGA
GTATATGATTTGAATAGTACTGAAGCAGAAAGGAATGTCATACAAACAAATAAAAGGAAT
GATTATGAAAAGCTGAGGCGTAAGTGCCATCACGTTTTGCATTCCTACAAGGGAAGTGGG
CTGAATGTTATAAATGAAGCAGCCGCCTGTGAGTATCATAGTTGCAATGAAGAATCAGAG
CCGCTTAATTTGGAAAGTGTCAATACGAGGTCTTCTCCGTCACCCAAGGGATTGAAATCT
TTAAGATGTGGGATAAGCCGACAAGAGAATGCCACTGAAGGCATAGATGAAGATACAAGT
GAGTTAACTTATGTAGATCCATATTTGGCAGAATCGGAATCTTCTGATTCTGGGACTTCT
GATGAAGAGGACCTTGATAGGATGTCCGTCTCTGCCAATACGGAAGTGAACCGTGATCAA
GGTCCTAAATTTGTCAGGAGTGCCTCATCCAAGTCAGGCTTTTTTAGGAATAACAAAACT
CCAGAGGATTTCGCGACATGGCAACGCATTATACGCTTGGATGCTATCCGGACAGACCCT
GAATGGGCTTTATTATCACATAACCGAGCTGAAGTGTCCAAGGAGAAAGCACTGCAGTAC
GCAAGATCTGTTGGATTGAAAGATTATGACCATTTAGAGCCTTACATGATTTATCATGCT
GCTCGGTTAGTTGCAGTGCTTGAGGCATATGCGCTGTTTGATCCAGAGATTGGCTACTGC
CAAGGTATGAGTGACCTCTTGTCACCTATAATTGTCGTGATGGAGGAAGATCATGAAGCA
TTTTGGTGTTTTGTGGGCTTCATGAGGAAAGCGAGGCACAACTTCAGGCTCGATGAGGTT
GGAATAAGAAGGCAGCTGAAGATCGTCTCCCAGATCATCAAGCGCAAGGACTCGCACCTC
TACCGACACCTTCAGAAACTGCAGGCTGAGGACTGCTTCTTTGTATACAGAATGGTGGTG
GTTCTCTTCAGAAGGGAGCTCACTTTTGAGCAGACCCTGTGTCTGTGGGAGGTGATGTGG
GCTGATCAAGCAGCCATTCGAGCTGGGATTGGAAGATCCACATGGTCAAAGATAAGGCTG
CATGCCCCTCCAACTGATGATTTGTTGCTCTATGCCATTGCTGCCTGTGTCCTACAGAAG
AGGAAGCTCATAATTGAGAGGTATAGCAGCATGGATGAGATACTCAGGGAGTGCAACAGC
ATGGCTGGGCAGCTCGACGTCTGGAGGCTTCTAGATGATGCACATGACTTGGTGGTTAAC
CTCCATGACAAAATCTGA

Peptide Sequence

PEP ID

Os08t0547200-01
PEP Infomation

pep chromosome:IRGSP-1.0:8:27408979:27413880:1 gene:Os08g0547200 transcript:Os08t0547200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:RabGAP/TBC domain containing protein. (Os08t0547200-01)
Sequence

MKALRRSSTSSSSSASSSPRAPSSPPPWVQLRSLLVASSSSSSSSSSLAASGNSASPAAA
AAAASASFSPASYSPHSDRGGTKSPWSRRKRKRPLSCRHWNHLFSSDGKLRDGGRKFLKK
VRGGGVEPEIRAKVWPFLLGVYDLNSTEAERNVIQTNKRNDYEKLRRKCHHVLHSYKGSG
LNVINEAAACEYHSCNEESEPLNLESVNTRSSPSPKGLKSLRCGISRQENATEGIDEDTS
ELTYVDPYLAESESSDSGTSDEEDLDRMSVSANTEVNRDQGPKFVRSASSKSGFFRNNKT
PEDFATWQRIIRLDAIRTDPEWALLSHNRAEVSKEKALQYARSVGLKDYDHLEPYMIYHA
ARLVAVLEAYALFDPEIGYCQGMSDLLSPIIVVMEEDHEAFWCFVGFMRKARHNFRLDEV
GIRRQLKIVSQIIKRKDSHLYRHLQKLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVMW
ADQAAIRAGIGRSTWSKIRLHAPPTDDLLLYAIAACVLQKRKLIIERYSSMDEILRECNS
MAGQLDVWRLLDDAHDLVVNLHDKI

Transcript Sequence

Transcript ID

Os08t0547200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:27408979:27413880:1 gene:Os08g0547200 gene_biotype:protein_coding transcript_biotype:protein_coding description:RabGAP/TBC domain containing protein. (Os08t0547200-01)
Sequence

GAATCGGCGCCGCCTCCGCATCCATTCGACGGCGAGCTCTCGCCGGCGGAGGTGTGGCCT
CTGAACGGCGGATGGGGGAGGCTCGCCGCGGCGGCGCGGAGAGAGCGAGGGAGGCTTCGC
GGCCTTGCCGCTCTGGTGGTACTAGCTTGTTATTGAGCGAGTGGTGAGTAGGTGGTGGTG
GTGGGGATGAAGGCGCTGCGGCGATCCAGCACCTCGTCGTCGTCGTCGGCGTCGTCTTCG
CCCAGGGCGCCGTCCTCGCCGCCGCCGTGGGTCCAGCTCCGGTCCCTCCTCGTCGCCTCC
TCCTCGTCCTCCTCCTCGTCGTCGTCCTTGGCGGCGTCGGGGAATTCGGCATCCCCCGCC
GCGGCGGCGGCGGCGGCCTCCGCCTCGTTCTCGCCGGCGTCGTACTCGCCGCACTCTGAT
AGAGGTGGAACTAAATCTCCGTGGTCTCGAAGGAAAAGAAAACGGCCACTTTCTTGTCGG
CATTGGAACCATCTATTTTCGTCAGATGGGAAGCTTCGTGATGGAGGAAGGAAGTTTCTA
AAGAAAGTCCGCGGTGGAGGAGTTGAACCAGAAATCAGGGCTAAAGTTTGGCCCTTTCTA
CTTGGAGTATATGATTTGAATAGTACTGAAGCAGAAAGGAATGTCATACAAACAAATAAA
AGGAATGATTATGAAAAGCTGAGGCGTAAGTGCCATCACGTTTTGCATTCCTACAAGGGA
AGTGGGCTGAATGTTATAAATGAAGCAGCCGCCTGTGAGTATCATAGTTGCAATGAAGAA
TCAGAGCCGCTTAATTTGGAAAGTGTCAATACGAGGTCTTCTCCGTCACCCAAGGGATTG
AAATCTTTAAGATGTGGGATAAGCCGACAAGAGAATGCCACTGAAGGCATAGATGAAGAT
ACAAGTGAGTTAACTTATGTAGATCCATATTTGGCAGAATCGGAATCTTCTGATTCTGGG
ACTTCTGATGAAGAGGACCTTGATAGGATGTCCGTCTCTGCCAATACGGAAGTGAACCGT
GATCAAGGTCCTAAATTTGTCAGGAGTGCCTCATCCAAGTCAGGCTTTTTTAGGAATAAC
AAAACTCCAGAGGATTTCGCGACATGGCAACGCATTATACGCTTGGATGCTATCCGGACA
GACCCTGAATGGGCTTTATTATCACATAACCGAGCTGAAGTGTCCAAGGAGAAAGCACTG
CAGTACGCAAGATCTGTTGGATTGAAAGATTATGACCATTTAGAGCCTTACATGATTTAT
CATGCTGCTCGGTTAGTTGCAGTGCTTGAGGCATATGCGCTGTTTGATCCAGAGATTGGC
TACTGCCAAGGTATGAGTGACCTCTTGTCACCTATAATTGTCGTGATGGAGGAAGATCAT
GAAGCATTTTGGTGTTTTGTGGGCTTCATGAGGAAAGCGAGGCACAACTTCAGGCTCGAT
GAGGTTGGAATAAGAAGGCAGCTGAAGATCGTCTCCCAGATCATCAAGCGCAAGGACTCG
CACCTCTACCGACACCTTCAGAAACTGCAGGCTGAGGACTGCTTCTTTGTATACAGAATG
GTGGTGGTTCTCTTCAGAAGGGAGCTCACTTTTGAGCAGACCCTGTGTCTGTGGGAGGTG
ATGTGGGCTGATCAAGCAGCCATTCGAGCTGGGATTGGAAGATCCACATGGTCAAAGATA
AGGCTGCATGCCCCTCCAACTGATGATTTGTTGCTCTATGCCATTGCTGCCTGTGTCCTA
CAGAAGAGGAAGCTCATAATTGAGAGGTATAGCAGCATGGATGAGATACTCAGGGAGTGC
AACAGCATGGCTGGGCAGCTCGACGTCTGGAGGCTTCTAGATGATGCACATGACTTGGTG
GTTAACCTCCATGACAAAATCTGATGCATCTGCATTCTTTGGCAGATCGATTGTTAGAAT
TTAGAGTTACAAAATACCGTGCAAACCTCGGCGAATTCCTGAGGTGTGCTTTCACCGAAA
GGTGATCTTTTTTTTTTACCTGTTGTTTTGTCAACCCGGCATAAAGAACTCGTTCCGGGC
ATAGGAGAATGCGGTACTTAGCAAAGCTGATTTGCTATATACCTCACCAAGGCACTGGCA
ATGTAAACCGTACATTGTTTGCCGGGAAAATTTTGTTTTTGCCTTTAATGTGTATTATTG
GCAAAAACAACATTATCCCTTTAAATCTTTTATAGGAAAACAAGTTTCTTTTACCTG