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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0546700-01
CDS Infomation

cds chromosome:IRGSP-1.0:8:27376052:27378939:-1 gene:Os08g0546700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Rhomboid 14, RHOMBOID 14 description:Peptidase S54, rhomboid domain containing protein. (Os08t0546700-01)
Sequence

ATGGCGAGCAGCAGCGGCGAGGGGAAGGGTGCCGGCGGCGCGGGGTACCAGTACGCGCCG
TACGGCGGGTCGTACTACGACGAGGAGCGGCGGTGGTGGCCGTGGCTCGTGCCGACCGTG
CTCGTGGCCTGCATCGTGGTGTTCCTCGTCGAGATGTTCGTCAACGACTGCCCCCGCCAC
GGGAGCCCGCTCCGCGGCGAGTCCTGCGTCGCCGGCTTCCTCCACCAGTTCGCCTTCCAG
CCGCTCCGGGAGAACCCGCTCCTCGGGCCCTCCTCCGCCACTTTGGAGAAGATGGGAGCA
CTAGACTGGGCGAAGGTTGTTCATCAGCACCAAGCATGGCGTCTCATTAGCTGTATCTGG
CTACATGCTGGCCTAATCCACCTGATTGTCAACATGCTAAGCTTGCTATTCATCGGACTC
CGTCTTGAGCAGCAATTTGGGTTTGTGCGTATTGGAATCATCTACTTGCTATCTGGCTTT
GGCGGTAGCGTGCTGTCTGTGCTGTTTTTACGTAATAACTACATCTCCGTTGGTGCCTCT
GGAGCTTTGTTTGGCTTACTTGGGTCTATGCTCTCCGAGCTTATTATGAACTGGACTATT
TATTCCAACAAGGCAGCGGCAATCATAACTCTCCTGTTTATAATTGCAATCAATTTGGCG
ATCGGGATACTACCTCACGCTGATAACTTTGCACACATTGGTGGATTTGTGACTGGATTC
CTTCTTGGGTTTGTCCTGCTGGCAAGACCTCAATTTGGTTGGATGGAACGTCATGAGTTG
CCTCAGACTAATCAACCACGAAAGTACAGAGCATACCAGTATGTTTTGTGGGCTGTTGCA
CTCTTCTTGCTGCTAGTTGGGTTTGTGATTGCCCTGGTGATGCTTTTCAAGGGGAAGAAT
GGAAACGATGGTTGTCACTGGTGCCACTACCTGAACTGCATACCAACATCCAGATGGAAG
TGCAGTACTTAG

Peptide Sequence

PEP ID

Os08t0546700-01
PEP Infomation

pep chromosome:IRGSP-1.0:8:27376052:27378939:-1 gene:Os08g0546700 transcript:Os08t0546700-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Rhomboid 14, RHOMBOID 14 description:Peptidase S54, rhomboid domain containing protein. (Os08t0546700-01)
Sequence

MASSSGEGKGAGGAGYQYAPYGGSYYDEERRWWPWLVPTVLVACIVVFLVEMFVNDCPRH
GSPLRGESCVAGFLHQFAFQPLRENPLLGPSSATLEKMGALDWAKVVHQHQAWRLISCIW
LHAGLIHLIVNMLSLLFIGLRLEQQFGFVRIGIIYLLSGFGGSVLSVLFLRNNYISVGAS
GALFGLLGSMLSELIMNWTIYSNKAAAIITLLFIIAINLAIGILPHADNFAHIGGFVTGF
LLGFVLLARPQFGWMERHELPQTNQPRKYRAYQYVLWAVALFLLLVGFVIALVMLFKGKN
GNDGCHWCHYLNCIPTSRWKCST

Transcript Sequence

Transcript ID

Os08t0546700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:27376052:27378939:-1 gene:Os08g0546700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Rhomboid 14, RHOMBOID 14 description:Peptidase S54, rhomboid domain containing protein. (Os08t0546700-01)
Sequence

ACCACAGCAACCGCTTGCTTTGCTTCGCCCATCTGAGCTATAATTAGCTCGAGGAGAGAG
CCCTAACCCGCCGCGCCATGGCGAGCAGCAGCGGCGAGGGGAAGGGTGCCGGCGGCGCGG
GGTACCAGTACGCGCCGTACGGCGGGTCGTACTACGACGAGGAGCGGCGGTGGTGGCCGT
GGCTCGTGCCGACCGTGCTCGTGGCCTGCATCGTGGTGTTCCTCGTCGAGATGTTCGTCA
ACGACTGCCCCCGCCACGGGAGCCCGCTCCGCGGCGAGTCCTGCGTCGCCGGCTTCCTCC
ACCAGTTCGCCTTCCAGCCGCTCCGGGAGAACCCGCTCCTCGGGCCCTCCTCCGCCACTT
TGGAGAAGATGGGAGCACTAGACTGGGCGAAGGTTGTTCATCAGCACCAAGCATGGCGTC
TCATTAGCTGTATCTGGCTACATGCTGGCCTAATCCACCTGATTGTCAACATGCTAAGCT
TGCTATTCATCGGACTCCGTCTTGAGCAGCAATTTGGGTTTGTGCGTATTGGAATCATCT
ACTTGCTATCTGGCTTTGGCGGTAGCGTGCTGTCTGTGCTGTTTTTACGTAATAACTACA
TCTCCGTTGGTGCCTCTGGAGCTTTGTTTGGCTTACTTGGGTCTATGCTCTCCGAGCTTA
TTATGAACTGGACTATTTATTCCAACAAGGCAGCGGCAATCATAACTCTCCTGTTTATAA
TTGCAATCAATTTGGCGATCGGGATACTACCTCACGCTGATAACTTTGCACACATTGGTG
GATTTGTGACTGGATTCCTTCTTGGGTTTGTCCTGCTGGCAAGACCTCAATTTGGTTGGA
TGGAACGTCATGAGTTGCCTCAGACTAATCAACCACGAAAGTACAGAGCATACCAGTATG
TTTTGTGGGCTGTTGCACTCTTCTTGCTGCTAGTTGGGTTTGTGATTGCCCTGGTGATGC
TTTTCAAGGGGAAGAATGGAAACGATGGTTGTCACTGGTGCCACTACCTGAACTGCATAC
CAACATCCAGATGGAAGTGCAGTACTTAGATGCTTCAGAATTCCGTTAGCTCTTCTCCAA
ATTACAAATATTCTTCGGGAACCATTTTCAAGCTTGTGTGCTTGTAGATATCTACAAGAA
ATTTGCCACAGAGTCGAATTCTGCCCTTTCCAAAGTGTAGTACAATTTTCTGCTTTGTAA
TTTGAGATTGTAACAGCTGTTTATTTCAGCCCAACTCCATACTGCATTGCTCAAAAAATT
TGTGATGTTCAATTGGATTCTCTTATATCATCTAAAGTTCGAAACAATGTTAATGGTTAT
GGAGTCT