Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0543900-00
CDS Infomation

cds chromosome:IRGSP-1.0:8:27237307:27241279:1 gene:Os08g0543900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:b-ZIP TRANSCRIPTION FACTOR 68 description:Similar to Transcription factor RF2b. (Os08t0543900-00)
Sequence

ATGGACGACCCCGGTGCGGCCGATCCGGGGGCGCGCCCCCACCACTTGTCGCCGGGGCAG
CCGCCGGTGGTGCCGCGCTCCCCGACCCCGCTCGACCTGTCGAGCGCCGCGGCGGCGGCG
GCCGCGGCGTCGTACAGGAGGCTCTCGCCGTCGCTCCGACCGCCCGCGCACCCGCAGGCG
CGTCTCCCTTCGCCGTACCCCCAGATCCCCTCCTCGTCGTCGGCGGCGGCGGCGGGCTCG
TCGGGGCACCACGCGCGGTCGCTCTCGCAGCCGCTCTTCTTCTCGCTCGACTCGCTCCCG
CCGCTGCCGTACGCCGATCTGGCCGCGCCGCCCGCCATCCCGCCCTCCCCGCCTTCCTCG
AGCTCCGACCCGCCGCCGCCAGGGCTGCCGCCGCGGAAGGGCGGGCACCGGCGGTCGCAG
AGCGATATCCCCTTCGGGTTCTCGCACCTGAGCCCGCCCCTGCCGCCTCCCGCGCCCGTG
AAGCGGGAGGCCGCCACGGCGGCGGAGGGGTGCAGATCGGACGGCGATGACTTCGCCTTG
TACGACCTCGTCAACTCCTACATGGACCTCGACGGGATGGAGGCTCTCAACTCCTCCGAG
GAGCGGCACGAGGACCGCGACAGCCGCGCCAGCGGCACGCGCACCGGGAGCGTGGCCGAC
AGCAGCGAGAACGAGGCCGAGAGCCACTCGACTCCAGTGGAGAGGAAGGACGGAGGAGGC
AAATCCCGGCATTGCCGCAGCTTATCGGTGGACAGCTTCATCGAGAAGCTCAACTTCGAC
GAGTCACCGAAGCTGCCACTGCCGTCTCCCAGCGGTGGCCTATCCAGAAGCGGGAGCGGG
TCCTTGGATGGCGGCGCTGCATCTCTGTTTGGTGCTGAGTTTGCCAATGGGGAGTTCACT
GAAGCTGAGAAGAAGAAGATCATGGCAAATGAGCGCCTTGCCGAGATCGCTTTGACTGAT
CCTAAGAGGGTTAAAAGAATTTTGGCAAATCGGCAGTCTGCGGCAAGGTCAAAGGAGCGT
AAGATGAGGTACATTCAAGAGCTTGAGCACAAGGTTCAGGTGTTGCAGACAGAGGCTACC
ACACTCTCAGCACAGTTGACAATGCTGCAGAGGGACTCCACTGGACTAGCCACTCAGAAC
AATGAGTTGAAAATCAGGCTGCAAGCAATGGAGCAACAAGCACAGCTAAGAGATGCCCTG
AATGAAGCATTAACTGCCGAGGTCCAGCGTCTGAAACTTGCAACTGGCGAGATAACTGAC
GGTCGTATGTCAAAGGGCCTACAGCAGCAGATGAACTCCCAGCTGATTCAATTGCAACAG
CTGCAAATACAGCAACAACAGTCATCGCAGACGACGCAGCAAGGTCAGCAACAACAGCCA
CAGAAATCCGCATAG

Peptide Sequence

PEP ID

Os08t0543900-00
PEP Infomation

pep chromosome:IRGSP-1.0:8:27237307:27241279:1 gene:Os08g0543900 transcript:Os08t0543900-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:b-ZIP TRANSCRIPTION FACTOR 68 description:Similar to Transcription factor RF2b. (Os08t0543900-00)
Sequence

MDDPGAADPGARPHHLSPGQPPVVPRSPTPLDLSSAAAAAAAASYRRLSPSLRPPAHPQA
RLPSPYPQIPSSSSAAAAGSSGHHARSLSQPLFFSLDSLPPLPYADLAAPPAIPPSPPSS
SSDPPPPGLPPRKGGHRRSQSDIPFGFSHLSPPLPPPAPVKREAATAAEGCRSDGDDFAL
YDLVNSYMDLDGMEALNSSEERHEDRDSRASGTRTGSVADSSENEAESHSTPVERKDGGG
KSRHCRSLSVDSFIEKLNFDESPKLPLPSPSGGLSRSGSGSLDGGAASLFGAEFANGEFT
EAEKKKIMANERLAEIALTDPKRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEAT
TLSAQLTMLQRDSTGLATQNNELKIRLQAMEQQAQLRDALNEALTAEVQRLKLATGEITD
GRMSKGLQQQMNSQLIQLQQLQIQQQQSSQTTQQGQQQQPQKSA

Transcript Sequence

Transcript ID

Os08t0543900-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:27237307:27241279:1 gene:Os08g0543900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:b-ZIP TRANSCRIPTION FACTOR 68 description:Similar to Transcription factor RF2b. (Os08t0543900-00)
Sequence

CATCTCCTCCGCCTCGTGGTCGGCGCTCCACACTCTACCCTCGCCGAACCTTCTAGAAGA
TCCGCCGCCATGGACGACCCCGGTGCGGCCGATCCGGGGGCGCGCCCCCACCACTTGTCG
CCGGGGCAGCCGCCGGTGGTGCCGCGCTCCCCGACCCCGCTCGACCTGTCGAGCGCCGCG
GCGGCGGCGGCCGCGGCGTCGTACAGGAGGCTCTCGCCGTCGCTCCGACCGCCCGCGCAC
CCGCAGGCGCGTCTCCCTTCGCCGTACCCCCAGATCCCCTCCTCGTCGTCGGCGGCGGCG
GCGGGCTCGTCGGGGCACCACGCGCGGTCGCTCTCGCAGCCGCTCTTCTTCTCGCTCGAC
TCGCTCCCGCCGCTGCCGTACGCCGATCTGGCCGCGCCGCCCGCCATCCCGCCCTCCCCG
CCTTCCTCGAGCTCCGACCCGCCGCCGCCAGGGCTGCCGCCGCGGAAGGGCGGGCACCGG
CGGTCGCAGAGCGATATCCCCTTCGGGTTCTCGCACCTGAGCCCGCCCCTGCCGCCTCCC
GCGCCCGTGAAGCGGGAGGCCGCCACGGCGGCGGAGGGGTGCAGATCGGACGGCGATGAC
TTCGCCTTGTACGACCTCGTCAACTCCTACATGGACCTCGACGGGATGGAGGCTCTCAAC
TCCTCCGAGGAGCGGCACGAGGACCGCGACAGCCGCGCCAGCGGCACGCGCACCGGGAGC
GTGGCCGACAGCAGCGAGAACGAGGCCGAGAGCCACTCGACTCCAGTGGAGAGGAAGGAC
GGAGGAGGCAAATCCCGGCATTGCCGCAGCTTATCGGTGGACAGCTTCATCGAGAAGCTC
AACTTCGACGAGTCACCGAAGCTGCCACTGCCGTCTCCCAGCGGTGGCCTATCCAGAAGC
GGGAGCGGGTCCTTGGATGGCGGCGCTGCATCTCTGTTTGGTGCTGAGTTTGCCAATGGG
GAGTTCACTGAAGCTGAGAAGAAGAAGATCATGGCAAATGAGCGCCTTGCCGAGATCGCT
TTGACTGATCCTAAGAGGGTTAAAAGAATTTTGGCAAATCGGCAGTCTGCGGCAAGGTCA
AAGGAGCGTAAGATGAGGTACATTCAAGAGCTTGAGCACAAGGTTCAGGTGTTGCAGACA
GAGGCTACCACACTCTCAGCACAGTTGACAATGCTGCAGAGGGACTCCACTGGACTAGCC
ACTCAGAACAATGAGTTGAAAATCAGGCTGCAAGCAATGGAGCAACAAGCACAGCTAAGA
GATGCCCTGAATGAAGCATTAACTGCCGAGGTCCAGCGTCTGAAACTTGCAACTGGCGAG
ATAACTGACGGTCGTATGTCAAAGGGCCTACAGCAGCAGATGAACTCCCAGCTGATTCAA
TTGCAACAGCTGCAAATACAGCAACAACAGTCATCGCAGACGACGCAGCAAGGTCAGCAA
CAACAGCCACAGAAATCCGCATAGATCAAGGTCCAAAAAGCTGGACCTCCTATCGCAAAG
CAGTTGATTTGAAATCATGATGAGCATGATGAAATTGAAGGATGATGGTGATCCATGCTG
GGAAAAGAAGAATCTTTTGCTTATATCAGACAGATTGTAGGATAGGTATGGTGGTATAGC
AGCAGAAGATGGGTCTTCTGTTGCGAGTTCTTTTGTTCAAGGTGGTAAATGCCTTGGCTG
GAGTATCCTATCTCATCGCAATCGCATCGTATTATACATGAGTACCAGTCGCCTGGCCTG
AATAGGAGGCATCGTGTTTAGTCCTATGAAAGATTCTTTCCATGGTGCTTTTGTACTTTT
GTCCAAGAGGATAGCGTATTACAAATGTACAACAGTACTTATGCTGGCTGTAATAGTGTA
AT