Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0543700-00
CDS Infomation

cds chromosome:IRGSP-1.0:8:27223154:27223980:-1 gene:Os08g0543700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 011 description:Hypothetical conserved gene. (Os08t0543700-00)
Sequence

ATGGACGAGCTTGTACTCTCCCCTTCCTCCTTCTCCGCCACGGCCTGCTTCCCGACGCTT
GACTTCGAGTTCTGCGAGGTCCCCGACCAATGGCTGCTGGGACTCGGACACGACGAGCTC
GACAAGGATGCCGCCGCCTCCGCCTTGGCGGCGGCAGCGGCCTCGCAATCGGCGAGCAAC
GACGACGTGCCCAGGAACCCGCCCGCCACGACGACGACGACGAAGCGGCGGGGGCGGAAG
CCAGGGCCACGCTCCGGCGGCGGCGGCGCGCCCCCGATCGGCCACGTGGAGGCCGAGCGG
CAGCGGAGGGAGAAGCTCAACCGCCGGTTCTGCGAACTCCGCGCCGCCGTGCCCACCGTG
TCACGGATGGACAAGGCGTCCCTCCTCGCCGACGCCGTTGACTACATCGCCGAGCTGCGC
CGCCGCGTCGAGCGGCTCGAGGCCGAGGCGCGGAGGGCGCCGCTGGCTCCCTCCGCTGCC
GCCGCCGCCGCCTGGGCCGCGGGGCTGGGCGCCGGCGCCATCGGCCGGGATGATCTCGTG
GTGCGGATGATCGGGCGTGACGCCGCCATACTGCGCCTGACGACGGCGGCGGCGGCGGCG
CGGCACGCCCCGGCGCGCATGATGTGCGCGGTGCGGGCGCTGAACCTGGCGGTGCAGCAC
GCGTCGGTGGCGCGCGTGGGCGGCGCGACGGTGCAGGACGTGATGGTGGACGACGTGCCC
GCCGCGCTCCAGGACGAAGCCCGCCTCCGCGCCGCGCTGCTGCACACGCTGCAGCTCGCC
GACACGACCTAG

Peptide Sequence

PEP ID

Os08t0543700-00
PEP Infomation

pep chromosome:IRGSP-1.0:8:27223154:27223980:-1 gene:Os08g0543700 transcript:Os08t0543700-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 011 description:Hypothetical conserved gene. (Os08t0543700-00)
Sequence

MDELVLSPSSFSATACFPTLDFEFCEVPDQWLLGLGHDELDKDAAASALAAAAASQSASN
DDVPRNPPATTTTTKRRGRKPGPRSGGGGAPPIGHVEAERQRREKLNRRFCELRAAVPTV
SRMDKASLLADAVDYIAELRRRVERLEAEARRAPLAPSAAAAAAWAAGLGAGAIGRDDLV
VRMIGRDAAILRLTTAAAAARHAPARMMCAVRALNLAVQHASVARVGGATVQDVMVDDVP
AALQDEARLRAALLHTLQLADTT

Transcript Sequence

Transcript ID

Os08t0543700-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:27223154:27223980:-1 gene:Os08g0543700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 011 description:Hypothetical conserved gene. (Os08t0543700-00)
Sequence

GACGAGCTAGCCACCCCGGCCATGGACGAGCTTGTACTCTCCCCTTCCTCCTTCTCCGCC
ACGGCCTGCTTCCCGACGCTTGACTTCGAGTTCTGCGAGGTCCCCGACCAATGGCTGCTG
GGACTCGGACACGACGAGCTCGACAAGGATGCCGCCGCCTCCGCCTTGGCGGCGGCAGCG
GCCTCGCAATCGGCGAGCAACGACGACGTGCCCAGGAACCCGCCCGCCACGACGACGACG
ACGAAGCGGCGGGGGCGGAAGCCAGGGCCACGCTCCGGCGGCGGCGGCGCGCCCCCGATC
GGCCACGTGGAGGCCGAGCGGCAGCGGAGGGAGAAGCTCAACCGCCGGTTCTGCGAACTC
CGCGCCGCCGTGCCCACCGTGTCACGGATGGACAAGGCGTCCCTCCTCGCCGACGCCGTT
GACTACATCGCCGAGCTGCGCCGCCGCGTCGAGCGGCTCGAGGCCGAGGCGCGGAGGGCG
CCGCTGGCTCCCTCCGCTGCCGCCGCCGCCGCCTGGGCCGCGGGGCTGGGCGCCGGCGCC
ATCGGCCGGGATGATCTCGTGGTGCGGATGATCGGGCGTGACGCCGCCATACTGCGCCTG
ACGACGGCGGCGGCGGCGGCGCGGCACGCCCCGGCGCGCATGATGTGCGCGGTGCGGGCG
CTGAACCTGGCGGTGCAGCACGCGTCGGTGGCGCGCGTGGGCGGCGCGACGGTGCAGGAC
GTGATGGTGGACGACGTGCCCGCCGCGCTCCAGGACGAAGCCCGCCTCCGCGCCGCGCTG
CTGCACACGCTGCAGCTCGCCGACACGACCTAGCTCTTGCTAGCTCG