Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0543600-02
CDS Infomation

cds chromosome:IRGSP-1.0:8:27210576:27213820:-1 gene:Os08g0543600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Alpha-isopropylmalate/homocitrate synthase, conserved site domain containing protein. (Os08t0543600-01);Hypothetical conserved gene. (Os08t0543600-02)
Sequence

GGTTCACAAACTGCACAGGAGAGTTCGGCCGAGTCAACACTTGGTCAGAACAAAGGGAAC
AACATGGCTGCAAATGGTAGTGGAACAACAGATAGTAGTCAGTCAGTGAAAAGTAATGGA
GTTCCAGATTGTTCCACAAAGGGAAACAGTAATGCCTCTCCTGTACCTGTTGTTCCTTCA
TCACTGTTGGGTATAGGTGGTTTTGTTCCTTCTGCGCAGATTGCCGGGATGCATTCTTAT
ATGATGCATCCTCAAGGTGTTCCTCCATCTTTAGCATCGCCTAACTCCGCTGTTCCTCAG
TTTGGTAGTTTCCAGTCACAGTCGACAATTCAACCAAACATGCAGTGGCCCAATCAACAG
GAAGCTCAGAATGCCTCTCAGACACCAGATGAAACAAACTATCACACATCCCCACCAGAT
CAGAAGGCATTGCAACAAGCTGCTGGTAATAATGATGAGCTTTCTTTGAAGCAGAATCAG
GCAACCCGTGCAGAACATCTTACAGCTACAGCCCATGGGAAACAACAGCAACAACAACGT
TTCCCAAGTGTGGTTTCTGAATCCACTCATGAACAAAAGTTACAGGTTGTGGAATCCAAT
GTAACTGAACATTTAGTTTACAATGAGCAACAAAAGGCCCAGGATTCATCTTCAATTGTC
AGCCCTATTCGAAAATTTGAACATCAAGAGCAAACAAATGAATTCAAGGATGAAAAAGTT
GCATCGGGCAACCAGTCGGAGGAGCAGGTAGCTAGGCATCAGCATAAAGCTTCAGATTTT
GATGCATCAACTACTCAAATCCACTTGAAAGGTGGTGCAGCAGAGTTCACTGCTAACGTT
GGGAATCAGACTGACACGCATACTTCTGCTGGTGGTGGTTTGGGTTCACTCTTACCTCGC
ATACCAAAGGAGCCTTCCCTTCTAGATGAGAGATCCCTTCTGGCTTGCATTGTACGTGCA
GTTCCTGCTGGACCTGATGGCCGAATCAAGATTAGCACAACTCTACCAAATAGGCTTGGC
AAAATGTTGGCTCCTCTTCATTGGCATGACTATAAGAAGCACTATGGGAAGCTAGATGAT
TTTGTGGCTAGCCATCCAGAGCTCTTTGTGATTGAAGGAGACTTCATTCACCTTCGGGAA
GGAGCACAGCAGATCATTTCAGCTACTACAGCTGCCGCCAAAATTGCCGCTGTTGCATCT
TCGGCTCCTTACTCATTGTTACCTTCAGTTGCTGTCACTCCCGTGGCACAAAGCACTAGG
CAAAAGAGAGGACCTGTTGTTGATTCCAGATCTTCAAATGTAATGCCATCTAGAAATGGG
TCTACCACTGCTAGCTTTGGAGATCAGTTTGACAAGGGTGGACATATCCCAAAACCCAAC
GATAGTGTTGGTTATAACATTGTTCAGGGGATTGGTGATGTAACAATTGCAAGTAAAGTA
AAAGACATCCAGGAGAATGGCTTTTCAGATGAAGTTCGACCTGGGCAGTCATCCATGCAT
GCTGTTTCTGCAAATGGAGTCAGACAGGAACGATCTGGCCTTCCTGCAGGTAATACCAGG
CATGGTTATGGTGGGAAGCAACAGGGAAGGTCTACGGGGCCTGCATACATTTCCAGAAGA
TGA

Peptide Sequence

PEP ID

Os08t0543600-02
PEP Infomation

pep chromosome:IRGSP-1.0:8:27210576:27213820:-1 gene:Os08g0543600 transcript:Os08t0543600-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Alpha-isopropylmalate/homocitrate synthase, conserved site domain containing protein. (Os08t0543600-01);Hypothetical conserved gene. (Os08t0543600-02)
Sequence

GSQTAQESSAESTLGQNKGNNMAANGSGTTDSSQSVKSNGVPDCSTKGNSNASPVPVVPS
SLLGIGGFVPSAQIAGMHSYMMHPQGVPPSLASPNSAVPQFGSFQSQSTIQPNMQWPNQQ
EAQNASQTPDETNYHTSPPDQKALQQAAGNNDELSLKQNQATRAEHLTATAHGKQQQQQR
FPSVVSESTHEQKLQVVESNVTEHLVYNEQQKAQDSSSIVSPIRKFEHQEQTNEFKDEKV
ASGNQSEEQVARHQHKASDFDASTTQIHLKGGAAEFTANVGNQTDTHTSAGGGLGSLLPR
IPKEPSLLDERSLLACIVRAVPAGPDGRIKISTTLPNRLGKMLAPLHWHDYKKHYGKLDD
FVASHPELFVIEGDFIHLREGAQQIISATTAAAKIAAVASSAPYSLLPSVAVTPVAQSTR
QKRGPVVDSRSSNVMPSRNGSTTASFGDQFDKGGHIPKPNDSVGYNIVQGIGDVTIASKV
KDIQENGFSDEVRPGQSSMHAVSANGVRQERSGLPAGNTRHGYGGKQQGRSTGPAYISRR

Transcript Sequence

Transcript ID

Os08t0543600-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:27210576:27213820:-1 gene:Os08g0543600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Alpha-isopropylmalate/homocitrate synthase, conserved site domain containing protein. (Os08t0543600-01);Hypothetical conserved gene. (Os08t0543600-02)
Sequence

ATGGTTCACAAACTGCACAGGAGAGTTCGGCCGAGTCAACACTTGGTCAGAACAAAGGGA
ACAACATGGCTGCAAATGGTAGTGGAACAACAGATAGTAGTCAGTCAGTGAAAAGTAATG
GAGTTCCAGATTGTTCCACAAAGGGAAACAGTAATGCCTCTCCTGTACCTGTTGTTCCTT
CATCACTGTTGGGTATAGGTGGTTTTGTTCCTTCTGCGCAGATTGCCGGGATGCATTCTT
ATATGATGCATCCTCAAGGTGTTCCTCCATCTTTAGCATCGCCTAACTCCGCTGTTCCTC
AGTTTGGTAGTTTCCAGTCACAGTCGACAATTCAACCAAACATGCAGTGGCCCAATCAAC
AGGAAGCTCAGAATGCCTCTCAGACACCAGATGAAACAAACTATCACACATCCCCACCAG
ATCAGAAGGCATTGCAACAAGCTGCTGGTAATAATGATGAGCTTTCTTTGAAGCAGAATC
AGGCAACCCGTGCAGAACATCTTACAGCTACAGCCCATGGGAAACAACAGCAACAACAAC
GTTTCCCAAGTGTGGTTTCTGAATCCACTCATGAACAAAAGTTACAGGTTGTGGAATCCA
ATGTAACTGAACATTTAGTTTACAATGAGCAACAAAAGGCCCAGGATTCATCTTCAATTG
TCAGCCCTATTCGAAAATTTGAACATCAAGAGCAAACAAATGAATTCAAGGATGAAAAAG
TTGCATCGGGCAACCAGTCGGAGGAGCAGGTAGCTAGGCATCAGCATAAAGCTTCAGATT
TTGATGCATCAACTACTCAAATCCACTTGAAAGGTGGTGCAGCAGAGTTCACTGCTAACG
TTGGGAATCAGACTGACACGCATACTTCTGCTGGTGGTGGTTTGGGTTCACTCTTACCTC
GCATACCAAAGGAGCCTTCCCTTCTAGATGAGAGATCCCTTCTGGCTTGCATTGTACGTG
CAGTTCCTGCTGGACCTGATGGCCGAATCAAGATTAGCACAACTCTACCAAATAGGCTTG
GCAAAATGTTGGCTCCTCTTCATTGGCATGACTATAAGAAGCACTATGGGAAGCTAGATG
ATTTTGTGGCTAGCCATCCAGAGCTCTTTGTGATTGAAGGAGACTTCATTCACCTTCGGG
AAGGAGCACAGCAGATCATTTCAGCTACTACAGCTGCCGCCAAAATTGCCGCTGTTGCAT
CTTCGGCTCCTTACTCATTGTTACCTTCAGTTGCTGTCACTCCCGTGGCACAAAGCACTA
GGCAAAAGAGAGGACCTGTTGTTGATTCCAGATCTTCAAATGTAATGCCATCTAGAAATG
GGTCTACCACTGCTAGCTTTGGAGATCAGTTTGACAAGGGTGGACATATCCCAAAACCCA
ACGATAGTGTTGGTTATAACATTGTTCAGGGGATTGGTGATGTAACAATTGCAAGTAAAG
TAAAAGACATCCAGGAGAATGGCTTTTCAGATGAAGTTCGACCTGGGCAGTCATCCATGC
ATGCTGTTTCTGCAAATGGAGTCAGACAGGAACGATCTGGCCTTCCTGCAGGTAATACCA
GGCATGGTTATGGTGGGAAGCAACAGGGAAGGTCTACGGGGCCTGCATACATTTCCAGAA
GATGAGCAAGTGGCTTGTCGTTCGGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGT
GAAGCTATGTTTTGGTTTAAGGTTTAAAAGGGTTGAAGTCGAAGATGACCAGAATGAATT
GTTGTGAATTTAATTCCGCACCAATTGCTTTTCGCAGCGCCTGTATTGGGCCATGTTTTG
GCAAGTTGTACTGAAACTAGTTCCCGATCAGAAAATACTGAGGAAGTTTTGCAACC