Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0540300-01
CDS Infomation	cds chromosome:IRGSP-1.0:8:27047369:27054956:1 gene:Os08g0540300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C6HC-type domain containing protein. (Os08t0540300-01)
Sequence	ATGGACTCCGACGCCGAGATGCCCATGTCCAGCGACGAAGAGATGTTGGATGACGAGGAC TATTACGACTACAGTGATGACATGGGTGAGGACGATGATGGGAGCGGCGGCGGGGGCGGG GGAGATAGCGATGGGGAGGAGGAGGAGGAGGGGGATGAGGAGCTGGTGGGCGGCGACTAC GAGGGCCGCGAGGCGGAGGGGAGCGACGAGGTGGTGTCCCGCCGCGAGCAGAGATACATT GTATTAACTGAAAAGGATATAAATGAGCGTCAAGAGGAAGATATAGGCAAGGTATCTGCT GTACTATCGATTCGAAGGGAGGAGGCGTGTGTTCTTCTTCATCACTACAAATGGAACATC AGCAAGTTAAGCGATGAATGGTTTGCGGATGAAGAAAAAGTTCGTGATATTGTTGGATTA CTTTTAAATGGAATTGATCTTCCTAACTCTAGAAAGCTAACTTGTGGAATATGTTTTGAA GGGTATTCTTCTGATGTGATGAGTTCTGCTGATTGTGATCATTTTTATTGCCATGAATGC TGGGAAGGTTATATTAGTGCTGCAATAAGTGATGGTCCAGGATGTTTGTCATTGCGATGC CCTGATCCATCTTGTGGTGCTATGGTTCTTCAGAACATGATTAATAAGTTAGCTAAAGAT GATGATAAAGTGAGATATGCACGATTTATCTTACGTGCATATGTTGAAGATAGCAAGAAG ACTAAATGGTGTCCAGCTCCTGACTGTACATGTGCAGTGGAATTTGTCAGCGATGGGAAC TATGATGTCTCATGCAATTGCAAATTCAGTTTTTGTTGGAACTGCACGGAGGAAGCTCAT CGACCAGTGAACTGTGAGACTGTTTCTAGGTGGATATTAAAGAATAGCGCAGAATCTGAA AATATGAACTGGATACTGGCTAATTCTAAGCCGTGCCCAAAATGCAAACGACCAATAGAG AAAAACCAGGGATGCATGCATATGACTTGCACTCCACCTTGCAAATTTGAGTTCTGCTGG TTATGTCTGGGTTCATGGGCTGAACATGGGGAGAGAACTGGTGGATTTTACGCTTGTAAT CGCTATGAATCAGCAAAGAAGGAGGGAGTTTATGATGAGACTGAAGCAAGGAGGGAAAGA GCCAAAAATTCACTTGAGAGATACATGCATTACTATGAGCGCTGGGCATCTAATCAGACG TCGAGGCAGAAGGCACAAGCAGATCTGCAAAAGGCAGAAAAGGAACAACTTGCAAAATTA ACAGATGTTTTTGGAATACCGGAGACCCAACTGAAGTTCATAATTGAAGCTTGGTCACAG ATTATTGAATGCAGGCGGGTACTCAAATGGACATATGCTTATGGCTATTATCTGGACGAC AAGGTCAAGAGCGAATTTTTCGAGTACCTGCAAGGTGAAGCTGAGTCTGGTCTGGAGCGT CTTCACCAATGTGCTGAGAAAGACCTGCAATCATTTTTGACTGTGAGATCTGATAATACT GAACCTGCACCATCAATTGCTGAATTCGGTGACTTCCGGGTGAAGCTTGCGGGGCTGACA AGTGTGACTCGGAATTATTTTGAGAACCTTGTTCAAGCACTGGAGGCTGGCTTGGAGGAT GTACACTCTACTGCCCAGGGTACCACATCAAGCAATGCCACCAACATCCCCTCCAAGAAA GCAGTCACTAAAGGCAAAACAAAGAAGCAGCTTCCTAGAACATCTTCGGACAACTCAGAT GAAGGCTGGCCTTGTGAGCGCTGCACGTTTATTAACCCTTCATCGGTGGATGCATGCAGC GTCTGCGATAAGCATAGATACTAG

Peptide Sequence

PEP ID	Os08t0540300-01
PEP Infomation	pep chromosome:IRGSP-1.0:8:27047369:27054956:1 gene:Os08g0540300 transcript:Os08t0540300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C6HC-type domain containing protein. (Os08t0540300-01)
Sequence	MDSDAEMPMSSDEEMLDDEDYYDYSDDMGEDDDGSGGGGGGDSDGEEEEEGDEELVGGDY EGREAEGSDEVVSRREQRYIVLTEKDINERQEEDIGKVSAVLSIRREEACVLLHHYKWNI SKLSDEWFADEEKVRDIVGLLLNGIDLPNSRKLTCGICFEGYSSDVMSSADCDHFYCHEC WEGYISAAISDGPGCLSLRCPDPSCGAMVLQNMINKLAKDDDKVRYARFILRAYVEDSKK TKWCPAPDCTCAVEFVSDGNYDVSCNCKFSFCWNCTEEAHRPVNCETVSRWILKNSAESE NMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGSWAEHGERTGGFYACN RYESAKKEGVYDETEARRERAKNSLERYMHYYERWASNQTSRQKAQADLQKAEKEQLAKL TDVFGIPETQLKFIIEAWSQIIECRRVLKWTYAYGYYLDDKVKSEFFEYLQGEAESGLER LHQCAEKDLQSFLTVRSDNTEPAPSIAEFGDFRVKLAGLTSVTRNYFENLVQALEAGLED VHSTAQGTTSSNATNIPSKKAVTKGKTKKQLPRTSSDNSDEGWPCERCTFINPSSVDACS VCDKHRY

Transcript Sequence

Transcript ID	Os08t0540300-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:27047369:27054956:1 gene:Os08g0540300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C6HC-type domain containing protein. (Os08t0540300-01)
Sequence	CACTGGTATATAAAAAACACCCCATCCTGTGTGCCTGCCGACTCGCCCACGCAACTCCGA CTCTTTCCTTCCCCAATTCTCCCGTCCACCGGCCGCGGACCTCGCCGGAACCCTAGCCCC GCCGCCCCCCTCCCCTCCCCGATCGCCCGATTCGGTGGTCGGGGTGATGGACTCCGACGC CGAGATGCCCATGTCCAGCGACGAAGAGATGTTGGATGACGAGGACTATTACGACTACAG TGATGACATGGGTGAGGACGATGATGGGAGCGGCGGCGGGGGCGGGGGAGATAGCGATGG GGAGGAGGAGGAGGAGGGGGATGAGGAGCTGGTGGGCGGCGACTACGAGGGCCGCGAGGC GGAGGGGAGCGACGAGGTGGTGTCCCGCCGCGAGCAGAGATACATTGTATTAACTGAAAA GGATATAAATGAGCGTCAAGAGGAAGATATAGGCAAGGTATCTGCTGTACTATCGATTCG AAGGGAGGAGGCGTGTGTTCTTCTTCATCACTACAAATGGAACATCAGCAAGTTAAGCGA TGAATGGTTTGCGGATGAAGAAAAAGTTCGTGATATTGTTGGATTACTTTTAAATGGAAT TGATCTTCCTAACTCTAGAAAGCTAACTTGTGGAATATGTTTTGAAGGGTATTCTTCTGA TGTGATGAGTTCTGCTGATTGTGATCATTTTTATTGCCATGAATGCTGGGAAGGTTATAT TAGTGCTGCAATAAGTGATGGTCCAGGATGTTTGTCATTGCGATGCCCTGATCCATCTTG TGGTGCTATGGTTCTTCAGAACATGATTAATAAGTTAGCTAAAGATGATGATAAAGTGAG ATATGCACGATTTATCTTACGTGCATATGTTGAAGATAGCAAGAAGACTAAATGGTGTCC AGCTCCTGACTGTACATGTGCAGTGGAATTTGTCAGCGATGGGAACTATGATGTCTCATG CAATTGCAAATTCAGTTTTTGTTGGAACTGCACGGAGGAAGCTCATCGACCAGTGAACTG TGAGACTGTTTCTAGGTGGATATTAAAGAATAGCGCAGAATCTGAAAATATGAACTGGAT ACTGGCTAATTCTAAGCCGTGCCCAAAATGCAAACGACCAATAGAGAAAAACCAGGGATG CATGCATATGACTTGCACTCCACCTTGCAAATTTGAGTTCTGCTGGTTATGTCTGGGTTC ATGGGCTGAACATGGGGAGAGAACTGGTGGATTTTACGCTTGTAATCGCTATGAATCAGC AAAGAAGGAGGGAGTTTATGATGAGACTGAAGCAAGGAGGGAAAGAGCCAAAAATTCACT TGAGAGATACATGCATTACTATGAGCGCTGGGCATCTAATCAGACGTCGAGGCAGAAGGC ACAAGCAGATCTGCAAAAGGCAGAAAAGGAACAACTTGCAAAATTAACAGATGTTTTTGG AATACCGGAGACCCAACTGAAGTTCATAATTGAAGCTTGGTCACAGATTATTGAATGCAG GCGGGTACTCAAATGGACATATGCTTATGGCTATTATCTGGACGACAAGGTCAAGAGCGA ATTTTTCGAGTACCTGCAAGGTGAAGCTGAGTCTGGTCTGGAGCGTCTTCACCAATGTGC TGAGAAAGACCTGCAATCATTTTTGACTGTGAGATCTGATAATACTGAACCTGCACCATC AATTGCTGAATTCGGTGACTTCCGGGTGAAGCTTGCGGGGCTGACAAGTGTGACTCGGAA TTATTTTGAGAACCTTGTTCAAGCACTGGAGGCTGGCTTGGAGGATGTACACTCTACTGC CCAGGGTACCACATCAAGCAATGCCACCAACATCCCCTCCAAGAAAGCAGTCACTAAAGG CAAAACAAAGAAGCAGCTTCCTAGAACATCTTCGGACAACTCAGATGAAGGCTGGCCTTG TGAGCGCTGCACGTTTATTAACCCTTCATCGGTGGATGCATGCAGCGTCTGCGATAAGCA TAGATACTAGATGAAAAACTGGCTGAAAGCCAGTGCCCCCCATAAATCTCGAAGCTGTTG AGAAGGTGGGTGCTTACTCAAAGCTCATGAGAAGATTGTTGATTGTAGTTCTGTTCCTAA ATTATGTGGCGTTGAAGAAGAGCTTCCAATGGCAGCAATGGCGTACATGTGTGAGTGAAG GTCCCTGGTTGTATCTAGATTGCAGCAACAATGCAGGACCGACTATGGAGCGAAGGTGGA TGGGGTACAAACATGTGGTAGTCTTTTTTTTTTTTACTTTCTAGCCTATATTATGTACAT ATTAGTTATGGTCTGTAGTTGTGTTAATGTGGTGGGCAATGTTCTGTTTTTGTTTAAATG ACATGAGATGATGTGGTGGGTAAAGTTCCACCCCCTGTACTGACCAACCTGTGAAGCTGG AGAATGGTAGATGTAGCTCTTATCTATTGAGCGGTCATGTAAATTACCAAAGCTCGTCAT AATCTATGGTTGATAAATCATG