Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0539400-01
CDS Infomation	cds chromosome:IRGSP-1.0:8:26968546:26978236:-1 gene:Os08g0539400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Resistance protein T10rga2-1A. (Os08t0539400-01)
Sequence	ATGGAGTCGACGGTGCTGAGCCTTGGCAAGTCCGTGCTGAGTGGAGCGCTTGGCTACGCC CAATCCGCTGTCGCGGAGGAGGTGGCCCTGCAGCTCGGCATCCAGCGGGACCATGCCTTC ATCAGGGACGAGCTCCATATGATGCAGGCCTTCCTCATGGCCGCGGACGAGGAGCGTGAC AAGCACAAGGTTGTCAAGGCCTGGGTGCAGCAGGTCCGTGATGTCGCCTACGATGTCGAG GACTGCCTCCAGGACATGGCCGTCCGTGTCGGGAAGCCATCTTGGTGGCGCAAGTGCAGC CCAAGAATGCTGCTTGAGCGGCGTCGTGTGGCTCAGAAGATGAAGGAGCTAAGAGCCAAG GTTGAGGATGTCAGCCAGAGGAACAACCGCTACCGCCTCATCGATGGTTCTGCCTCCAAG GCAACTGATGGCATGCAGTCTAGGATTGCCGGTGCAACGACCATGTCTGAATTGGAAGAA ACAAGGCGGCAACAGGACAAAGCTAAAATGGATCTTGTTGGACTGATCAACACCAATGAC AAGGAGCTTAGAGTGATCGGGGTATGGAGAAAAAATGGTCTTCTCGATGATAAATCTATT ATCAGAAGGGCCTATGATGATCTCAAGATGAGGAAGTTTGAGTGCTACGCTTGGATCAGG CTAAAAAGTCTTTGCAATCAAACATGGTTGCTGCAGAGCATTAGCAGGCAATTGTACGAG AATTCTCTTCAAGAGACTAGGGAATTTAAAATGGAAGCAACTGATTTAGTGGACCGAATT CTACAGAAGATGGGAAACATGGAGGAAGATGATTTGGTGAGTGCATTTGAGGGATATCTG AATGAGAAGAGTTACTTGATTGTGCTTACTGACTTATCCTCTCTGGAAGAGTGGAATAAG ATAAAAATATGCTTCCCAAGCAATGATAGAGGGAGCCGAATCATATTGTGCACAGAGCAT GTTGAAGTTGCCAGACTATGTGTACCGCAAGACAGTGTACCCCCAGAGCACAAGAAATTG CTCGATGATCAGATTATCTATGCTTTCTATGAGAAGGGTTCTCAAGACGGAACACTCTTA GTGGAGCCAAGTTCTAGCTCAAACATAACCACGAGTAATGGTAACAACAATCTCACAGCT AATAAAAAGCTTGGTCGCACTGAGACGATGGTATCAACCTTGGAGGAATCTCAGCTCATC GGTCGTGCAAAAGAAAAATCTGACATTATCAAGCTAATTAAAAACCAAGTGAGTCAACAA TCTCAAGTGATCTCTATTTGGGGAATGGGTGGCCTTGGAAAAACCGCTCTAGTCCAAGAT ATATATCGAAGTCAAGATGTTAGCAGTTATTTTGATGCACGTGCTTGTGTTACAGTATTG CGCCCTTTTAACTCTGGGCAACTCATTCACAGCTTAGCTAAGCAGTTTGGAAATGAGGAA AAGAGAGATTTGTCCGAACTCTTAGAAAGAAAGAGCTATTTGGTTGTTCTCGATGATCTA TGGGATACCAAGGAATGGGATGATATGGTGGCACAATTTCCCAACAAAGCTGGAAGCTGC ATCATAGTCACCACAAGGGAAGAGAATATTGCTAAGCATTGTTCAAAAGAAACAACTAAT GCACATATATACAAGCTCAGCGGAATAGAAAATGATCAAGCACTCCAACTCTTCACTAAA AAGGTATTCAAGGAAAAGACAAATTTGGATGAACAATATCCTTACTTAGTTGAACAAGCG AATCTGATCTTGAAGAAGTGTAATGGACTTCCCCTTGCAATAGTCACCATAGGTGGTTTC TTGGCAAACCAACCAAAGACTGCTTTGGCGTGGAGGAAGATAAATGAGCATATTAGTGCT GAGCTTGAGATGAATCCAGAACTCAAGACCATTAGCACAGTCCTGCTGAAAAGCTACGAT GGTTTACCATACAAACTCAAGTCATGTTTCTTGTATCTGTCCATCTTCCCCGAAGACCAC AAGGTTAGCCGAAAACGTTTGATGCAGCGATGGACTGCTGAGGGTTACACAACGGAGGCA CGTGGCAAATCTCCAATCGAAATAGCTCATGACAACTTCATTGAGCTCATAAGTAGGAGC ATGACACTACCGGTTGCTCAAAACGCAAGTAGACCTGAGGGAGGAATAGACTATTGCCAG CTACATGATCTCATGCGTGAAATCAGCATCACAAAGTCAATGGAGGAAAACCTTGTACTT AGGCTGGAGAAAGGTTGCAGCTCAAAGACACAGGGCACAGCCCGTCATCTTGCCATAAGC AGTAATTGGGAAGGAGACAAACATGAGTTTGAGAACACAGTGGACCTGTCCCGTGTAAGG TCATTAACGGTGTTTGGAAAATGGAAACCTTTTTTCGTTTCTGAAAAGATGAGGATGCTA CGAGTGCTCGACTTGGAAGACACTGAAGGTCTAGTTGATCACCACCTTGAGCACATTGGA AAGCTTGTTCACCTAAGGTACCTTTCTCTAAGAGAATGTCACAACATTTGTCACCTGCCA GATTTGTTGTGTGACTTGAGGCAACTTGAGACACTAGACATTAGAAGCACGTTTATAGCG ATGCTGCCGAAAACCATCGTGAAGCTTCGGAAGCTAAAATATCTCCACGCTGGTAAAATC GGAATTGTGGGTCAGCAAAGTATAGCAGAGAGAAGTCTAGAGCTTTGTACTGGAGCATGC TGCGCATGCTACGTACCTCGTCTCGTGGGAGACTTCAACAGGCGTGATGCTTGCAACTAC AATTGCTGCATCCAGCCCCGTGTTCTCATGATGGACTTAGATAATGATTTCCCTATGCTA CCACGAGGGAGCAGGAAACTAAAAAGCCTGCATACACTCCGACACGTGCACTTGGCGTGG GGAAACACTGTTATACAAGAGATAGAGAGACTCACCCAGCTGCGTAAGTTAGGCGTGGTG GGCATCAACAAGAAGAATGGTCCATCCTTCTATTCAGCCATCTCCAAGCTCAGCCAGCTA GAGTCATTGTCGGTGTGTGCAGGTTGGTGTCAAGGCCTACATGGCACGTCGTCGTCGTCG TCAACCTCGCCTCCTCCGGAGAACTTGCAGAGCCTCAAGCTGCAGGGTGCGCTAGGCAAA CTGCCACAGTGGATCGGAAAGCTCCAGAATCTCGTGAAGCTGAGACTGATGTGGACCGAA CTGGAGGATGCCGATGCCGCCATCAAAGTCCTCGGGACACTGCCAAGGCTGGCCATCCTG CGCCTGTGGGAGCATTCGTTCAACGATCATGTGGTCTGTCTCAACTTCCGCCAGGAGCAG CAGGAGGCCACCGCAGTAGTATTGTTCCCGAGCCTGAGGGTGTTGGAGGTAAGTAGGATA TGTAGTCATGACCGCCTCGAATCAGTGCAGTTTGGAGGAGGCGCAACCCCCAAGCTTGAG CTGCTGCAGTTTAGTCATTTCATTGGCTCACGCGTTGGATTTTCGTCGGGGCTAGAAGAG CTCGAAAATCTCAGGGAATTCATGCTGAGTGGTAGGCAGAGGCAGTACAGGGACGACTTT GTGAAAGACGTGGAGGAGCAGCTTGCCAACCACCCAAACCCAAACAAGCCCCTTCTCAGG TTCAGTCTATATAACTAA

Peptide Sequence

PEP ID	Os08t0539400-01
PEP Infomation	pep chromosome:IRGSP-1.0:8:26968546:26978236:-1 gene:Os08g0539400 transcript:Os08t0539400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Resistance protein T10rga2-1A. (Os08t0539400-01)
Sequence	MESTVLSLGKSVLSGALGYAQSAVAEEVALQLGIQRDHAFIRDELHMMQAFLMAADEERD KHKVVKAWVQQVRDVAYDVEDCLQDMAVRVGKPSWWRKCSPRMLLERRRVAQKMKELRAK VEDVSQRNNRYRLIDGSASKATDGMQSRIAGATTMSELEETRRQQDKAKMDLVGLINTND KELRVIGVWRKNGLLDDKSIIRRAYDDLKMRKFECYAWIRLKSLCNQTWLLQSISRQLYE NSLQETREFKMEATDLVDRILQKMGNMEEDDLVSAFEGYLNEKSYLIVLTDLSSLEEWNK IKICFPSNDRGSRIILCTEHVEVARLCVPQDSVPPEHKKLLDDQIIYAFYEKGSQDGTLL VEPSSSSNITTSNGNNNLTANKKLGRTETMVSTLEESQLIGRAKEKSDIIKLIKNQVSQQ SQVISIWGMGGLGKTALVQDIYRSQDVSSYFDARACVTVLRPFNSGQLIHSLAKQFGNEE KRDLSELLERKSYLVVLDDLWDTKEWDDMVAQFPNKAGSCIIVTTREENIAKHCSKETTN AHIYKLSGIENDQALQLFTKKVFKEKTNLDEQYPYLVEQANLILKKCNGLPLAIVTIGGF LANQPKTALAWRKINEHISAELEMNPELKTISTVLLKSYDGLPYKLKSCFLYLSIFPEDH KVSRKRLMQRWTAEGYTTEARGKSPIEIAHDNFIELISRSMTLPVAQNASRPEGGIDYCQ LHDLMREISITKSMEENLVLRLEKGCSSKTQGTARHLAISSNWEGDKHEFENTVDLSRVR SLTVFGKWKPFFVSEKMRMLRVLDLEDTEGLVDHHLEHIGKLVHLRYLSLRECHNICHLP DLLCDLRQLETLDIRSTFIAMLPKTIVKLRKLKYLHAGKIGIVGQQSIAERSLELCTGAC CACYVPRLVGDFNRRDACNYNCCIQPRVLMMDLDNDFPMLPRGSRKLKSLHTLRHVHLAW GNTVIQEIERLTQLRKLGVVGINKKNGPSFYSAISKLSQLESLSVCAGWCQGLHGTSSSS STSPPPENLQSLKLQGALGKLPQWIGKLQNLVKLRLMWTELEDADAAIKVLGTLPRLAIL RLWEHSFNDHVVCLNFRQEQQEATAVVLFPSLRVLEVSRICSHDRLESVQFGGGATPKLE LLQFSHFIGSRVGFSSGLEELENLREFMLSGRQRQYRDDFVKDVEEQLANHPNPNKPLLR FSLYN

Transcript Sequence

Transcript ID	Os08t0539400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:26968546:26978236:-1 gene:Os08g0539400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Resistance protein T10rga2-1A. (Os08t0539400-01)
Sequence	ATTGCGCTAGCTGCCTGCTGCAACTTCCTCAACCACAGAATCTGCACAAATCAACCAAGA GTTGGGTGTGTACAGTGTGTGGAGAGGGAGAGAGAGCCAGGGTGGTGATGGAGTCGACGG TGCTGAGCCTTGGCAAGTCCGTGCTGAGTGGAGCGCTTGGCTACGCCCAATCCGCTGTCG CGGAGGAGGTGGCCCTGCAGCTCGGCATCCAGCGGGACCATGCCTTCATCAGGGACGAGC TCCATATGATGCAGGCCTTCCTCATGGCCGCGGACGAGGAGCGTGACAAGCACAAGGTTG TCAAGGCCTGGGTGCAGCAGGTCCGTGATGTCGCCTACGATGTCGAGGACTGCCTCCAGG ACATGGCCGTCCGTGTCGGGAAGCCATCTTGGTGGCGCAAGTGCAGCCCAAGAATGCTGC TTGAGCGGCGTCGTGTGGCTCAGAAGATGAAGGAGCTAAGAGCCAAGGTTGAGGATGTCA GCCAGAGGAACAACCGCTACCGCCTCATCGATGGTTCTGCCTCCAAGGCAACTGATGGCA TGCAGTCTAGGATTGCCGGTGCAACGACCATGTCTGAATTGGAAGAAACAAGGCGGCAAC AGGACAAAGCTAAAATGGATCTTGTTGGACTGATCAACACCAATGACAAGGAGCTTAGAG TGATCGGGGTATGGAGAAAAAATGGTCTTCTCGATGATAAATCTATTATCAGAAGGGCCT ATGATGATCTCAAGATGAGGAAGTTTGAGTGCTACGCTTGGATCAGGCTAAAAAGTCTTT GCAATCAAACATGGTTGCTGCAGAGCATTAGCAGGCAATTGTACGAGAATTCTCTTCAAG AGACTAGGGAATTTAAAATGGAAGCAACTGATTTAGTGGACCGAATTCTACAGAAGATGG GAAACATGGAGGAAGATGATTTGGTGAGTGCATTTGAGGGATATCTGAATGAGAAGAGTT ACTTGATTGTGCTTACTGACTTATCCTCTCTGGAAGAGTGGAATAAGATAAAAATATGCT TCCCAAGCAATGATAGAGGGAGCCGAATCATATTGTGCACAGAGCATGTTGAAGTTGCCA GACTATGTGTACCGCAAGACAGTGTACCCCCAGAGCACAAGAAATTGCTCGATGATCAGA TTATCTATGCTTTCTATGAGAAGGGTTCTCAAGACGGAACACTCTTAGTGGAGCCAAGTT CTAGCTCAAACATAACCACGAGTAATGGTAACAACAATCTCACAGCTAATAAAAAGCTTG GTCGCACTGAGACGATGGTATCAACCTTGGAGGAATCTCAGCTCATCGGTCGTGCAAAAG AAAAATCTGACATTATCAAGCTAATTAAAAACCAAGTGAGTCAACAATCTCAAGTGATCT CTATTTGGGGAATGGGTGGCCTTGGAAAAACCGCTCTAGTCCAAGATATATATCGAAGTC AAGATGTTAGCAGTTATTTTGATGCACGTGCTTGTGTTACAGTATTGCGCCCTTTTAACT CTGGGCAACTCATTCACAGCTTAGCTAAGCAGTTTGGAAATGAGGAAAAGAGAGATTTGT CCGAACTCTTAGAAAGAAAGAGCTATTTGGTTGTTCTCGATGATCTATGGGATACCAAGG AATGGGATGATATGGTGGCACAATTTCCCAACAAAGCTGGAAGCTGCATCATAGTCACCA CAAGGGAAGAGAATATTGCTAAGCATTGTTCAAAAGAAACAACTAATGCACATATATACA AGCTCAGCGGAATAGAAAATGATCAAGCACTCCAACTCTTCACTAAAAAGGTATTCAAGG AAAAGACAAATTTGGATGAACAATATCCTTACTTAGTTGAACAAGCGAATCTGATCTTGA AGAAGTGTAATGGACTTCCCCTTGCAATAGTCACCATAGGTGGTTTCTTGGCAAACCAAC CAAAGACTGCTTTGGCGTGGAGGAAGATAAATGAGCATATTAGTGCTGAGCTTGAGATGA ATCCAGAACTCAAGACCATTAGCACAGTCCTGCTGAAAAGCTACGATGGTTTACCATACA AACTCAAGTCATGTTTCTTGTATCTGTCCATCTTCCCCGAAGACCACAAGGTTAGCCGAA AACGTTTGATGCAGCGATGGACTGCTGAGGGTTACACAACGGAGGCACGTGGCAAATCTC CAATCGAAATAGCTCATGACAACTTCATTGAGCTCATAAGTAGGAGCATGACACTACCGG TTGCTCAAAACGCAAGTAGACCTGAGGGAGGAATAGACTATTGCCAGCTACATGATCTCA TGCGTGAAATCAGCATCACAAAGTCAATGGAGGAAAACCTTGTACTTAGGCTGGAGAAAG GTTGCAGCTCAAAGACACAGGGCACAGCCCGTCATCTTGCCATAAGCAGTAATTGGGAAG GAGACAAACATGAGTTTGAGAACACAGTGGACCTGTCCCGTGTAAGGTCATTAACGGTGT TTGGAAAATGGAAACCTTTTTTCGTTTCTGAAAAGATGAGGATGCTACGAGTGCTCGACT TGGAAGACACTGAAGGTCTAGTTGATCACCACCTTGAGCACATTGGAAAGCTTGTTCACC TAAGGTACCTTTCTCTAAGAGAATGTCACAACATTTGTCACCTGCCAGATTTGTTGTGTG ACTTGAGGCAACTTGAGACACTAGACATTAGAAGCACGTTTATAGCGATGCTGCCGAAAA CCATCGTGAAGCTTCGGAAGCTAAAATATCTCCACGCTGGTAAAATCGGAATTGTGGGTC AGCAAAGTATAGCAGAGAGAAGTCTAGAGCTTTGTACTGGAGCATGCTGCGCATGCTACG TACCTCGTCTCGTGGGAGACTTCAACAGGCGTGATGCTTGCAACTACAATTGCTGCATCC AGCCCCGTGTTCTCATGATGGACTTAGATAATGATTTCCCTATGCTACCACGAGGGAGCA GGAAACTAAAAAGCCTGCATACACTCCGACACGTGCACTTGGCGTGGGGAAACACTGTTA TACAAGAGATAGAGAGACTCACCCAGCTGCGTAAGTTAGGCGTGGTGGGCATCAACAAGA AGAATGGTCCATCCTTCTATTCAGCCATCTCCAAGCTCAGCCAGCTAGAGTCATTGTCGG TGTGTGCAGGTTGGTGTCAAGGCCTACATGGCACGTCGTCGTCGTCGTCAACCTCGCCTC CTCCGGAGAACTTGCAGAGCCTCAAGCTGCAGGGTGCGCTAGGCAAACTGCCACAGTGGA TCGGAAAGCTCCAGAATCTCGTGAAGCTGAGACTGATGTGGACCGAACTGGAGGATGCCG ATGCCGCCATCAAAGTCCTCGGGACACTGCCAAGGCTGGCCATCCTGCGCCTGTGGGAGC ATTCGTTCAACGATCATGTGGTCTGTCTCAACTTCCGCCAGGAGCAGCAGGAGGCCACCG CAGTAGTATTGTTCCCGAGCCTGAGGGTGTTGGAGGTAAGTAGGATATGTAGTCATGACC GCCTCGAATCAGTGCAGTTTGGAGGAGGCGCAACCCCCAAGCTTGAGCTGCTGCAGTTTA GTCATTTCATTGGCTCACGCGTTGGATTTTCGTCGGGGCTAGAAGAGCTCGAAAATCTCA GGGAATTCATGCTGAGTGGTAGGCAGAGGCAGTACAGGGACGACTTTGTGAAAGACGTGG AGGAGCAGCTTGCCAACCACCCAAACCCAAACAAGCCCCTTCTCAGGTTCAGTCTATATA ACTAACACCGATGGATCGATCGATCGATCGAGGGTGTATTGCTCGCTCGAGGTTGGACGG TACGCTGCAATCCCACTATAAGCTTTGAGCTTTGAGCTAATCTCTTAATCTTATTTATCT ACAAGTCTGAGTGTTCTAGTTCAGTGACTCGTATTGTATTATTGCTGCTCGTATCGTGTA TATATACTCCAGTTCAGTAGTAGCAGATGTACTCTCGTTCAAAAAAGAATAGAAACAGAT CTTGTGTCTCGCCTTGTCCTAGCAATAACATAAGCAAAGCACTGATCTAGCCAGTGTTGT ATTCGTGTGTTTAGTCCTCCATTAGCCTGGCATGCAGGTTCATTATTCAGTTATGTGCTG TATTCGTCAGTCAGTGTCTTCTACTGCATATATATATATGACAGAGTTGTACGTGCA