Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0539300-01
CDS Infomation	cds chromosome:IRGSP-1.0:8:26948601:26953317:1 gene:Os08g0539300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein OsRFPH2-10, RING-H2 protein 10, RING-H2 Finger E3 Ubiquitin Ligase 10 description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os08t0539300-01)
Sequence	ATGGATCTGGAGAGGTCGCCGCCGCCGCCGCCGCCCGAGGGAGGAGGAGGAGGAGGAGGA GGAGGCGCGTCGTGCTCCATCTGCCTGGATCCGGTGGTGGCCGGGGGCAGGTCCGTCGCC AGGCTGCAATGCGGGCACGAGTTCCACCTAGACTGCATTGGATCGGCATTTAATGCAAAA GGGGCCATGCAATGCCCTAATTGTCGGAAGATTGAGAAAGGCCGCTGGCTTTACGCAAGT GGGCACCATCCATCTCCTGATATTGATATAGGTGGCTGGGTGACTGGTGAAACCTATGAC ATCACCTCAGATATTCCATTTGGTTTTCAATGGTGCCCCTTTAGTGGATTCACCCAGCTA GCATCTGTATTTGAGGAGGGTGAAGCTGAACAAACTTCTTATCATACAGTTGGAGATCAT TCAAATGCTGCTAGCAGTTCTCTTGTTTGCCCTTACCTTGCACTGCGTGGTTTTCTCCAT CCTGTGCATGTCCCTTCTAGTTCTAGTTCTGGTGCCGAAAACAGTTCATTTCATCGGCAT CCAACTAGCTTGGAAGGCCATGCAGCCCACGATTTGAGCAATACACAAGTTTTCCATGCA ACAGAGTCAAGAAATCATGACAATGACCACCGCTATATGAGCAATCTTCCTGTGTCAGGC ATTCCTGATCATTCTGTAGCTCCATTTGGTATAGGATTGCCGAGATATGACAGCAGCAGC CAACAGAGAACAAGGCCATATGCACATCACCGTCCCCTAGTTCACAGGCCCACACCTCGC AACGGAAGCAATATGGTTACACCATTAGGGTCTGTGCCAGCTGTTATGGCTGAGACTAGA GGCCATGGTCATGGTGCGAGGGGACACATGTATCAACAGTCAATGCACTCATTGCAGAGC AGCCCATTCCCCCCTACATCTAGAAGGGTTAGGCCTAGGGCTTTAACAATTACATCTTTC ATCGCAGCATCATCCTCAGCTGAGATTGGAGGACACCATGGCTTTGCTCCTCCTGTGAAC AGGAGCAATTCCTCGGATGGTGAGGCTGTTTCTAGACCTGTTGATCGGCCATATGGGTGG GGCCAGGAGGGCTTTACCCCATTTCCCTGGATCCCAGCTGACGGTGAATCTCACTGGTGG GGCACCTTCAATCCCATGCAGAACCATACACATGGAGGCTTTACTCGAAGACCCACCGGG GAGCGAATGCCGCAGAGCCACCCAGATAGTGGATATCATTCCATGCATCCTCAGAGGATG CCGCCATTCTTGTAA

Peptide Sequence

PEP ID	Os08t0539300-01
PEP Infomation	pep chromosome:IRGSP-1.0:8:26948601:26953317:1 gene:Os08g0539300 transcript:Os08t0539300-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein OsRFPH2-10, RING-H2 protein 10, RING-H2 Finger E3 Ubiquitin Ligase 10 description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os08t0539300-01)
Sequence	MDLERSPPPPPPEGGGGGGGGGASCSICLDPVVAGGRSVARLQCGHEFHLDCIGSAFNAK GAMQCPNCRKIEKGRWLYASGHHPSPDIDIGGWVTGETYDITSDIPFGFQWCPFSGFTQL ASVFEEGEAEQTSYHTVGDHSNAASSSLVCPYLALRGFLHPVHVPSSSSSGAENSSFHRH PTSLEGHAAHDLSNTQVFHATESRNHDNDHRYMSNLPVSGIPDHSVAPFGIGLPRYDSSS QQRTRPYAHHRPLVHRPTPRNGSNMVTPLGSVPAVMAETRGHGHGARGHMYQQSMHSLQS SPFPPTSRRVRPRALTITSFIAASSSAEIGGHHGFAPPVNRSNSSDGEAVSRPVDRPYGW GQEGFTPFPWIPADGESHWWGTFNPMQNHTHGGFTRRPTGERMPQSHPDSGYHSMHPQRM PPFL

Transcript Sequence

Transcript ID	Os08t0539300-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:26948601:26953317:1 gene:Os08g0539300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein OsRFPH2-10, RING-H2 protein 10, RING-H2 Finger E3 Ubiquitin Ligase 10 description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os08t0539300-01)
Sequence	CCCTTCCTTCCTTCCTTTGGACACACCTCCCCATTTCCCTCCCTCTCTCCTCTTCCACGA GCTCACCTCTCCTCTCCTCTCCTCTCCTCTCCCGCGAGCGAGCGAGAGAGAGGCAGGCGG TGATGGATCTGGAGAGGTCGCCGCCGCCGCCGCCGCCCGAGGGAGGAGGAGGAGGAGGAG GAGGAGGCGCGTCGTGCTCCATCTGCCTGGATCCGGTGGTGGCCGGGGGCAGGTCCGTCG CCAGGCTGCAATGCGGGCACGAGTTCCACCTAGACTGCATTGGATCGGCATTTAATGCAA AAGGGGCCATGCAATGCCCTAATTGTCGGAAGATTGAGAAAGGCCGCTGGCTTTACGCAA GTGGGCACCATCCATCTCCTGATATTGATATAGGTGGCTGGGTGACTGGTGAAACCTATG ACATCACCTCAGATATTCCATTTGGTTTTCAATGGTGCCCCTTTAGTGGATTCACCCAGC TAGCATCTGTATTTGAGGAGGGTGAAGCTGAACAAACTTCTTATCATACAGTTGGAGATC ATTCAAATGCTGCTAGCAGTTCTCTTGTTTGCCCTTACCTTGCACTGCGTGGTTTTCTCC ATCCTGTGCATGTCCCTTCTAGTTCTAGTTCTGGTGCCGAAAACAGTTCATTTCATCGGC ATCCAACTAGCTTGGAAGGCCATGCAGCCCACGATTTGAGCAATACACAAGTTTTCCATG CAACAGAGTCAAGAAATCATGACAATGACCACCGCTATATGAGCAATCTTCCTGTGTCAG GCATTCCTGATCATTCTGTAGCTCCATTTGGTATAGGATTGCCGAGATATGACAGCAGCA GCCAACAGAGAACAAGGCCATATGCACATCACCGTCCCCTAGTTCACAGGCCCACACCTC GCAACGGAAGCAATATGGTTACACCATTAGGGTCTGTGCCAGCTGTTATGGCTGAGACTA GAGGCCATGGTCATGGTGCGAGGGGACACATGTATCAACAGTCAATGCACTCATTGCAGA GCAGCCCATTCCCCCCTACATCTAGAAGGGTTAGGCCTAGGGCTTTAACAATTACATCTT TCATCGCAGCATCATCCTCAGCTGAGATTGGAGGACACCATGGCTTTGCTCCTCCTGTGA ACAGGAGCAATTCCTCGGATGGTGAGGCTGTTTCTAGACCTGTTGATCGGCCATATGGGT GGGGCCAGGAGGGCTTTACCCCATTTCCCTGGATCCCAGCTGACGGTGAATCTCACTGGT GGGGCACCTTCAATCCCATGCAGAACCATACACATGGAGGCTTTACTCGAAGACCCACCG GGGAGCGAATGCCGCAGAGCCACCCAGATAGTGGATATCATTCCATGCATCCTCAGAGGA TGCCGCCATTCTTGTAAAGGTTATCTTCCTCGTTGTTTGTGTATATCTCAAAATTAGTTG GAATTATTTGCTCCGAGAGAAAACGATGAATCAGATGCTATTGTTTCCAAGGAACTAAAT GATGCTGCTTCTGTTGTCGGAATTTAGGGTTTTCTAGCTGGCAGCCCTAGGTTTGATTAA GGGTTGTGCTTTATCCTATCTCATTTGTTGCAATGGGCAGAAACTATTTGGAAACATAAG CTTAAACTGTACCAAGCAGCGATTGTTGCCATTGAACATAGTTGTGATGCCATTGATGC