Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0539200-01
CDS Infomation

cds chromosome:IRGSP-1.0:8:26945672:26946647:1 gene:Os08g0539200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os08t0539200-01)
Sequence

ATGAAGAAGATGAGGAAGGTGGCCGAGTTCTTGAGGAAGGCGGTGGTGGCGCTGAGGGGG
AAGGCCAGCGTGCTCAGGGCGAGGCTCCTCTTCCTCGCCTCGCTCCGCCGCAGGACGGCG
GTGGTCGGAGCCATCTCGCACCACCTTCGCGCGCTCATGCCGGGCAACGCTCCGGCGCCG
GCGCCGGACGGCGGCCGCCTCCCAGCGGCGGAGGACGACGACGAGCAGATGGCGCTCGAC
GACGTCGCTGGCCTCTCCGAGCTGGCCACCTTGTTCCAAGAAGTCGACGACGACGACGAC
GGCGCGCGCTACCCCGACTGGACACACTCGATGTTCGACGACGACGACGACGGCGAGGGC
GGCGGCGAGGAGGCCGTGTCGGTGATGGAGGTGATCAGGAGGCGGCGGGAGGGGGACGGG
GAGGAGTTCGACATGGAGGAGGAGATCGACCACGCCGCCGACATGTTCATACGGCGAGTC
CGCCACCGCATGGCCGCCAACCGCCGGAGCTTTTAG

Peptide Sequence

PEP ID

Os08t0539200-01
PEP Infomation

pep chromosome:IRGSP-1.0:8:26945672:26946647:1 gene:Os08g0539200 transcript:Os08t0539200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os08t0539200-01)
Sequence

MKKMRKVAEFLRKAVVALRGKASVLRARLLFLASLRRRTAVVGAISHHLRALMPGNAPAP
APDGGRLPAAEDDDEQMALDDVAGLSELATLFQEVDDDDDGARYPDWTHSMFDDDDDGEG
GGEEAVSVMEVIRRRREGDGEEFDMEEEIDHAADMFIRRVRHRMAANRRSF

Transcript Sequence

Transcript ID

Os08t0539200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:26945672:26946647:1 gene:Os08g0539200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os08t0539200-01)
Sequence

ACATGTCTCTGAACCTCCTGAACCCTCTTGCTGTCTCATCCATGCAAAGTACAGTTCAGT
TCAGTTCAGTTCAGTAATCTGCTACACATCTGAAACTGATTAGTGATTTCTTGTCTCCTG
ATCATCTGTAGTCTGTAGAACAATCCTGTTTTCTATTCTATTTTGTTTGTTGCATTTGGC
ATCATCATCTGGAAGAGAGAGTTATCTCCAGCTTAATTAATTTGATCGGTCTAGCCATGA
AGAAGATGAGGAAGGTGGCCGAGTTCTTGAGGAAGGCGGTGGTGGCGCTGAGGGGGAAGG
CCAGCGTGCTCAGGGCGAGGCTCCTCTTCCTCGCCTCGCTCCGCCGCAGGACGGCGGTGG
TCGGAGCCATCTCGCACCACCTTCGCGCGCTCATGCCGGGCAACGCTCCGGCGCCGGCGC
CGGACGGCGGCCGCCTCCCAGCGGCGGAGGACGACGACGAGCAGATGGCGCTCGACGACG
TCGCTGGCCTCTCCGAGCTGGCCACCTTGTTCCAAGAAGTCGACGACGACGACGACGGCG
CGCGCTACCCCGACTGGACACACTCGATGTTCGACGACGACGACGACGGCGAGGGCGGCG
GCGAGGAGGCCGTGTCGGTGATGGAGGTGATCAGGAGGCGGCGGGAGGGGGACGGGGAGG
AGTTCGACATGGAGGAGGAGATCGACCACGCCGCCGACATGTTCATACGGCGAGTCCGCC
ACCGCATGGCCGCCAACCGCCGGAGCTTTTAGTTAACCCGTCGGTGATGGTGGATTAGTC
CATTAATTATTAATTACCCTGAAGATTTATCATGTCTGGAATTAATTTCAGCGTGTGATA
TTTTAGCTTTGATTTGTTTTTTTTTTTGCTTCAGATTGAATTAATTTGGCTGAGGCAAAT
TGATCAGTGGTGGGTCATCTACCACTGGCTCTAATCCCTGTTCTGATCTTTTGTTCTTAC
AAGAATAATGCTTTCT