Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0539100-01
CDS Infomation	cds chromosome:IRGSP-1.0:8:26938833:26942097:-1 gene:Os08g0539100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, DHHC-type domain containing protein. (Os08t0539100-01)
Sequence	ATGGAAGGGAGGATGCAGGGGAAGGCGCCACTGTCGGATTCCAACCGGCGGATCATGGAC GCCGACGCGCCGCCGCGGCGGGTGTACCAGGGGTGGAAGGGGAGCAATATATTTTTCCTT GGAGGGAGACTTATTTTTGGGCCTGATGTGAGGTCACTCATACTCACAGTGTGTTTAATT GTAATTCCAGTGATCCTCTTTGCTGCTGTTATTTCTGGACAGCTTGACCATGAGTACCAC AACCAAATTGGAGGTTGGGTTGCATCAGTAGCTATCATCTTTACAGCATATATTATTGTC CTTCTGCTTCTCACATCTGGCCGGGATCCTGGAATTATTCCTCGAAATGCTCATCCACCA GAACCTGAAGATGTTGGTGAATCCTCCAACTTATCAGAGTGGCCAGGTGGTCAACATGGT TCGACGGGTTTACCTCTCACCAAAGATGTTCTTGTTAATGGTGTTTTAGTCAAGGTCAAA TATTGCCATACATGTATGCTATATCGTCCACCAAGGTGCTCCCATTGCTCAATCTGCAAC AACTGTGTTGAACGTTTTGATCACCACTGCCCTTGGGTAGGCCAATGCATTGGAAAGAGA AACTACCGATTCTTCTTTATGTTTGTGTCTTCAACAACTTTACTATGCGTATATGTGTTT GCATTCTGTTGGGTCGATCTCAGGATAATAATGGACACACATAGATGCAAATTAGGGAGA GCTATCATGAAATCTCCTGTCTCTGGCATTCTCATCTTGTACACATTTATTGCTGTGTGG TTTGTTGGAGGGTTGACCTCATTCCACCTCTACTTGATTTCTACCAATCAGACAACTTAT GAGAACTTCCGATACCGCTACGATAGGAAAACGAATCCTCATAACCGTGGACTGGTCCAG AATTTCATTGAGATCCTGTGTTCAAGAATCCCCAGCTCCAGAAACAACTTCAGGGCAAAA GTAAAGGAAGATTCTGCCACCTTCCCCTCATCACTCGGTATGGGGCGGGCACTAAGTCCG CCGAAGATGAGTGTGGACCTCGAGATGGGAATGAAAAGGCAAACTGTGGCCATGGAGGAA CTGGAAGACTTACACAGCCAAATCGGCAGTGCTATGGGGCTGGAGCGATGCGGCACTGAA CCCCCACATATTGTCGGTCGAAAGGGCTGCTCTGAAATTGCAACCGACATAGAAGCATTT GCTGAAGAGTTTGGCCTGGAACAAAGGTTCACTGAGAGGAAGAAGATTGAGCAACGTACA AGTCATAACCCATAG

Peptide Sequence

PEP ID	Os08t0539100-01
PEP Infomation	pep chromosome:IRGSP-1.0:8:26938833:26942097:-1 gene:Os08g0539100 transcript:Os08t0539100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, DHHC-type domain containing protein. (Os08t0539100-01)
Sequence	MEGRMQGKAPLSDSNRRIMDADAPPRRVYQGWKGSNIFFLGGRLIFGPDVRSLILTVCLI VIPVILFAAVISGQLDHEYHNQIGGWVASVAIIFTAYIIVLLLLTSGRDPGIIPRNAHPP EPEDVGESSNLSEWPGGQHGSTGLPLTKDVLVNGVLVKVKYCHTCMLYRPPRCSHCSICN NCVERFDHHCPWVGQCIGKRNYRFFFMFVSSTTLLCVYVFAFCWVDLRIIMDTHRCKLGR AIMKSPVSGILILYTFIAVWFVGGLTSFHLYLISTNQTTYENFRYRYDRKTNPHNRGLVQ NFIEILCSRIPSSRNNFRAKVKEDSATFPSSLGMGRALSPPKMSVDLEMGMKRQTVAMEE LEDLHSQIGSAMGLERCGTEPPHIVGRKGCSEIATDIEAFAEEFGLEQRFTERKKIEQRT SHNP

Transcript Sequence

Transcript ID	Os08t0539100-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:26938833:26942097:-1 gene:Os08g0539100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, DHHC-type domain containing protein. (Os08t0539100-01)
Sequence	GCGATCCCAAGGTGACATCACCACCACGCGCCGCCGATCCTCTCGCCGCCTCCAGCTCTC GAGCTCTCGTCCCCCATTGCTTCCGGAGAAGCGGACCCTGTTCTCCAGGTGGTGGGGTGG GTGCCCATTTCGTCAAATCTCGGAATATTTGAGGTTTTCTCGTGACCTGGGTTTTGGCTT TGGGACGCTGAAGATTTGGGGTTTTGCGAGTTCGATGAGGCTGCTTTGGTGAGCTTGTGG GGGGTTCTTGGGGACAGTCTTTGCAGGTGTGGAGATGGAAGGGAGGATGCAGGGGAAGGC GCCACTGTCGGATTCCAACCGGCGGATCATGGACGCCGACGCGCCGCCGCGGCGGGTGTA CCAGGGGTGGAAGGGGAGCAATATATTTTTCCTTGGAGGGAGACTTATTTTTGGGCCTGA TGTGAGGTCACTCATACTCACAGTGTGTTTAATTGTAATTCCAGTGATCCTCTTTGCTGC TGTTATTTCTGGACAGCTTGACCATGAGTACCACAACCAAATTGGAGGTTGGGTTGCATC AGTAGCTATCATCTTTACAGCATATATTATTGTCCTTCTGCTTCTCACATCTGGCCGGGA TCCTGGAATTATTCCTCGAAATGCTCATCCACCAGAACCTGAAGATGTTGGTGAATCCTC CAACTTATCAGAGTGGCCAGGTGGTCAACATGGTTCGACGGGTTTACCTCTCACCAAAGA TGTTCTTGTTAATGGTGTTTTAGTCAAGGTCAAATATTGCCATACATGTATGCTATATCG TCCACCAAGGTGCTCCCATTGCTCAATCTGCAACAACTGTGTTGAACGTTTTGATCACCA CTGCCCTTGGGTAGGCCAATGCATTGGAAAGAGAAACTACCGATTCTTCTTTATGTTTGT GTCTTCAACAACTTTACTATGCGTATATGTGTTTGCATTCTGTTGGGTCGATCTCAGGAT AATAATGGACACACATAGATGCAAATTAGGGAGAGCTATCATGAAATCTCCTGTCTCTGG CATTCTCATCTTGTACACATTTATTGCTGTGTGGTTTGTTGGAGGGTTGACCTCATTCCA CCTCTACTTGATTTCTACCAATCAGACAACTTATGAGAACTTCCGATACCGCTACGATAG GAAAACGAATCCTCATAACCGTGGACTGGTCCAGAATTTCATTGAGATCCTGTGTTCAAG AATCCCCAGCTCCAGAAACAACTTCAGGGCAAAAGTAAAGGAAGATTCTGCCACCTTCCC CTCATCACTCGGTATGGGGCGGGCACTAAGTCCGCCGAAGATGAGTGTGGACCTCGAGAT GGGAATGAAAAGGCAAACTGTGGCCATGGAGGAACTGGAAGACTTACACAGCCAAATCGG CAGTGCTATGGGGCTGGAGCGATGCGGCACTGAACCCCCACATATTGTCGGTCGAAAGGG CTGCTCTGAAATTGCAACCGACATAGAAGCATTTGCTGAAGAGTTTGGCCTGGAACAAAG GTTCACTGAGAGGAAGAAGATTGAGCAACGTACAAGTCATAACCCATAGCGCATTCCTCC CAATCCTTCTATAACCTTCAGAACCTCACCTAAAAGTGGCAAAATCTTGGGAGGAAAGAA AAGTAGGACAAATGTTAGATGATATAATAGTTTTCTCGGCTGAAATTTCCAGCCAAATTT TCGGTCATGAGTAACTGGTGTTGTTTGTATATCAAGTGGTTAGTGTTTAACAATACAGAC ATGGTGAAGCATTGAAGCCAAAGGTTTTGCTGTACTTCTGGAATGCTGGGTCTATGTACT GTGAGTCCATCTGCTGTGCTGTATATTTGGCAGTGTGCTACTGAATTTGTGTTG