Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0524100-01
CDS Infomation	cds chromosome:IRGSP-1.0:8:26062466:26069827:1 gene:Os08g0524100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Type II inositol-1,4,5-trisphosphate 5-phosphatase 12 (EC 3.1.3.36) (At5PTase12) (FRAGILE FIBER3 protein). (Os08t0524100-01)
Sequence	ATGGACTCGGACGACGAGGCGGCGGCTGCGGCCATGGCGGCGCGGGCGCGGGAGACGCTG AGGAAGAGCGCGTCGTCGTCGTCGTCGTCGCCGTACGCGCGTAGCACCGACGACGGCCCC GTCGCCTCCGCCTCGTGCGACGCGCGCCTCGAGCGCTGCTGCCGCGAGGTTGGCGCCGCG GTGGCGGTGGTGGAGGAGCCGGAGCGGGTTGTTTCGGGGGGCGGGGCGTTGCCGGAGTTT GTTGGTGAGGGAGGGGGCGAGGGGATCTACCGGGTGCCGCTGCGCGCCGCGATGCACCCG GGCCGCCCGCCGCCGCTCGAGGTGCGGCCCCACCCGCTGCGGGAGACGCAGGTGGGGTCC TTCCTGCGGGCGCTGGCGTGCGAGCCGCGGCGCCGGCAGCTCTGGGCGGGCTCCGAGTCC GGGGTCCGCGTGTGGGGGCTCGACGACGTGTTCGCCGCCGCCGGGTGCGGGGCGCGCCGC GGCGACGAGGAGAGCGCGCCCTTCAGGGAGTCCGTGCCCGTGCCGCCCGTGCTCTGCGTC GAGGCGGACGCCTCGAACGCGCTGGTGTGGACGGGCCACAAGGATGGGAGGATCATGTCG TGGCGAATGGACCTCGCCGCCGGCAGCGACGACGATGACGCGCCGTTGTTCAGGGAGGCC CTGACGTGGCAGGCACACAGCCGCACGCCAGTGCTCTCCATGGTCATCACGTCTTATGGT GAAATATGGTCAGGATCCGAAGGGGGTGTTATAAAGGCATGGCCCTGGGACGTCATTGCT AAGTCCCTCTCACTAATGCCAGAAGAAAAACATGTGGCTGCTTTACGGATTGAAAGGTCA TATATTGACCTTAGGAACAATGCAGCAGCTGGCAACATATCTTCGTTCCCCGCTGCTGAT GTGAAACACATGCTTGCTGACCATTCCCGGGCAAAAGTTTGGTGTTTAACTAGCATGGCA TTTGCTGTTTGGGATGCTCGGACCAGGGAACTGCTAAAAGTGTTTGGCATGGACGGCCAA ATTGAGTCAGCTCGGTTAGAGGCACCTGTGATGCCAGAGCAATTTATAGAGGAAGAAATC AAAGCAAAACCCGTGAAGAAGGATAAACCACAAAGCTCTTTCAATTTTTTCCAGAAATCA AGGAATGCCCTGATGGGAGCAGCTGGTGCAGTACGCAGAGTTGCTACAAAAGGGACATTT GTTGAAGATAATCGCCGAACAGAAGCAGTGGTTCAGGCAATGAATGGAACGGTTTGGTCA GGTTGCACAGATGGTTTGATCATTATGTGGGATGGAAATGGGAACCGACTGCAAGAATTC CAGCATCATTGTTCTTCTGTTCAGTGCATGAAGGCACTTGGAGAAAGGGTGTGGGTGGGC TATGCCAGTGGCATTATTCAAGTCATGGATGTGGAAGGTAACCTTCTGGCAGAATGGACT GGGCATAGCTGTCCGGTCATACAGATGGCGATTGGTGGTTCTTATGTCTTTACTCTTGCT CATCATGGTGGAATTAGAGGATGGCCTCTAGCTTCCCCTGGCCCTCTGGATGATATTCTG CGAACTGAATTGTCAAACAGGGAGTTGTCGTATAGAAGGCTAGTGAACATTAAAATGCTT GTTGGGACTTGGAATGTTGGCCAGGAGAAAGCATCTTATGAATCACTCATGTCATGGTTG GGTCGTGCATTTTTTGATGTTGACTTGGTGGTGGTTGGTCTACAAGAGGTCGAGATGGGT GCTGGTGTTCTTGCCATGGCTGCAGCCAAAGAAAGTGTAGGGCTTGAGGGTAGTGCCAAT GGTCAGTGGTGGATAGACAATATTGGCAGGACCCTTGATGAGGGGATATCCTTCCACCGA GTTGGTTCAAGGCAGCTGGCTGGATTACTTATTGCTGCATGGGCAAGGAAGGACCTTAAG CCACATGTTGGTGATGTTGATGCTGCTGCAGTACCATGTGGCTTTGGGCGTGCTATTGGC AACAAGGGTGGTGTAGGGTTAAGAATTAGAGTCTATGATCGCAGGATATGTTTTGTGAAC AATCATTTTGCTGCACATCTAGAAAATGTTAGCCGTCGTAATGCTGATTTTGATCATATC TATCGAACGATGACTTTTAACAAACCTCATGGATCTGCAGCTTCTGCTACATCTGTTCAA TTGCATAAAACCGTGAATGCCAATGGAAATCAGGTCGATGAAGATATACCTGAGATGGCA GAAGCTGATATGGTTGTCTTTCTTGGTGATTTCAACTACCGACTTTACGGTATCACCTAT GATGAAGCAAGGGACATGGTCTCTCAAAGGAGCTTTGACTGGCTTAAAGAAAGGGATCAA CTTCAAGCAGAAATGAGGGCAGGAAAGGTTTTCCAAGGAATGCGTGAAGGTTTGATCAGA TTTCCTCCGACTTACAAATTCCAAAGACACCTACCAGGTCTTGCAGGATATGACTCGGGT GAGAAGAAGAGAATACCTGCTTGGTGCGACAGAATACTGTATCGAGATAGCCGTGATGTA TTAACAGCAGAGTGCTCATTAGAATGCCCTGTTGTTGCTAAAATTACATCGTATGAAGCT TGCATGGGTGTCACAGATAGTGATCATAAACCAGTGAGGTGTGCATTTAGTGTTGATATT GCAAGAGTGGATGAGTTTACAAGAAGACAGGAATATGGAAAAATACTCCAATCTGACAAA AGATTACACAGTTTGCTTCGAGAGTCCCATTTTGTTCCAGACACTATAATCAGCACAAAC AATATAATTTTGGAAAACCAAGAACATGTTGTCCTCCGGATAACAAATGATTGTCAAAGA AACAAGGCTGCTTTTGAAATCCTGTGTGAAAGCCAGTCAATCAGCAAGCAGGATGGAACT AAATCCGAGTTTCCTCCAAGGGCATCCTTTGGGTTGCCGCTTTGGCTTGAGGTTGAACCA TCAGTTGGTCTCATTGAACCTGGGCAAACAATGGAAGTTACCGTGCACCATGAAGACTAT TACACCCAAGAAGTATTTGTCAATGGAGTACTGCAGAACTGTTGGTGCGAAGTCACCAGA GATAAGGAGGCCGTTCTTTTGGTCAATGTAACAGGTAGCACCTCAACTGAAACCATTACA CACAGGATCAATGTCAGGCATTGCTGCTCAACGATTTCTGCATCCCCGCCCATCAATCCA CCGTCTATCACAACCCCATCCGTTGATGTTCTATCGGGTGAAGCATCTACAAGAAGTTCA AAGAAGAATCCGTTGAATTATTTGCAACGTTCTGACTTTAAGCCATTCGGCAGCTCAGAG GTGCATGATTTGTGCCCCTTGTGA

Peptide Sequence

PEP ID	Os08t0524100-01
PEP Infomation	pep chromosome:IRGSP-1.0:8:26062466:26069827:1 gene:Os08g0524100 transcript:Os08t0524100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Type II inositol-1,4,5-trisphosphate 5-phosphatase 12 (EC 3.1.3.36) (At5PTase12) (FRAGILE FIBER3 protein). (Os08t0524100-01)
Sequence	MDSDDEAAAAAMAARARETLRKSASSSSSSPYARSTDDGPVASASCDARLERCCREVGAA VAVVEEPERVVSGGGALPEFVGEGGGEGIYRVPLRAAMHPGRPPPLEVRPHPLRETQVGS FLRALACEPRRRQLWAGSESGVRVWGLDDVFAAAGCGARRGDEESAPFRESVPVPPVLCV EADASNALVWTGHKDGRIMSWRMDLAAGSDDDDAPLFREALTWQAHSRTPVLSMVITSYG EIWSGSEGGVIKAWPWDVIAKSLSLMPEEKHVAALRIERSYIDLRNNAAAGNISSFPAAD VKHMLADHSRAKVWCLTSMAFAVWDARTRELLKVFGMDGQIESARLEAPVMPEQFIEEEI KAKPVKKDKPQSSFNFFQKSRNALMGAAGAVRRVATKGTFVEDNRRTEAVVQAMNGTVWS GCTDGLIIMWDGNGNRLQEFQHHCSSVQCMKALGERVWVGYASGIIQVMDVEGNLLAEWT GHSCPVIQMAIGGSYVFTLAHHGGIRGWPLASPGPLDDILRTELSNRELSYRRLVNIKML VGTWNVGQEKASYESLMSWLGRAFFDVDLVVVGLQEVEMGAGVLAMAAAKESVGLEGSAN GQWWIDNIGRTLDEGISFHRVGSRQLAGLLIAAWARKDLKPHVGDVDAAAVPCGFGRAIG NKGGVGLRIRVYDRRICFVNNHFAAHLENVSRRNADFDHIYRTMTFNKPHGSAASATSVQ LHKTVNANGNQVDEDIPEMAEADMVVFLGDFNYRLYGITYDEARDMVSQRSFDWLKERDQ LQAEMRAGKVFQGMREGLIRFPPTYKFQRHLPGLAGYDSGEKKRIPAWCDRILYRDSRDV LTAECSLECPVVAKITSYEACMGVTDSDHKPVRCAFSVDIARVDEFTRRQEYGKILQSDK RLHSLLRESHFVPDTIISTNNIILENQEHVVLRITNDCQRNKAAFEILCESQSISKQDGT KSEFPPRASFGLPLWLEVEPSVGLIEPGQTMEVTVHHEDYYTQEVFVNGVLQNCWCEVTR DKEAVLLVNVTGSTSTETITHRINVRHCCSTISASPPINPPSITTPSVDVLSGEASTRSS KKNPLNYLQRSDFKPFGSSEVHDLCPL

Transcript Sequence

Transcript ID	Os08t0524100-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:26062466:26069827:1 gene:Os08g0524100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Type II inositol-1,4,5-trisphosphate 5-phosphatase 12 (EC 3.1.3.36) (At5PTase12) (FRAGILE FIBER3 protein). (Os08t0524100-01)
Sequence	ATCGCCATCGACGACGACGACGACGAGCTCGCCTCCCCTTCCCTTCCCTCCACGGCGCGC CGCCTCCGCGACAGGTCACCCTCTTCCCTTCCATCCAAACGAGCTCGGATTTAGGATGGA CTCGGACGACGAGGCGGCGGCTGCGGCCATGGCGGCGCGGGCGCGGGAGACGCTGAGGAA GAGCGCGTCGTCGTCGTCGTCGTCGCCGTACGCGCGTAGCACCGACGACGGCCCCGTCGC CTCCGCCTCGTGCGACGCGCGCCTCGAGCGCTGCTGCCGCGAGGTTGGCGCCGCGGTGGC GGTGGTGGAGGAGCCGGAGCGGGTTGTTTCGGGGGGCGGGGCGTTGCCGGAGTTTGTTGG TGAGGGAGGGGGCGAGGGGATCTACCGGGTGCCGCTGCGCGCCGCGATGCACCCGGGCCG CCCGCCGCCGCTCGAGGTGCGGCCCCACCCGCTGCGGGAGACGCAGGTGGGGTCCTTCCT GCGGGCGCTGGCGTGCGAGCCGCGGCGCCGGCAGCTCTGGGCGGGCTCCGAGTCCGGGGT CCGCGTGTGGGGGCTCGACGACGTGTTCGCCGCCGCCGGGTGCGGGGCGCGCCGCGGCGA CGAGGAGAGCGCGCCCTTCAGGGAGTCCGTGCCCGTGCCGCCCGTGCTCTGCGTCGAGGC GGACGCCTCGAACGCGCTGGTGTGGACGGGCCACAAGGATGGGAGGATCATGTCGTGGCG AATGGACCTCGCCGCCGGCAGCGACGACGATGACGCGCCGTTGTTCAGGGAGGCCCTGAC GTGGCAGGCACACAGCCGCACGCCAGTGCTCTCCATGGTCATCACGTCTTATGGTGAAAT ATGGTCAGGATCCGAAGGGGGTGTTATAAAGGCATGGCCCTGGGACGTCATTGCTAAGTC CCTCTCACTAATGCCAGAAGAAAAACATGTGGCTGCTTTACGGATTGAAAGGTCATATAT TGACCTTAGGAACAATGCAGCAGCTGGCAACATATCTTCGTTCCCCGCTGCTGATGTGAA ACACATGCTTGCTGACCATTCCCGGGCAAAAGTTTGGTGTTTAACTAGCATGGCATTTGC TGTTTGGGATGCTCGGACCAGGGAACTGCTAAAAGTGTTTGGCATGGACGGCCAAATTGA GTCAGCTCGGTTAGAGGCACCTGTGATGCCAGAGCAATTTATAGAGGAAGAAATCAAAGC AAAACCCGTGAAGAAGGATAAACCACAAAGCTCTTTCAATTTTTTCCAGAAATCAAGGAA TGCCCTGATGGGAGCAGCTGGTGCAGTACGCAGAGTTGCTACAAAAGGGACATTTGTTGA AGATAATCGCCGAACAGAAGCAGTGGTTCAGGCAATGAATGGAACGGTTTGGTCAGGTTG CACAGATGGTTTGATCATTATGTGGGATGGAAATGGGAACCGACTGCAAGAATTCCAGCA TCATTGTTCTTCTGTTCAGTGCATGAAGGCACTTGGAGAAAGGGTGTGGGTGGGCTATGC CAGTGGCATTATTCAAGTCATGGATGTGGAAGGTAACCTTCTGGCAGAATGGACTGGGCA TAGCTGTCCGGTCATACAGATGGCGATTGGTGGTTCTTATGTCTTTACTCTTGCTCATCA TGGTGGAATTAGAGGATGGCCTCTAGCTTCCCCTGGCCCTCTGGATGATATTCTGCGAAC TGAATTGTCAAACAGGGAGTTGTCGTATAGAAGGCTAGTGAACATTAAAATGCTTGTTGG GACTTGGAATGTTGGCCAGGAGAAAGCATCTTATGAATCACTCATGTCATGGTTGGGTCG TGCATTTTTTGATGTTGACTTGGTGGTGGTTGGTCTACAAGAGGTCGAGATGGGTGCTGG TGTTCTTGCCATGGCTGCAGCCAAAGAAAGTGTAGGGCTTGAGGGTAGTGCCAATGGTCA GTGGTGGATAGACAATATTGGCAGGACCCTTGATGAGGGGATATCCTTCCACCGAGTTGG TTCAAGGCAGCTGGCTGGATTACTTATTGCTGCATGGGCAAGGAAGGACCTTAAGCCACA TGTTGGTGATGTTGATGCTGCTGCAGTACCATGTGGCTTTGGGCGTGCTATTGGCAACAA GGGTGGTGTAGGGTTAAGAATTAGAGTCTATGATCGCAGGATATGTTTTGTGAACAATCA TTTTGCTGCACATCTAGAAAATGTTAGCCGTCGTAATGCTGATTTTGATCATATCTATCG AACGATGACTTTTAACAAACCTCATGGATCTGCAGCTTCTGCTACATCTGTTCAATTGCA TAAAACCGTGAATGCCAATGGAAATCAGGTCGATGAAGATATACCTGAGATGGCAGAAGC TGATATGGTTGTCTTTCTTGGTGATTTCAACTACCGACTTTACGGTATCACCTATGATGA AGCAAGGGACATGGTCTCTCAAAGGAGCTTTGACTGGCTTAAAGAAAGGGATCAACTTCA AGCAGAAATGAGGGCAGGAAAGGTTTTCCAAGGAATGCGTGAAGGTTTGATCAGATTTCC TCCGACTTACAAATTCCAAAGACACCTACCAGGTCTTGCAGGATATGACTCGGGTGAGAA GAAGAGAATACCTGCTTGGTGCGACAGAATACTGTATCGAGATAGCCGTGATGTATTAAC AGCAGAGTGCTCATTAGAATGCCCTGTTGTTGCTAAAATTACATCGTATGAAGCTTGCAT GGGTGTCACAGATAGTGATCATAAACCAGTGAGGTGTGCATTTAGTGTTGATATTGCAAG AGTGGATGAGTTTACAAGAAGACAGGAATATGGAAAAATACTCCAATCTGACAAAAGATT ACACAGTTTGCTTCGAGAGTCCCATTTTGTTCCAGACACTATAATCAGCACAAACAATAT AATTTTGGAAAACCAAGAACATGTTGTCCTCCGGATAACAAATGATTGTCAAAGAAACAA GGCTGCTTTTGAAATCCTGTGTGAAAGCCAGTCAATCAGCAAGCAGGATGGAACTAAATC CGAGTTTCCTCCAAGGGCATCCTTTGGGTTGCCGCTTTGGCTTGAGGTTGAACCATCAGT TGGTCTCATTGAACCTGGGCAAACAATGGAAGTTACCGTGCACCATGAAGACTATTACAC CCAAGAAGTATTTGTCAATGGAGTACTGCAGAACTGTTGGTGCGAAGTCACCAGAGATAA GGAGGCCGTTCTTTTGGTCAATGTAACAGGTAGCACCTCAACTGAAACCATTACACACAG GATCAATGTCAGGCATTGCTGCTCAACGATTTCTGCATCCCCGCCCATCAATCCACCGTC TATCACAACCCCATCCGTTGATGTTCTATCGGGTGAAGCATCTACAAGAAGTTCAAAGAA GAATCCGTTGAATTATTTGCAACGTTCTGACTTTAAGCCATTCGGCAGCTCAGAGGTGCA TGATTTGTGCCCCTTGTGAAACATGTAAAAATGAGTGTGTCTGTGTGTTTTTGTCTGTTT GGTGTAGCAGTTCTGTATAGGAGTTGAGTCTTACGTTACTTACCAAAGGGAGAATTAAGG TGTCCCACTGTTAATTCTGTAGATATTCACCACTGACTTCTCACCATTCGTTGAGTAACA TCAGAAAGGAAATGTGTGCATAGTTACAAGATATCTCATGTAGTTTTTTTTTTTCCTCTT CTTTTTATAGAGGACACATGGTGATACAAAATATTCTTTACAGGTTGAATACAAAGAAAG TTACTTCG