Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0520900-00
CDS Infomation

cds chromosome:IRGSP-1.0:8:25893657:25900342:-1 gene:Os08g0520900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ISOAMYLASE 1 description:Similar to Isoamylase (Fragment). (Os08t0520900-00)
Sequence

GTGGAGGCGGTGGTGATGCCGGAGAGGTACGCGCTGGGTGGCGCGTGCAGGGTGCTCGCC
GGAATGCCCGCGCCGCTCGGGGCCACCGCGCTCGACGGCGGGGTCAATTTCGCCGTCTAC
TCCGCCGGCGCATCCGCCGCGTCGCTCTGCCTCTTCACCCCCGACGATCTCGAGGCGGAT
GAGGTGACTGAGGAGGTTCCGCTTGATCCTCTGTTCAATCGGACGGGGAATGTGTGGCAC
GTCTTCATCGAAGGCGAGCTGCACAACATGCTGTACGGGTACAGGTTCGATGGTATGTTC
GCCCCTCACTGCGGCCAGTACTTCGATGTCTCCAATGTCGTGGTGGATCCTTATGCCAAG
GCAGTGATAAGCCGAGGAGAGTATGGTGTCCCCGGTCCTGGTGGCGATTGCTGGCCTCAA
ATGGCTGGCATGATCCCTCTTCCGTACAGTACGTTTGATTGGCAAGGTGACCTACCTCTG
AGATATCCTCAGAAGGATCTTGTAATCTATGAGATGCATTTACGTGGGTTTACAAAGCAC
AGTTCAAGCAATGTAGAACATCCAGGGACTTACATTGGGGCTATATCAAAGCTTGACTAT
CTGAAGGAGCTTGGAGTTAACTGTGTAGAGTTGATGCCCTGCCATGAATTCAATGAGCTG
GAGTACTTCAGCTGCTCTTCCAAGATGAACTTCTGGGGATACTCCACGATAAACTTTTTT
TCACCAATGATAAGATATTCATCAGGTGGGATAAGAAACTGTGGCCGTGATGCCATAAAT
GAATTCAAAACTTTTGTTAGAGAGGCTCACAAACGGGGAATTGAGGTGATCATGGATGTT
GTCTTCAATCATACAGCCGAGGGTAATGAGAAAGGACCAATATTATCATTTAGGGGGATA
GATAATAGCACATACTATATGCTTGCCCCTAAGGGAGAGTTTTACAATTATTCTGGTTGT
GGGAATACCTTCAACTGTAATCATCCTGTGGTCCGTGAATTTATTGTAGATTGTTTAAGA
TACTGGGTGACAGAAATGCATGTTGATGGTTTTCGTTTTGATCTTGCATCCATAATGACC
AGAGGATGCAGTCTTTGGGATCCAGTTAATGTGTATGGAAGTCCAGTAGAAGGTGACATG
ACTACGACAGGGACACCTCTTGCTACTCCACCACTTATTGACATGATCAGCAATGATCCA
ATTCTTGGAGATGTCAAGCTCATTGCTGAAGCATGGGATGCGGGAGGCCTCTATCAAGTA
GGTCAATTTCCTCACTGGAAAATTTGGTCAGAATGGAATGGAAAGTACCGGGACATTGTT
CGTCAATTCATTAAAGGCACAGATGGATTTGCTGGTGGTTTCGCTGAATGTTTGTGTGGA
AGTCCACATCTATACCAGGCAGGGGGGAGGAAACCTTGGCACAGTATCAACTTTGTGTGT
GCGCATGATGGATTTACGCTGGCTGATTTGGTGACATATAACAAGAAGTACAACTCTTCA
AATGGTGAGGATAATAGAGATGGAGAAAATCATAACCTCAGCTGGAACTGTGGGGAGGAA
GGAGAATTTGCAGGTTTGTCGGTCAAAAGATTGAGGAAGAGGCAAATGCGCAATTTCTTT
GTTTCTCTCATGGTTTCTCAAGGTGTTCCGATGTTCTACATGGGCGATGAATATGGCCAT
ACAAAAGGAGGCAACAACAACACATACTGCCATGACCATTATGTCAATTATTTCCGCTGG
GACAAGAAAGAAGAATCCTCTGACTTGCAACGGTTCTGCTCTCTTATGACCAAATTCCGC
AAACAATGCGAGTCCCTTGGCCTCGCAGACTTCCCAACAGCTCAACGGTTGCATTGGCAT
GGCCATCAGCCTGGGAAACCTGACTGGTCTGAGACAAGCCGTTTCGTGGCCTTCTCCACG
AAAGATGAAACGAAAGGCGAGATCTACGTGGCCTTCAACGCCAGCCATTTGCCGGCGGTT
GTTGGACTCCCAGAGCGCCCAGGCTACCGCTGGGAGCCGCTGGTGGACACAGGCAAGCCA
GCGCCTTATGACTTCCTCACCGACGACCTGCCTGATCGTGCTCACGCCGTCCACCTGTTC
TCTCATTTCCTCAACTCCAATCTCTACCCCATGCTCAGCTACTCCTCCATCATCCTTGAA
TTGCAGCCTGATGATTGA

Peptide Sequence

PEP ID

Os08t0520900-00
PEP Infomation

pep chromosome:IRGSP-1.0:8:25893657:25900342:-1 gene:Os08g0520900 transcript:Os08t0520900-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ISOAMYLASE 1 description:Similar to Isoamylase (Fragment). (Os08t0520900-00)
Sequence

VEAVVMPERYALGGACRVLAGMPAPLGATALDGGVNFAVYSAGASAASLCLFTPDDLEAD
EVTEEVPLDPLFNRTGNVWHVFIEGELHNMLYGYRFDGMFAPHCGQYFDVSNVVVDPYAK
AVISRGEYGVPGPGGDCWPQMAGMIPLPYSTFDWQGDLPLRYPQKDLVIYEMHLRGFTKH
SSSNVEHPGTYIGAISKLDYLKELGVNCVELMPCHEFNELEYFSCSSKMNFWGYSTINFF
SPMIRYSSGGIRNCGRDAINEFKTFVREAHKRGIEVIMDVVFNHTAEGNEKGPILSFRGI
DNSTYYMLAPKGEFYNYSGCGNTFNCNHPVVREFIVDCLRYWVTEMHVDGFRFDLASIMT
RGCSLWDPVNVYGSPVEGDMTTTGTPLATPPLIDMISNDPILGDVKLIAEAWDAGGLYQV
GQFPHWKIWSEWNGKYRDIVRQFIKGTDGFAGGFAECLCGSPHLYQAGGRKPWHSINFVC
AHDGFTLADLVTYNKKYNSSNGEDNRDGENHNLSWNCGEEGEFAGLSVKRLRKRQMRNFF
VSLMVSQGVPMFYMGDEYGHTKGGNNNTYCHDHYVNYFRWDKKEESSDLQRFCSLMTKFR
KQCESLGLADFPTAQRLHWHGHQPGKPDWSETSRFVAFSTKDETKGEIYVAFNASHLPAV
VGLPERPGYRWEPLVDTGKPAPYDFLTDDLPDRAHAVHLFSHFLNSNLYPMLSYSSIILE
LQPDD

Transcript Sequence

Transcript ID

Os08t0520900-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:25893657:25900342:-1 gene:Os08g0520900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ISOAMYLASE 1 description:Similar to Isoamylase (Fragment). (Os08t0520900-00)
Sequence

GTGGAGGCGGTGGTGATGCCGGAGAGGTACGCGCTGGGTGGCGCGTGCAGGGTGCTCGCC
GGAATGCCCGCGCCGCTCGGGGCCACCGCGCTCGACGGCGGGGTCAATTTCGCCGTCTAC
TCCGCCGGCGCATCCGCCGCGTCGCTCTGCCTCTTCACCCCCGACGATCTCGAGGCGGAT
GAGGTGACTGAGGAGGTTCCGCTTGATCCTCTGTTCAATCGGACGGGGAATGTGTGGCAC
GTCTTCATCGAAGGCGAGCTGCACAACATGCTGTACGGGTACAGGTTCGATGGTATGTTC
GCCCCTCACTGCGGCCAGTACTTCGATGTCTCCAATGTCGTGGTGGATCCTTATGCCAAG
GCAGTGATAAGCCGAGGAGAGTATGGTGTCCCCGGTCCTGGTGGCGATTGCTGGCCTCAA
ATGGCTGGCATGATCCCTCTTCCGTACAGTACGTTTGATTGGCAAGGTGACCTACCTCTG
AGATATCCTCAGAAGGATCTTGTAATCTATGAGATGCATTTACGTGGGTTTACAAAGCAC
AGTTCAAGCAATGTAGAACATCCAGGGACTTACATTGGGGCTATATCAAAGCTTGACTAT
CTGAAGGAGCTTGGAGTTAACTGTGTAGAGTTGATGCCCTGCCATGAATTCAATGAGCTG
GAGTACTTCAGCTGCTCTTCCAAGATGAACTTCTGGGGATACTCCACGATAAACTTTTTT
TCACCAATGATAAGATATTCATCAGGTGGGATAAGAAACTGTGGCCGTGATGCCATAAAT
GAATTCAAAACTTTTGTTAGAGAGGCTCACAAACGGGGAATTGAGGTGATCATGGATGTT
GTCTTCAATCATACAGCCGAGGGTAATGAGAAAGGACCAATATTATCATTTAGGGGGATA
GATAATAGCACATACTATATGCTTGCCCCTAAGGGAGAGTTTTACAATTATTCTGGTTGT
GGGAATACCTTCAACTGTAATCATCCTGTGGTCCGTGAATTTATTGTAGATTGTTTAAGA
TACTGGGTGACAGAAATGCATGTTGATGGTTTTCGTTTTGATCTTGCATCCATAATGACC
AGAGGATGCAGTCTTTGGGATCCAGTTAATGTGTATGGAAGTCCAGTAGAAGGTGACATG
ACTACGACAGGGACACCTCTTGCTACTCCACCACTTATTGACATGATCAGCAATGATCCA
ATTCTTGGAGATGTCAAGCTCATTGCTGAAGCATGGGATGCGGGAGGCCTCTATCAAGTA
GGTCAATTTCCTCACTGGAAAATTTGGTCAGAATGGAATGGAAAGTACCGGGACATTGTT
CGTCAATTCATTAAAGGCACAGATGGATTTGCTGGTGGTTTCGCTGAATGTTTGTGTGGA
AGTCCACATCTATACCAGGCAGGGGGGAGGAAACCTTGGCACAGTATCAACTTTGTGTGT
GCGCATGATGGATTTACGCTGGCTGATTTGGTGACATATAACAAGAAGTACAACTCTTCA
AATGGTGAGGATAATAGAGATGGAGAAAATCATAACCTCAGCTGGAACTGTGGGGAGGAA
GGAGAATTTGCAGGTTTGTCGGTCAAAAGATTGAGGAAGAGGCAAATGCGCAATTTCTTT
GTTTCTCTCATGGTTTCTCAAGGTGTTCCGATGTTCTACATGGGCGATGAATATGGCCAT
ACAAAAGGAGGCAACAACAACACATACTGCCATGACCATTATGTCAATTATTTCCGCTGG
GACAAGAAAGAAGAATCCTCTGACTTGCAACGGTTCTGCTCTCTTATGACCAAATTCCGC
AAACAATGCGAGTCCCTTGGCCTCGCAGACTTCCCAACAGCTCAACGGTTGCATTGGCAT
GGCCATCAGCCTGGGAAACCTGACTGGTCTGAGACAAGCCGTTTCGTGGCCTTCTCCACG
AAAGATGAAACGAAAGGCGAGATCTACGTGGCCTTCAACGCCAGCCATTTGCCGGCGGTT
GTTGGACTCCCAGAGCGCCCAGGCTACCGCTGGGAGCCGCTGGTGGACACAGGCAAGCCA
GCGCCTTATGACTTCCTCACCGACGACCTGCCTGATCGTGCTCACGCCGTCCACCTGTTC
TCTCATTTCCTCAACTCCAATCTCTACCCCATGCTCAGCTACTCCTCCATCATCCTTGAA
TTGCAGCCTGATGATTGAAAGAACAAAGTATAGCATAGTATAGCAGAGTAAAAAACATAT
GTTTATAGCCCTTTTTGCGTATATGTTGAAGTTGTGCGGTCCTTCAATTTTG