Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0520550-01
CDS Infomation	cds chromosome:IRGSP-1.0:8:25873389:25877678:-1 gene:Os08g0520550 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Auxin response factor 21. (Os08t0520550-01)
Sequence	ATGGCGAGCTCCGGCGGAGGGGGTGGTGGTGGGGAGGAGGGGGAGGGCAGGGGGGCGACC AAGGTGAACCAGGAGCTGTGGTACGCGTGCGCGGGGCCGCTCGTCTCGCTGCCGCCGCAG GGGAGCCTCATCGTCTACTTCCCCCAGGGTCACAGCGAGCAGGTTGCAGCATCTATGCGA AAGGACGCAGATGCGCAAATTCCAAGCTATCCAAATCTTCCATCAAAGCTGATATGCATC CTCCACAGTGTCACCATGCTTGCTGATCCTGACACAGATGAGGTTTATGCTCGAATGACT CTCCAGCCAGTTAGCAATGTGACCCAGTGTGACAAGGAGACATTGCTAGCATCAGAGCTT GCGCTGAAGCAAACCAGGCCACAAACAGAATTCTTTTGCAAAACACTGACCGCCAGTGAT ACAAGCACTCATGGAGGTTTCTCTGTGCCACGCCGTGCCGCTGAGAGGATTTTTCCTCGT CTTGACTTCTCCATGCAGCCTCCTGCCCAGGAACTGCAGGCCCGGGATTTGCATGATAAT GTTTGGACATTTCGTCATATATACCGGGGTCAGCCTAAAAGGCATTTACTGACTACGGGC TGGAGCCTATTTGTCAGTGGAAAGAGATTACTTGCTGGTGATTCAGTCTTGTTTATTAGG GATGCAAAACAGCAGCTCCTCTTGGGGATCAGACGAGCAAATAGGCAACCTACGAACCTC TCATCATCTGTCTTATCTAGTGATAGTATGCATATTGGAATTCTTGCTGCAGCAGCCCAT GCTGCAGCGAATAACAGCCAATTTACAATATATTATAACCCAAGGGCCAGTACTTCCGAA TTTGTGATTCCTTTTGCCAAATACCAGAAGGCAGTGTATGGTAACCAATTATCTCTTGGC ATGCGGTTCAGAATGATGTTTGAAACTGAAGAGTCAGGAACAAGAAGGTACATGGGTACA ATAACTGGTATAAGTGATCTGGATCCAGTAAGGTGGAAAACATCTCATTGGCGCAATATT CAGGTTGCATGGGATGAAGCGGCACCAACTGAGAGACGCACCAGGGTTTCCCTCTGGGAG ATAGAGCCTATCATTGCTCCATTCTTCATCTACCCCTCACCATTATTCACCGCAAAACGT CCAAGGCTACCTGGGATGACAGATGACGAGACTGAAATGGACGGTCTTCTCAAGAGGGCC ATGCCATGGGTTGGTGAGGAGATTTGCAAGAAAGATCTGAATATTCAGAACAGTGTAGTG CCTGGTCTAAATCTAGCTCAGTGGATGAACATGCAGCACAGCTCCTCGCTTCCTGGCACG GTTGTGCAACCAGAGTTACTAAACTCATTAAGTGGAAAACCTGTACAAAATTTGGCTGCA GCTGATTTATCAAGGCAAATCAGTTTTCACCCGCAGTTCTTGCAACAAAACAACATCCAG TTCAACACTGCGTTGGTACCTCAACAAAACCAACAGACAGAACAATTAGCGAAAGTTATC CCTACACCAAACCAATTGGGAAGTGTTATAATACCGCAGAAGGTGGTTCAGGATTGCAAC TCTGAACAAAGGCAGCATGTGGTTACTCAACCAGTGCAAGGCAGCCAGCCAAACATAAAC ATTCCACAGCCTCAGCTTGTTGTTCAGGCTCAGCTTCAGCAACCGCAAGTCATTCTCCAG GCGCAACTGCAGCAACCTCAAGTTGTTGTCCAGGCCCAACTCCAGCAAACGCAACCTTCG GTCCAAAGTCACACTGTCTTACAAGGAGGTCTTCAACAAATCCAGCTTCTCCAGCAGCAA CAGCCACATGTGCAGCACCAGCAGATACCGCAACAGTTACATCATCAGCAGCAGCAAACA CAACAGTTGCAACCTGTCCAGCAGGTTCAGCAGTCAGTACAGGAACATCAGC

Peptide Sequence

PEP ID	Os08t0520550-01
PEP Infomation	pep chromosome:IRGSP-1.0:8:25873389:25877678:-1 gene:Os08g0520550 transcript:Os08t0520550-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Auxin response factor 21. (Os08t0520550-01)
Sequence	MASSGGGGGGGEEGEGRGATKVNQELWYACAGPLVSLPPQGSLIVYFPQGHSEQVAASMR KDADAQIPSYPNLPSKLICILHSVTMLADPDTDEVYARMTLQPVSNVTQCDKETLLASEL ALKQTRPQTEFFCKTLTASDTSTHGGFSVPRRAAERIFPRLDFSMQPPAQELQARDLHDN VWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDAKQQLLLGIRRANRQPTNL SSSVLSSDSMHIGILAAAAHAAANNSQFTIYYNPRASTSEFVIPFAKYQKAVYGNQLSLG MRFRMMFETEESGTRRYMGTITGISDLDPVRWKTSHWRNIQVAWDEAAPTERRTRVSLWE IEPIIAPFFIYPSPLFTAKRPRLPGMTDDETEMDGLLKRAMPWVGEEICKKDLNIQNSVV PGLNLAQWMNMQHSSSLPGTVVQPELLNSLSGKPVQNLAAADLSRQISFHPQFLQQNNIQ FNTALVPQQNQQTEQLAKVIPTPNQLGSVIIPQKVVQDCNSEQRQHVVTQPVQGSQPNIN IPQPQLVVQAQLQQPQVILQAQLQQPQVVVQAQLQQTQPSVQSHTVLQGGLQQIQLLQQQ QPHVQHQQIPQQLHHQQQQTQQLQPVQQVQQSVQEHQ

Transcript Sequence

Transcript ID	Os08t0520550-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:25873389:25877678:-1 gene:Os08g0520550 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Auxin response factor 21. (Os08t0520550-01)
Sequence	GCTGCTACCGAGTCTCTTCTGTTCTCTCCTCAAATTCGCCTCCTCCTCGCCGGCGGCGAT CCATCCGGCGATGGATTCCGGCGGGCGGTAGGCTGAGGCGGCGGTGACTGAGCTCGGGAG ACACGGCGGCGGCGATGGCGAGCTCCGGCGGAGGGGGTGGTGGTGGGGAGGAGGGGGAGG GCAGGGGGGCGACCAAGGTGAACCAGGAGCTGTGGTACGCGTGCGCGGGGCCGCTCGTCT CGCTGCCGCCGCAGGGGAGCCTCATCGTCTACTTCCCCCAGGGTCACAGCGAGCAGGTTG CAGCATCTATGCGAAAGGACGCAGATGCGCAAATTCCAAGCTATCCAAATCTTCCATCAA AGCTGATATGCATCCTCCACAGTGTCACCATGCTTGCTGATCCTGACACAGATGAGGTTT ATGCTCGAATGACTCTCCAGCCAGTTAGCAATGTGACCCAGTGTGACAAGGAGACATTGC TAGCATCAGAGCTTGCGCTGAAGCAAACCAGGCCACAAACAGAATTCTTTTGCAAAACAC TGACCGCCAGTGATACAAGCACTCATGGAGGTTTCTCTGTGCCACGCCGTGCCGCTGAGA GGATTTTTCCTCGTCTTGACTTCTCCATGCAGCCTCCTGCCCAGGAACTGCAGGCCCGGG ATTTGCATGATAATGTTTGGACATTTCGTCATATATACCGGGGTCAGCCTAAAAGGCATT TACTGACTACGGGCTGGAGCCTATTTGTCAGTGGAAAGAGATTACTTGCTGGTGATTCAG TCTTGTTTATTAGGGATGCAAAACAGCAGCTCCTCTTGGGGATCAGACGAGCAAATAGGC AACCTACGAACCTCTCATCATCTGTCTTATCTAGTGATAGTATGCATATTGGAATTCTTG CTGCAGCAGCCCATGCTGCAGCGAATAACAGCCAATTTACAATATATTATAACCCAAGGG CCAGTACTTCCGAATTTGTGATTCCTTTTGCCAAATACCAGAAGGCAGTGTATGGTAACC AATTATCTCTTGGCATGCGGTTCAGAATGATGTTTGAAACTGAAGAGTCAGGAACAAGAA GGTACATGGGTACAATAACTGGTATAAGTGATCTGGATCCAGTAAGGTGGAAAACATCTC ATTGGCGCAATATTCAGGTTGCATGGGATGAAGCGGCACCAACTGAGAGACGCACCAGGG TTTCCCTCTGGGAGATAGAGCCTATCATTGCTCCATTCTTCATCTACCCCTCACCATTAT TCACCGCAAAACGTCCAAGGCTACCTGGGATGACAGATGACGAGACTGAAATGGACGGTC TTCTCAAGAGGGCCATGCCATGGGTTGGTGAGGAGATTTGCAAGAAAGATCTGAATATTC AGAACAGTGTAGTGCCTGGTCTAAATCTAGCTCAGTGGATGAACATGCAGCACAGCTCCT CGCTTCCTGGCACGGTTGTGCAACCAGAGTTACTAAACTCATTAAGTGGAAAACCTGTAC AAAATTTGGCTGCAGCTGATTTATCAAGGCAAATCAGTTTTCACCCGCAGTTCTTGCAAC AAAACAACATCCAGTTCAACACTGCGTTGGTACCTCAACAAAACCAACAGACAGAACAAT TAGCGAAAGTTATCCCTACACCAAACCAATTGGGAAGTGTTATAATACCGCAGAAGGTGG TTCAGGATTGCAACTCTGAACAAAGGCAGCATGTGGTTACTCAACCAGTGCAAGGCAGCC AGCCAAACATAAACATTCCACAGCCTCAGCTTGTTGTTCAGGCTCAGCTTCAGCAACCGC AAGTCATTCTCCAGGCGCAACTGCAGCAACCTCAAGTTGTTGTCCAGGCCCAACTCCAGC AAACGCAACCTTCGGTCCAAAGTCACACTGTCTTACAAGGAGGTCTTCAACAAATCCAGC TTCTCCAGCAGCAACAGCCACATGTGCAGCACCAGCAGATACCGCAACAGTTACATCATC AGCAGCAGCAAACACAACAGTTGCAACCTGTCCAGCAGGTTCAGCAGTCAGTACAGGAAC ATCAGC