Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0511200-00
CDS Infomation

cds chromosome:IRGSP-1.0:8:25351576:25353815:-1 gene:Os08g0511200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CUP-SHAPED COTYLEDON 3 description:Similar to Nam-like protein 16. (Os08t0511200-00)
Sequence

ATGCATCATCACTCGGCCACCATGGGGGACGCGCTGTGGGAGATGCTGGGGGAGGAGATG
GCGGCGGCGGCGGCGGCGGCCGGCGAGCACGGGCTGCCGCCGGGGTTCAGGTTCCACCCC
ACCGACGAGGAGCTCGTCACCTTCTACCTCGCCGCCAAGGTGTTCAACGGCGCGTGCTGC
GGCGGCGTGGACATCGCGGAGGTGGACCTGAACCGGTGCGAGCCGTGGGAGCTGCCGGAG
GCGGCGAGGATGGGGGAGAAGGAGTGGTACTTCTTCAGCCTCCGCGACCGCAAGTACCCG
ACGGGGCTGCGCACCAACCGCGCCACCGGCGCCGGCTACTGGAAGGCCACCGGCAAGGAC
AGGGAGGTGGTCGCCGCCGCCGCCGCCGGCGGCGCGCTCATCGGCATGAAGAAGACGCTC
GTCTTCTACAAGGGCCGCGCCCCGCGCGGCGAGAAGACCAAGTGGGTCCTCCACGAGTAC
CGCCTCGACGGCGACTTCGCCGCCGCTCGCCGCTCCACCAAGGAGGAATGGGTGATCTGC
AGGATCTTTCACAAGGTAGGAGATCAGTACAGCAAGCTGATGATGATGAAGAGCCCAGCC
AGCTACTACCTCCCAGTGAGCCACCACCACCCCAGCAGCATCTTCCATGACCTTCCTCCG
GTCCCATTCCCAAACCCTAGCCTCGTCCCCTTCCACCATGATCTCCCCACAAGCTTCCAT
CCTCCATTGCTGCAGCACAGCCATGCGAACAGCAAGAACAGCAGCAGCAACAATGGCGGC
TTCGTCTTCCCCAATGAGCCAAACACCACAAACAGCAGCGATAACCACATTTCTTGCAAT
GGCGCCATGGCTGCTGCTGCTGCTGCTGCTTTTCCTTCCTTCAGCTGTGCTAGTACTGTC
ACTGGCAAGGGGGGCCCACCGGCGCAGCTCGGAGTCAACGCCGGTCAACAGGAGCCACCG
CCACCTACCTGGATGGACGCTTACCTGCAGCACAGTGGATTCATTTATGAGATGGGCCCA
CCTGCAGTGCCCAGGGGCGCATGA

Peptide Sequence

PEP ID

Os08t0511200-00
PEP Infomation

pep chromosome:IRGSP-1.0:8:25351576:25353815:-1 gene:Os08g0511200 transcript:Os08t0511200-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CUP-SHAPED COTYLEDON 3 description:Similar to Nam-like protein 16. (Os08t0511200-00)
Sequence

MHHHSATMGDALWEMLGEEMAAAAAAAGEHGLPPGFRFHPTDEELVTFYLAAKVFNGACC
GGVDIAEVDLNRCEPWELPEAARMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKD
REVVAAAAAGGALIGMKKTLVFYKGRAPRGEKTKWVLHEYRLDGDFAAARRSTKEEWVIC
RIFHKVGDQYSKLMMMKSPASYYLPVSHHHPSSIFHDLPPVPFPNPSLVPFHHDLPTSFH
PPLLQHSHANSKNSSSNNGGFVFPNEPNTTNSSDNHISCNGAMAAAAAAAFPSFSCASTV
TGKGGPPAQLGVNAGQQEPPPPTWMDAYLQHSGFIYEMGPPAVPRGA

Transcript Sequence

Transcript ID

Os08t0511200-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:25351576:25353815:-1 gene:Os08g0511200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CUP-SHAPED COTYLEDON 3 description:Similar to Nam-like protein 16. (Os08t0511200-00)
Sequence

AGTGATTGTGTGACAGTGTGAGAGGGACATCAGATTCAGAGATGCATCATCACTCGGCCA
CCATGGGGGACGCGCTGTGGGAGATGCTGGGGGAGGAGATGGCGGCGGCGGCGGCGGCGG
CCGGCGAGCACGGGCTGCCGCCGGGGTTCAGGTTCCACCCCACCGACGAGGAGCTCGTCA
CCTTCTACCTCGCCGCCAAGGTGTTCAACGGCGCGTGCTGCGGCGGCGTGGACATCGCGG
AGGTGGACCTGAACCGGTGCGAGCCGTGGGAGCTGCCGGAGGCGGCGAGGATGGGGGAGA
AGGAGTGGTACTTCTTCAGCCTCCGCGACCGCAAGTACCCGACGGGGCTGCGCACCAACC
GCGCCACCGGCGCCGGCTACTGGAAGGCCACCGGCAAGGACAGGGAGGTGGTCGCCGCCG
CCGCCGCCGGCGGCGCGCTCATCGGCATGAAGAAGACGCTCGTCTTCTACAAGGGCCGCG
CCCCGCGCGGCGAGAAGACCAAGTGGGTCCTCCACGAGTACCGCCTCGACGGCGACTTCG
CCGCCGCTCGCCGCTCCACCAAGGAGGAATGGGTGATCTGCAGGATCTTTCACAAGGTAG
GAGATCAGTACAGCAAGCTGATGATGATGAAGAGCCCAGCCAGCTACTACCTCCCAGTGA
GCCACCACCACCCCAGCAGCATCTTCCATGACCTTCCTCCGGTCCCATTCCCAAACCCTA
GCCTCGTCCCCTTCCACCATGATCTCCCCACAAGCTTCCATCCTCCATTGCTGCAGCACA
GCCATGCGAACAGCAAGAACAGCAGCAGCAACAATGGCGGCTTCGTCTTCCCCAATGAGC
CAAACACCACAAACAGCAGCGATAACCACATTTCTTGCAATGGCGCCATGGCTGCTGCTG
CTGCTGCTGCTTTTCCTTCCTTCAGCTGTGCTAGTACTGTCACTGGCAAGGGGGGCCCAC
CGGCGCAGCTCGGAGTCAACGCCGGTCAACAGGAGCCACCGCCACCTACCTGGATGGACG
CTTACCTGCAGCACAGTGGATTCATTTATGAGATGGGCCCACCTGCAGTGCCCAGGGGCG
CATGATCTGGGCCGTTGGTTTCTTTAGGGCTACGATCTGGATATCCTTTAGTTTGCAAGT
GTGGTATTTAGACAAGCACTTGTTTAGCTGCTTTGAAATTACTAGTGGTTGTTAATTAAT
TAGTCATCATTTGGTTATTTTCATGCACTCAGGTGTGTACCTAGCTTGCATGCATGAGCT
GCAAGCATTGGTGCACTGGGTTGAGTATTACTACTAGTAACTACTTGCTTAATTACTACT
AGTATTACTTTGTCTGTGAATCCATGCGTGCATGTATTCACATGCAATGTAATGGCTACA
TATATAATC