Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0511000-01
CDS Infomation	cds chromosome:IRGSP-1.0:8:25344705:25346336:1 gene:Os08g0511000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os08t0511000-01)
Sequence	ATGGCGGCGGCGCGCGCCGCCGCCGCCGTCGATGCCTACCAACACAACACCCTCATCCGC GCCGCCGCCGACCACCGCAGCCTCCTGCTCGCCTTCCGCGCCATGCTGCGGGAGGGCGTC GCGGCGGACCACTTCACCTTTCCCTTCGCCCTCAAGGCGCTCGCCCAGGCGCACCACCGC TCGCCGCCGCCGTGCGCCGCCGCAACCGCAACGGCAACCACAACGTTGGGGTGCCTCCAC GCGCAGATGGTCAAATCCGGCCACGGCGCCAACGTGTACGCGGCCTCCGCCCTCGTCCAC GCCTACGTCTCCCGCGCCGACGCCGCCTCCGCGCGCGCGGTGTTCGACGCCGCTCGCCAC CGGAACGTGGTCACCTGGACGGCGATGATCGCGGGGCACGCCGCGGCCGGGGAGGCACGG GAGGCGGTCGCGCTTTTCAGGGAGGCCGTGGCGCGCGGGCAGGAGGTCAATGGCATCACC GTGGCGCAGGTGATGGGGGCTTGCGCTCAGAGCCGCGACCTCGAGAGCGGGAGGTGGGTT CATGCGACGCTCCGACGCTGGGGCGTCGAGCCTATCTTGCTCGACGTCGCTCTTGCCACG GCGGTACTCCATATGTATGCAAGCTGTGGCGGTCTTGATGCTGCCTTCGAAGTGTTCGAT AAAATGCCTCGAAGAAATGAGGTGTCATGGAATGCAATGGCTGAGGTATGCAGTAGACAT GGAAGACAGGATAAGGTTCTGGAGGTGTTTCCGGGTATGCATTCTGTTGGAATGAAGCCT GATAAGGTGACATGGCTGAGCATACTCCGCGCCTGTACATCCAAGGGAGCTGCGGGCTTA GGCCAAGGCGTGCACGCCTACATGGAGAAGACGATTGGTCATAGACATGTCGCAGTTTGC ACATCGCTCATGGATATGTACTCAAAGATAGGCAATGCACGGAGTGCACTCCAGATATTT CAGTGTCTCAAAAGAAAGGATTTGATGGCATGGACAAGCATGATCATCGGCTTAGCTAAG CATGGCCATGGCAAGGATGCTGTGCAACTCTTCAACCAAATGCAGCATGGTGGTGTTGTT CCGGATCATGTTGCATTTGTAGGTGTTCTTACTGCTTGCAGCCATGCTGGGATGGTAGAC GAAGCAAGAAAATACTTTGACTCCATGTGGAATCATTATGGCATCAGGCCAACAATCAAA CATTATGGTTGTATGATTGATCTCTTCAGTCGTGCTGGTCGATTGGCAGAGGCTGAGGGA ATGATGCAAATGATGCCTATTCAACCCAGTGTCACCATGTGGGGAAGCATGATGAATGGT TGCAAGGTACATGGCAGGGCTGATATTGCTGAGAGGGTAGGAAGGCAGGTTGCTGAGCTT AATCCTCAGTTTGGCGCAATATATGTGATAATGTCCAATATATATGCGGAGATTGGTAGG TGGCATGCAGTGGAGCACACCAGGAGATTGATGTGGCAGACTGGATTGAAGAAAATTGTA GGCTCAAGTGGCACTGAAGTGCAAATGTTGTGCTCCTGA

Peptide Sequence

PEP ID	Os08t0511000-01
PEP Infomation	pep chromosome:IRGSP-1.0:8:25344705:25346336:1 gene:Os08g0511000 transcript:Os08t0511000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os08t0511000-01)
Sequence	MAAARAAAAVDAYQHNTLIRAAADHRSLLLAFRAMLREGVAADHFTFPFALKALAQAHHR SPPPCAAATATATTTLGCLHAQMVKSGHGANVYAASALVHAYVSRADAASARAVFDAARH RNVVTWTAMIAGHAAAGEAREAVALFREAVARGQEVNGITVAQVMGACAQSRDLESGRWV HATLRRWGVEPILLDVALATAVLHMYASCGGLDAAFEVFDKMPRRNEVSWNAMAEVCSRH GRQDKVLEVFPGMHSVGMKPDKVTWLSILRACTSKGAAGLGQGVHAYMEKTIGHRHVAVC TSLMDMYSKIGNARSALQIFQCLKRKDLMAWTSMIIGLAKHGHGKDAVQLFNQMQHGGVV PDHVAFVGVLTACSHAGMVDEARKYFDSMWNHYGIRPTIKHYGCMIDLFSRAGRLAEAEG MMQMMPIQPSVTMWGSMMNGCKVHGRADIAERVGRQVAELNPQFGAIYVIMSNIYAEIGR WHAVEHTRRLMWQTGLKKIVGSSGTEVQMLCS

Transcript Sequence

Transcript ID	Os08t0511000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:25344705:25346336:1 gene:Os08g0511000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os08t0511000-01)
Sequence	ATTGTCAATTTCAAACTCCAGAACTGGGTACCATGGCGGCGGCGCGCGCCGCCGCCGCCG TCGATGCCTACCAACACAACACCCTCATCCGCGCCGCCGCCGACCACCGCAGCCTCCTGC TCGCCTTCCGCGCCATGCTGCGGGAGGGCGTCGCGGCGGACCACTTCACCTTTCCCTTCG CCCTCAAGGCGCTCGCCCAGGCGCACCACCGCTCGCCGCCGCCGTGCGCCGCCGCAACCG CAACGGCAACCACAACGTTGGGGTGCCTCCACGCGCAGATGGTCAAATCCGGCCACGGCG CCAACGTGTACGCGGCCTCCGCCCTCGTCCACGCCTACGTCTCCCGCGCCGACGCCGCCT CCGCGCGCGCGGTGTTCGACGCCGCTCGCCACCGGAACGTGGTCACCTGGACGGCGATGA TCGCGGGGCACGCCGCGGCCGGGGAGGCACGGGAGGCGGTCGCGCTTTTCAGGGAGGCCG TGGCGCGCGGGCAGGAGGTCAATGGCATCACCGTGGCGCAGGTGATGGGGGCTTGCGCTC AGAGCCGCGACCTCGAGAGCGGGAGGTGGGTTCATGCGACGCTCCGACGCTGGGGCGTCG AGCCTATCTTGCTCGACGTCGCTCTTGCCACGGCGGTACTCCATATGTATGCAAGCTGTG GCGGTCTTGATGCTGCCTTCGAAGTGTTCGATAAAATGCCTCGAAGAAATGAGGTGTCAT GGAATGCAATGGCTGAGGTATGCAGTAGACATGGAAGACAGGATAAGGTTCTGGAGGTGT TTCCGGGTATGCATTCTGTTGGAATGAAGCCTGATAAGGTGACATGGCTGAGCATACTCC GCGCCTGTACATCCAAGGGAGCTGCGGGCTTAGGCCAAGGCGTGCACGCCTACATGGAGA AGACGATTGGTCATAGACATGTCGCAGTTTGCACATCGCTCATGGATATGTACTCAAAGA TAGGCAATGCACGGAGTGCACTCCAGATATTTCAGTGTCTCAAAAGAAAGGATTTGATGG CATGGACAAGCATGATCATCGGCTTAGCTAAGCATGGCCATGGCAAGGATGCTGTGCAAC TCTTCAACCAAATGCAGCATGGTGGTGTTGTTCCGGATCATGTTGCATTTGTAGGTGTTC TTACTGCTTGCAGCCATGCTGGGATGGTAGACGAAGCAAGAAAATACTTTGACTCCATGT GGAATCATTATGGCATCAGGCCAACAATCAAACATTATGGTTGTATGATTGATCTCTTCA GTCGTGCTGGTCGATTGGCAGAGGCTGAGGGAATGATGCAAATGATGCCTATTCAACCCA GTGTCACCATGTGGGGAAGCATGATGAATGGTTGCAAGGTACATGGCAGGGCTGATATTG CTGAGAGGGTAGGAAGGCAGGTTGCTGAGCTTAATCCTCAGTTTGGCGCAATATATGTGA TAATGTCCAATATATATGCGGAGATTGGTAGGTGGCATGCAGTGGAGCACACCAGGAGAT TGATGTGGCAGACTGGATTGAAGAAAATTGTAGGCTCAAGTGGCACTGAAGTGCAAATGT TGTGCTCCTGAATATAGTTTCCTCTAGCATCTGTCTATGGAACTTTTTGAAGTGAAAGGA GGAGAATTTGTT