Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0509100-01
CDS Infomation	cds chromosome:IRGSP-1.0:8:25241037:25250038:1 gene:Os08g0509100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LIPOXYGENASE 8 description:Similar to Lipoxygenase, chloroplast precursor (EC 1.13.11.12). (Os08t0509100-01);Similar to Lipoxygenase. (Os08t0509100-02)
Sequence	ATGCTGCGTCCCCAGCTCAATCCATCGTCCAGCCACCACCATACGACGACGACGAGCAGC AGCAGCAGCACGCAGCTGTACTTCGCCTCCTCGTCGTGCATCGCTAGCCTTCGCCGGCCG TCGCCGCCGTCGCTGATCGCCGGTGCCGGCTGCCGGACGACGCGGCGGAGACAGCAGGGT AGGCAGCGAGTTGTTGTGAGGTGCGCGTCCTCGTCGGCGGCATCATCGGCGTCGGAGGCG GCGAGAAGAGGGACCGGTAGTTCGGACATGGCGCCGGCGGCGGTGGTGAAGGTGAAGGCG GTGGCGACGATCAAGGTCACCGTCGAAGGGCTTCTCAACAGCCTGAGGCCGTCGAAGGCG ATCGACAACATCAGGGATCTCATCGGAAGGTCGCTCTTCCTCGAGCTCGTCAGCTCCGAG CTTGAAGCGAAGACAGGGAAGAAGAAGGCAACGGTGCATAGCTACGCGCACAAGGTGGAC GACGACGACCATGGCGTCGTCACCTACGAGGCCGACTTCGACGTGCCGACCGGCTTCGGC CCCATCGGCGCCGTCGTGGTCACCAACGAGCTCGGGCAGGAGATGTTCCTCGAGGACCTC AACCTCACCGCCGGCGATGGCGCCGGCAACTCCACCGTCCTCCCCATCCGCTGCAACTCC TGGGTCCAGCCCAAGTCCAGCATCGACGAGGGCACGCCTGGCAAGCGCATCTTCTTCGCC AAGGCTTATCTGCCGGGCCAAACTCCGGCGGGTCTCCGGAGCTACCGGGAGGAGGACCTC AAGCAGAAGCGCGGCAATGGCGCTGGCCAGAGGGAGGCCGACGACCGCGTCTACGACTAC GACGTGTACAACGACCTCGGCAACCCCGACAGCAACGGTGACCTCGCCCGCCCCGTCCTC GGCGGCAGCAAGCAGTTCCCTTACCCTCGCCGCTGCCGCACTGGTCGCCCCCCTTCCAAG AAAGACCCGAAGTCGGAGACGAGGAAGGGGAACGTGTACGTGCCGAGGGACGAGGAGTTC TCGGAGGTGAAGAACGCGCAGTTCTTGCTCAAGACGCTGCAGTCGGTGCTCCACGCCGCC GTGCCGGCGGCGCAGTCGGCGCTCATCGACAATCTGAGCCTGAACCTGCCGTTCCCGTCC TTCTTCGTCATCGACAAGCTGTTCGAGGACGGCGTCGAGCTTCCCGGCGTCGAGAAGCTC GGCTTCCTCCACAGCATCGTGCCCCGCCTGCTCGAGCTCCTCCGCGACAGCCCCGGCGAC AAGATCCTCCTCTTCGACACTCCGGCCAACGTCCAAAAGGACAAGTTCGCATGGCTCAGA GATGAGGAGTTCGCGAGGGAGACGCTCGCTGGCATCAACCCGTACGCCATCGAGCTCGTC AGGGAATTTCCGCTAAAGAGCAAGCTCGACCCGGCGGTGTACGGTCCGGCGGAGTCGGCG ATCACCGCCGATTTGCTGGAGGAGCAGATGAGGCGCGTGATGACGGTGGAGGAGGCGATC AGCCAGAAGAGGCTGTTCATGCTCGACTTCCATGACCTCTTCTTGCCGTACGTGCACAAG ATCCGGTCGCTGAAGCACACCACCATGTACGGCTCGCGCACCATCTTCTTCCTCACCGAC GACGGCACGCTGCGGCTGCTCGCCATCGAGCTCACCCGGCCGGCCTCGCCGTCGCAGCCG CAGTGGCGGCAGGTGTTCACCCCGTCCACGGACACCACCAAGTCGTGGCTGTGGCGGATG GCCAAGGCCCACGTCCGCGCCCACGACGCCGGCCACCACGAGCTCATCACCCACTGGCTT CGCACGCACTGCGCGGTGGAGCCGTACATCATCGCGGCGAACCGGCAGCTCAGCGAGATG CACCCCATCTACCAGCTGCTGCACCCGCACTTCCGGTACACGATGCGGATCAACGCGCTC GCGCGCTCCAGGCTGATCAGCGCCGCCGGCATCATCGAGCTCTCGTTTTCGCCGCAGAAG TACTCCATGGAGCTCAGCTCCGTCGCCTACGACAAGCTCTGGCGCTTCGACATGGAGGCG CTCCCCGCCGACCTCGTCCGCCGCGGCATGGCCGAGGAGGACCCCACGGCGGAGCACGGC CTCAGGCTCGCCATCGAGGACTACCCGTTCGCCAACGACGGCCTCCTCATCTGGGACGCC ATCAAGACCTGGGTCCAGGCGTACGTCGCGCGGTTCTACCCCGACGCCGACAGCGTCGCC GGCGACGAGGAGCTCCAGGCGTTCTGGACCGAGGTGCGCACCAAGGGGCACGGCGACAAG AAGGACGCCCCGTGGTGGCCGAAGTTGGACTCGCCGGAGAGCCTCGCCCACACGCTGACC ACCATCGTCTGGGTCGCGGCGGCGCACCACGCCGCCGTCAACTTCGGGCAGTACGACTTC GGCGGCTACTTCCCCAACCGGCCGTCCATCGCGCGCACGGTCATGCCGGTGGAGGAGCCC GTGGACGGCGCCGCCATGGAGAGGTTCCTGGACAACCCGGACCAGGCGCTCCGCGAGTGC TTCCCGTCGCAGGTGCAGGCAACGGTGGTGATGGCGGTGCTCGACGTGCTGTCCACCCAC TCCACCGACGAGGAGTACCTCGGCGGCGAGCAGACGAGGCCGTGGAACAGCGACGCGGCG GTGCAGGCGGCGTACGCTGGGTTCACAGCTCGGCTCAAGGAGATCGAGGGCGTCATCGAC GGCCGGAACAAGGACAGGAAGCTCAAGAATCGGTGCGGCGCCGGCATCCTGCCGTATCAG CTGATGAAGCCCTTCTCCGACGCCGGCGTCACCGGCATGGGCATCCCCAACAGCACATCC ATCTGA

Peptide Sequence

PEP ID	Os08t0509100-01
PEP Infomation	pep chromosome:IRGSP-1.0:8:25241037:25250038:1 gene:Os08g0509100 transcript:Os08t0509100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LIPOXYGENASE 8 description:Similar to Lipoxygenase, chloroplast precursor (EC 1.13.11.12). (Os08t0509100-01);Similar to Lipoxygenase. (Os08t0509100-02)
Sequence	MLRPQLNPSSSHHHTTTTSSSSSTQLYFASSSCIASLRRPSPPSLIAGAGCRTTRRRQQG RQRVVVRCASSSAASSASEAARRGTGSSDMAPAAVVKVKAVATIKVTVEGLLNSLRPSKA IDNIRDLIGRSLFLELVSSELEAKTGKKKATVHSYAHKVDDDDHGVVTYEADFDVPTGFG PIGAVVVTNELGQEMFLEDLNLTAGDGAGNSTVLPIRCNSWVQPKSSIDEGTPGKRIFFA KAYLPGQTPAGLRSYREEDLKQKRGNGAGQREADDRVYDYDVYNDLGNPDSNGDLARPVL GGSKQFPYPRRCRTGRPPSKKDPKSETRKGNVYVPRDEEFSEVKNAQFLLKTLQSVLHAA VPAAQSALIDNLSLNLPFPSFFVIDKLFEDGVELPGVEKLGFLHSIVPRLLELLRDSPGD KILLFDTPANVQKDKFAWLRDEEFARETLAGINPYAIELVREFPLKSKLDPAVYGPAESA ITADLLEEQMRRVMTVEEAISQKRLFMLDFHDLFLPYVHKIRSLKHTTMYGSRTIFFLTD DGTLRLLAIELTRPASPSQPQWRQVFTPSTDTTKSWLWRMAKAHVRAHDAGHHELITHWL RTHCAVEPYIIAANRQLSEMHPIYQLLHPHFRYTMRINALARSRLISAAGIIELSFSPQK YSMELSSVAYDKLWRFDMEALPADLVRRGMAEEDPTAEHGLRLAIEDYPFANDGLLIWDA IKTWVQAYVARFYPDADSVAGDEELQAFWTEVRTKGHGDKKDAPWWPKLDSPESLAHTLT TIVWVAAAHHAAVNFGQYDFGGYFPNRPSIARTVMPVEEPVDGAAMERFLDNPDQALREC FPSQVQATVVMAVLDVLSTHSTDEEYLGGEQTRPWNSDAAVQAAYAGFTARLKEIEGVID GRNKDRKLKNRCGAGILPYQLMKPFSDAGVTGMGIPNSTSI

Transcript Sequence

Transcript ID	Os08t0509100-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:25241037:25250038:1 gene:Os08g0509100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LIPOXYGENASE 8 description:Similar to Lipoxygenase, chloroplast precursor (EC 1.13.11.12). (Os08t0509100-01);Similar to Lipoxygenase. (Os08t0509100-02)
Sequence	GGCTGCCTCACCTTACCTCGATCTGCAAGCAAGCCAAGCCAAGCATAGGTAGACGACGTG TAGATACGTAGTCCTCCTCCTCTCTCTCGATTCTGCACGCCTCGTCGAGCAGCTAGCTAG CATATATACCCCCATACCTGCATACCATGCTGCGTCCCCAGCTCAATCCATCGTCCAGCC ACCACCATACGACGACGACGAGCAGCAGCAGCAGCACGCAGCTGTACTTCGCCTCCTCGT CGTGCATCGCTAGCCTTCGCCGGCCGTCGCCGCCGTCGCTGATCGCCGGTGCCGGCTGCC GGACGACGCGGCGGAGACAGCAGGGTAGGCAGCGAGTTGTTGTGAGGTGCGCGTCCTCGT CGGCGGCATCATCGGCGTCGGAGGCGGCGAGAAGAGGGACCGGTAGTTCGGACATGGCGC CGGCGGCGGTGGTGAAGGTGAAGGCGGTGGCGACGATCAAGGTCACCGTCGAAGGGCTTC TCAACAGCCTGAGGCCGTCGAAGGCGATCGACAACATCAGGGATCTCATCGGAAGGTCGC TCTTCCTCGAGCTCGTCAGCTCCGAGCTTGAAGCGAAGACAGGGAAGAAGAAGGCAACGG TGCATAGCTACGCGCACAAGGTGGACGACGACGACCATGGCGTCGTCACCTACGAGGCCG ACTTCGACGTGCCGACCGGCTTCGGCCCCATCGGCGCCGTCGTGGTCACCAACGAGCTCG GGCAGGAGATGTTCCTCGAGGACCTCAACCTCACCGCCGGCGATGGCGCCGGCAACTCCA CCGTCCTCCCCATCCGCTGCAACTCCTGGGTCCAGCCCAAGTCCAGCATCGACGAGGGCA CGCCTGGCAAGCGCATCTTCTTCGCCAAGGCTTATCTGCCGGGCCAAACTCCGGCGGGTC TCCGGAGCTACCGGGAGGAGGACCTCAAGCAGAAGCGCGGCAATGGCGCTGGCCAGAGGG AGGCCGACGACCGCGTCTACGACTACGACGTGTACAACGACCTCGGCAACCCCGACAGCA ACGGTGACCTCGCCCGCCCCGTCCTCGGCGGCAGCAAGCAGTTCCCTTACCCTCGCCGCT GCCGCACTGGTCGCCCCCCTTCCAAGAAAGACCCGAAGTCGGAGACGAGGAAGGGGAACG TGTACGTGCCGAGGGACGAGGAGTTCTCGGAGGTGAAGAACGCGCAGTTCTTGCTCAAGA CGCTGCAGTCGGTGCTCCACGCCGCCGTGCCGGCGGCGCAGTCGGCGCTCATCGACAATC TGAGCCTGAACCTGCCGTTCCCGTCCTTCTTCGTCATCGACAAGCTGTTCGAGGACGGCG TCGAGCTTCCCGGCGTCGAGAAGCTCGGCTTCCTCCACAGCATCGTGCCCCGCCTGCTCG AGCTCCTCCGCGACAGCCCCGGCGACAAGATCCTCCTCTTCGACACTCCGGCCAACGTCC AAAAGGACAAGTTCGCATGGCTCAGAGATGAGGAGTTCGCGAGGGAGACGCTCGCTGGCA TCAACCCGTACGCCATCGAGCTCGTCAGGGAATTTCCGCTAAAGAGCAAGCTCGACCCGG CGGTGTACGGTCCGGCGGAGTCGGCGATCACCGCCGATTTGCTGGAGGAGCAGATGAGGC GCGTGATGACGGTGGAGGAGGCGATCAGCCAGAAGAGGCTGTTCATGCTCGACTTCCATG ACCTCTTCTTGCCGTACGTGCACAAGATCCGGTCGCTGAAGCACACCACCATGTACGGCT CGCGCACCATCTTCTTCCTCACCGACGACGGCACGCTGCGGCTGCTCGCCATCGAGCTCA CCCGGCCGGCCTCGCCGTCGCAGCCGCAGTGGCGGCAGGTGTTCACCCCGTCCACGGACA CCACCAAGTCGTGGCTGTGGCGGATGGCCAAGGCCCACGTCCGCGCCCACGACGCCGGCC ACCACGAGCTCATCACCCACTGGCTTCGCACGCACTGCGCGGTGGAGCCGTACATCATCG CGGCGAACCGGCAGCTCAGCGAGATGCACCCCATCTACCAGCTGCTGCACCCGCACTTCC GGTACACGATGCGGATCAACGCGCTCGCGCGCTCCAGGCTGATCAGCGCCGCCGGCATCA TCGAGCTCTCGTTTTCGCCGCAGAAGTACTCCATGGAGCTCAGCTCCGTCGCCTACGACA AGCTCTGGCGCTTCGACATGGAGGCGCTCCCCGCCGACCTCGTCCGCCGCGGCATGGCCG AGGAGGACCCCACGGCGGAGCACGGCCTCAGGCTCGCCATCGAGGACTACCCGTTCGCCA ACGACGGCCTCCTCATCTGGGACGCCATCAAGACCTGGGTCCAGGCGTACGTCGCGCGGT TCTACCCCGACGCCGACAGCGTCGCCGGCGACGAGGAGCTCCAGGCGTTCTGGACCGAGG TGCGCACCAAGGGGCACGGCGACAAGAAGGACGCCCCGTGGTGGCCGAAGTTGGACTCGC CGGAGAGCCTCGCCCACACGCTGACCACCATCGTCTGGGTCGCGGCGGCGCACCACGCCG CCGTCAACTTCGGGCAGTACGACTTCGGCGGCTACTTCCCCAACCGGCCGTCCATCGCGC GCACGGTCATGCCGGTGGAGGAGCCCGTGGACGGCGCCGCCATGGAGAGGTTCCTGGACA ACCCGGACCAGGCGCTCCGCGAGTGCTTCCCGTCGCAGGTGCAGGCAACGGTGGTGATGG CGGTGCTCGACGTGCTGTCCACCCACTCCACCGACGAGGAGTACCTCGGCGGCGAGCAGA CGAGGCCGTGGAACAGCGACGCGGCGGTGCAGGCGGCGTACGCTGGGTTCACAGCTCGGC TCAAGGAGATCGAGGGCGTCATCGACGGCCGGAACAAGGACAGGAAGCTCAAGAATCGGT GCGGCGCCGGCATCCTGCCGTATCAGCTGATGAAGCCCTTCTCCGACGCCGGCGTCACCG GCATGGGCATCCCCAACAGCACATCCATCTGATGGGAGGACATCTACTTGCAATTGATCG TTCATGTCATCATGTGTGTGAAGCTCTGAATTATTTGTGTCAGTAGTAGCATTGTTACAT AATTTTTAATCTGCATATATTTGTCTGTAAAAATAAGAAGTGGTTGTTGTTGATGTTATT TATTGAAAATCTTATGAATAATGTATTCTTTTATTTGATTTATTTGCAGAAACAATTGAT AGCATTTACATTG