Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0506500-00
CDS Infomation

cds chromosome:IRGSP-1.0:8:25064640:25066853:-1 gene:Os08g0506500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to tRNA/rRNA methyltransferase (SpoU) family protein. (Os08t0506500-00)
Sequence

ATGGAGGCCGCCGGCTTACGGCTGCGCGCCCTCGGCCTGTGCCGCGGCAACCGGGGAGCG
TTCCCCGCCGCGCATGGCGGCGGCGGCGGCCGGCTCCACCCCCGCCGCCCGCGCCTCGCG
GGCGCCTTCTGCTCCCGTGCGTGGCTGAACCGACCCGTACGCCCCCGCCGTTCCTCCCGT
CTCACGTTTCCTCCTCTCGTGTTTGTGTTTGCAGTTGCTACGACCGGCAACGGAGCCGCC
GCCGCCGTTGGACCCGTCGGGAGCGGCGCCGAGGTCGCGCGCGCCAAGAGGATGCTTCAC
GTGGTGCTGGTCTCCCCTCTGATCCCGGGAAACACTGGATCGATTGCGAGGACATGTGCT
GCGTCAGCAGTTGGGCTGCATCTTGTCGGGGTAAGATATGTTGTTGTCAAGATTCATGAC
TCCTGGAACGAGTTCCGAGATTATTTCATGAAGCAGGATTTCTCATATAAGCCTGGGGAT
TGGTTAGTATTTGGCTCTGAGACGAAAGGTTTACCACAATCTGCCCTTGAGGACTGCTCT
AGAGAAGGCCTAGGTGGTGGAACTATACGAATTCCAATGGTGGAAACCTATGTCCGGTGC
CTAAATCTTTCTGTTAGCGTCGGAGTAGCACTGTACGAGGCAGCTAGACAACTCAACTAT
GAACAGCTCCATTATCAGCCGGAGCTCCCGGAAGAAGCGCAAGGACTATTCCCTGCCGAG
GACATTTATGCATGA

Peptide Sequence

PEP ID

Os08t0506500-00
PEP Infomation

pep chromosome:IRGSP-1.0:8:25064640:25066853:-1 gene:Os08g0506500 transcript:Os08t0506500-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to tRNA/rRNA methyltransferase (SpoU) family protein. (Os08t0506500-00)
Sequence

MEAAGLRLRALGLCRGNRGAFPAAHGGGGGRLHPRRPRLAGAFCSRAWLNRPVRPRRSSR
LTFPPLVFVFAVATTGNGAAAAVGPVGSGAEVARAKRMLHVVLVSPLIPGNTGSIARTCA
ASAVGLHLVGVRYVVVKIHDSWNEFRDYFMKQDFSYKPGDWLVFGSETKGLPQSALEDCS
REGLGGGTIRIPMVETYVRCLNLSVSVGVALYEAARQLNYEQLHYQPELPEEAQGLFPAE
DIYA

Transcript Sequence

Transcript ID

Os08t0506500-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:25064640:25066853:-1 gene:Os08g0506500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to tRNA/rRNA methyltransferase (SpoU) family protein. (Os08t0506500-00)
Sequence

ATGGAGGCCGCCGGCTTACGGCTGCGCGCCCTCGGCCTGTGCCGCGGCAACCGGGGAGCG
TTCCCCGCCGCGCATGGCGGCGGCGGCGGCCGGCTCCACCCCCGCCGCCCGCGCCTCGCG
GGCGCCTTCTGCTCCCGTGCGTGGCTGAACCGACCCGTACGCCCCCGCCGTTCCTCCCGT
CTCACGTTTCCTCCTCTCGTGTTTGTGTTTGCAGTTGCTACGACCGGCAACGGAGCCGCC
GCCGCCGTTGGACCCGTCGGGAGCGGCGCCGAGGTCGCGCGCGCCAAGAGGATGCTTCAC
GTGGTGCTGGTCTCCCCTCTGATCCCGGGAAACACTGGATCGATTGCGAGGACATGTGCT
GCGTCAGCAGTTGGGCTGCATCTTGTCGGGGTAAGATATGTTGTTGTCAAGATTCATGAC
TCCTGGAACGAGTTCCGAGATTATTTCATGAAGCAGGATTTCTCATATAAGCCTGGGGAT
TGGTTAGTATTTGGCTCTGAGACGAAAGGTTTACCACAATCTGCCCTTGAGGACTGCTCT
AGAGAAGGCCTAGGTGGTGGAACTATACGAATTCCAATGGTGGAAACCTATGTCCGGTGC
CTAAATCTTTCTGTTAGCGTCGGAGTAGCACTGTACGAGGCAGCTAGACAACTCAACTAT
GAACAGCTCCATTATCAGCCGGAGCTCCCGGAAGAAGCGCAAGGACTATTCCCTGCCGAG
GACATTTATGCATGA