Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0505900-01
CDS Infomation	cds chromosome:IRGSP-1.0:8:25015802:25017363:-1 gene:Os08g0505900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:POLYGALACTURONASE-INHIBITING PROTEIN 6 description:Leucine-rich repeat (LRR) protein, Inhibitor of fungal polygalacturonase, Defence response (Os08t0505900-01)
Sequence	ATGGCATCATCTCCCGCTCCAAGCCCCGCCGCGCCGCCGCTCCTCCTCGCCGCGCTCGCG GCGCTCGCCGTGGTCGCGTCCGCCTCCGCCGCCGCGTGCTCCGCGGGCGACCGGGACGCG CTGCTGGCGATCCGGGCGGCGCTGTCGGAGGCGCACCTCGGGGTGTTCTCGTCGTGGACG GGCACCGACTGCTGCACCAGCTGGTACGGCGTGAGCTGCGATCCCACCACCGGCCGCGTC GCCGACCTCACCCTCCGCGGCGAGGCCGACGACCCCGTCATGGCGCCCGCCGGCCGCCCG GCCTCCGGCGTCATGTCCGGCTACATCTCCGACGCGGTGTGCCGCCTCGGCCGCCTCTCC TCCCTCATCCTCGCCGACTGGAAGCAGATCTCCGGGCCCATCCCGCCGTGCGTCGCCACC GCCCTCCCTTACCTCCGCATCCTCGAGCTCCCCGGCAACCGCCTCACCGGCGAGATCCCG CGCTCCATCGGCAGCCTCTCCCGCCTCACCGTGCTCAACCTCGCCGACAACCTCATCGCC GGCGAAATCCCAAGCTCCATCACCTCGCTCGCGTCGCTGAAGCACCTCGACCTCACCAAC AACCAGCTCACCGGCGGGATCCCGGACGACGTGGGCGACCTCACCATGCTCAGCCGCGCG CTGCTCGGCCGGAACAAGCTCACCGGCGCCATCCCAACGTCGGTCGGCTCCCTGACCCGG CTCGCCGACCTCGACCTCGCCGAGAACGGCCTCACCGGCGGGATCCCGGACAGCCTGGGC GGCGCCCACGTGCTCACCTCCCTGTACCTCGGCGGCAACCGGGTCTCCGGCCGGATCCCG GCGAGCCTGCTGCAGAACAAGGGGCTGGGCATCCTGAACCTGAGCCGGAACGCCGTCGAG GGCGCCATCCCCGACGTGTTCACCGCCGAGTCCTACTTCATGGTGCTCGACCTGTCCCGG AACAGGCTCACCGGCGCCGTGCCGAGGTCGCTGTCGGCGGCAGCGTACGTCGGCCACCTC GACCTCAGCCACAACCGGCTGTGCGGCTCCATCCCCGCCGGCCCGCCGTTCGACCACCTC GACGCCGCCTCCTTCGCCAGCAACAGCTGCCTCTGCGGCGGCCCGCTCGGCAAGTGCACG TGA

Peptide Sequence

PEP ID	Os08t0505900-01
PEP Infomation	pep chromosome:IRGSP-1.0:8:25015802:25017363:-1 gene:Os08g0505900 transcript:Os08t0505900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:POLYGALACTURONASE-INHIBITING PROTEIN 6 description:Leucine-rich repeat (LRR) protein, Inhibitor of fungal polygalacturonase, Defence response (Os08t0505900-01)
Sequence	MASSPAPSPAAPPLLLAALAALAVVASASAAACSAGDRDALLAIRAALSEAHLGVFSSWT GTDCCTSWYGVSCDPTTGRVADLTLRGEADDPVMAPAGRPASGVMSGYISDAVCRLGRLS SLILADWKQISGPIPPCVATALPYLRILELPGNRLTGEIPRSIGSLSRLTVLNLADNLIA GEIPSSITSLASLKHLDLTNNQLTGGIPDDVGDLTMLSRALLGRNKLTGAIPTSVGSLTR LADLDLAENGLTGGIPDSLGGAHVLTSLYLGGNRVSGRIPASLLQNKGLGILNLSRNAVE GAIPDVFTAESYFMVLDLSRNRLTGAVPRSLSAAAYVGHLDLSHNRLCGSIPAGPPFDHL DAASFASNSCLCGGPLGKCT

Transcript Sequence

Transcript ID	Os08t0505900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:25015802:25017363:-1 gene:Os08g0505900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:POLYGALACTURONASE-INHIBITING PROTEIN 6 description:Leucine-rich repeat (LRR) protein, Inhibitor of fungal polygalacturonase, Defence response (Os08t0505900-01)
Sequence	ACTCTCACTCTGCAGTGCAGTGCCCACGCGAGCCGAGACGAGACGATGGCATCATCTCCC GCTCCAAGCCCCGCCGCGCCGCCGCTCCTCCTCGCCGCGCTCGCGGCGCTCGCCGTGGTC GCGTCCGCCTCCGCCGCCGCGTGCTCCGCGGGCGACCGGGACGCGCTGCTGGCGATCCGG GCGGCGCTGTCGGAGGCGCACCTCGGGGTGTTCTCGTCGTGGACGGGCACCGACTGCTGC ACCAGCTGGTACGGCGTGAGCTGCGATCCCACCACCGGCCGCGTCGCCGACCTCACCCTC CGCGGCGAGGCCGACGACCCCGTCATGGCGCCCGCCGGCCGCCCGGCCTCCGGCGTCATG TCCGGCTACATCTCCGACGCGGTGTGCCGCCTCGGCCGCCTCTCCTCCCTCATCCTCGCC GACTGGAAGCAGATCTCCGGGCCCATCCCGCCGTGCGTCGCCACCGCCCTCCCTTACCTC CGCATCCTCGAGCTCCCCGGCAACCGCCTCACCGGCGAGATCCCGCGCTCCATCGGCAGC CTCTCCCGCCTCACCGTGCTCAACCTCGCCGACAACCTCATCGCCGGCGAAATCCCAAGC TCCATCACCTCGCTCGCGTCGCTGAAGCACCTCGACCTCACCAACAACCAGCTCACCGGC GGGATCCCGGACGACGTGGGCGACCTCACCATGCTCAGCCGCGCGCTGCTCGGCCGGAAC AAGCTCACCGGCGCCATCCCAACGTCGGTCGGCTCCCTGACCCGGCTCGCCGACCTCGAC CTCGCCGAGAACGGCCTCACCGGCGGGATCCCGGACAGCCTGGGCGGCGCCCACGTGCTC ACCTCCCTGTACCTCGGCGGCAACCGGGTCTCCGGCCGGATCCCGGCGAGCCTGCTGCAG AACAAGGGGCTGGGCATCCTGAACCTGAGCCGGAACGCCGTCGAGGGCGCCATCCCCGAC GTGTTCACCGCCGAGTCCTACTTCATGGTGCTCGACCTGTCCCGGAACAGGCTCACCGGC GCCGTGCCGAGGTCGCTGTCGGCGGCAGCGTACGTCGGCCACCTCGACCTCAGCCACAAC CGGCTGTGCGGCTCCATCCCCGCCGGCCCGCCGTTCGACCACCTCGACGCCGCCTCCTTC GCCAGCAACAGCTGCCTCTGCGGCGGCCCGCTCGGCAAGTGCACGTGACGTGCCCCAACC AGAGCCGTCCGATCGATCGGGAGAGCCTGATCGAACGTGTGGTGTGCGATGTACCGTGTA CGATGCAACGAACTTACGTGTTCGTATATATGGTTAATTAGTTGCTGCTTAAGTATTAAC TCACTTGGGCTATAGTTTTGGGCTTGGGTACATATAGAACAAGATGAGAATTTGTGCCTA GTGTGTGTGTGTGTGAGAGAAAGAGGAAGTGGTTAAGGAAAAGAAGAATGTTTTCTCTTT CCTGCCTTTCTCTTCTTTATACTTTTAACCTTTTTTGCTAGTGATTTACTTGATAGTTCT ACTTTAAAGTTTGTATTGTACAAGTGACAAAAGCATAAGAAATGCTAAAGATCTTGTATG AG