Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0500500-01
CDS Infomation

cds chromosome:IRGSP-1.0:8:24712558:24715643:1 gene:Os08g0500500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os08t0500500-01)
Sequence

ATGGGCATTGTGAAGGTAGCAAGTTGTGCGCCTACAGAAGAGCGGGCTTACAGCTGTGGA
GACGAGGACATTACACAAGAGGAGAAAATGCTGCTTCAGAGATTTCCTATTCATGAATCC
GATGACTATGAACATGAAGAGGTCAATTGTGAGCTTGCAAAGTCTGGAGATCAGATCTGT
AGTGTCCCTTATGGGCTTTATGATTTGCCTGAATTGAATGATATTCTTTCTTTGGAGACA
TGGAACTTATGTCTAACAGAAGATGATAGATTCCGTCTAGCAGCCTATCTCCCAGACATG
GACCAACATGATTTCTTTGTAACAATGAAGGAGCTGTTTAGTGGCAGTGACCTGTTCTTT
GGGAGTCCAGTGAAGAGCTTCTTCCACAGATTGAATGGTGGGTTTTATTCTCCAGAAGTT
TCCCAGGCTAGAGAATTACTGATGATCTTTGAAAGACGAAGATATTATCATTTTCTGAAG
TCCCATCATGATGGCATGATTTTCAAGTTTGCATCCATGGACAAGGTAGGAGGACGATGT
GGGGCGAGTACTGGTCTTCAGGGTAAGGTTAACAGTTGGAATGACAGAAGACATGAAGAT
CCCCTCACAGGTGTTGACATAAGCGGTTCTCCTTTCAATAGAAGTCTATCAATTGCCAAT
GAGGTTAAAGATGCAACCCTTCCACCTTTGAAGCGAACCAAACGTATGGATGGGACAGTA
ACCACTCATTGTTCAGCCAAGCGCAAGGGAATAGTCTACAGAGACAAATCAATGGAAATG
AGCTCATTGAAGAGTCCTGTCTTTCATGTTCCTGGTGAGCTTACTACATGTATTAGATTG
CCCAAAGGTGTGCTGAAAATAAAGACCGATTGTGCTTCCCTCATTGATCACAATGAAGGA
ATTCATCGTACACCAGAACCGATGCTAGCAGACCAACTGGGAATACAGGTCTCCAGCTTA
CCTTGCGCTTCTGCACTGGATGTTCATGGTTTTGCGATGAATTCAGCTTATTACTACCAC
ATAAACACAAGCAAGAGTACTTTGAGAAATCTACATGTGCGTCCCTACCAAAGAGAAGGC
ACACTTGATACTTACCCTCACTCAGTTGAAAGTCCGTTTGGAGTGCAAATTATGGTTCCA
GAGGAGCTTAAAAGGGGTTACTATTCTCGAATGCCGAATTCCTTCCATCAGTCAACAACC
AAACATAGTCCGGAATATTGCAATGAAGCACCCCACGAGAAGAACCTTTTGAAGAACTTT
GGTCAACAAAATGCCGTAATTCCTGAAAGTTCTCCTGATCCATTTACAAGGAATACTGAT
TGTCATCAAACAAATGGATACATGACGCATGGTCTGAAAACTGCTGAAAGTATTTCTGAG
GTGTTGACCCTTGGTACAGACACCGCTGGCCCTTACAAACACCTATTGGAGCAGTCTGAA
ACAATGCGTTACCCAGAAGGATTGAAGCTGAAGACTCCTGCCAGCCAGTCAGTTACAGAA
GTTGAAGAAGGTCATAGGTACCCTTTCACATACAAAAGGAGGAAGCTGCAGAAGAGGCTT
GACCTTGTTGATCCTGTCAAGAAATCAACTATGGTGGATTCAGAGCCTCTGAGCGCACTG
GCTAGCGTGGCAAATGTAAAAATCAAAGGCAATCAAGCTTTGAAGATTGGCAGCTGA

Peptide Sequence

PEP ID

Os08t0500500-01
PEP Infomation

pep chromosome:IRGSP-1.0:8:24712558:24715643:1 gene:Os08g0500500 transcript:Os08t0500500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os08t0500500-01)
Sequence

MGIVKVASCAPTEERAYSCGDEDITQEEKMLLQRFPIHESDDYEHEEVNCELAKSGDQIC
SVPYGLYDLPELNDILSLETWNLCLTEDDRFRLAAYLPDMDQHDFFVTMKELFSGSDLFF
GSPVKSFFHRLNGGFYSPEVSQARELLMIFERRRYYHFLKSHHDGMIFKFASMDKVGGRC
GASTGLQGKVNSWNDRRHEDPLTGVDISGSPFNRSLSIANEVKDATLPPLKRTKRMDGTV
TTHCSAKRKGIVYRDKSMEMSSLKSPVFHVPGELTTCIRLPKGVLKIKTDCASLIDHNEG
IHRTPEPMLADQLGIQVSSLPCASALDVHGFAMNSAYYYHINTSKSTLRNLHVRPYQREG
TLDTYPHSVESPFGVQIMVPEELKRGYYSRMPNSFHQSTTKHSPEYCNEAPHEKNLLKNF
GQQNAVIPESSPDPFTRNTDCHQTNGYMTHGLKTAESISEVLTLGTDTAGPYKHLLEQSE
TMRYPEGLKLKTPASQSVTEVEEGHRYPFTYKRRKLQKRLDLVDPVKKSTMVDSEPLSAL
ASVANVKIKGNQALKIGS

Transcript Sequence

Transcript ID

Os08t0500500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:24712558:24715643:1 gene:Os08g0500500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os08t0500500-01)
Sequence

GCGGCGCCACAGTAGCAGTAGCCACCACGCACGCACGCGTCGGTGCGTGTTCCCCCCCCC
CCCCCCTCCCCCCCGCGACAAATTCCTCCTCGCCTTTCCCCTCCTCCTCCCTCTCCTCGC
CGCCGATCCGCCGCCGCCGCCGCAGCCGGGATCTTCCGTCGGATAGTATGGTATTGTGCT
GGACACACTGTTGACTTTCGTCTCTATGATTATCTCTGATACCGATCGGAGCATTGCACC
TCTTCCTTCGATCAATGGGCATTGTGAAGGTAGCAAGTTGTGCGCCTACAGAAGAGCGGG
CTTACAGCTGTGGAGACGAGGACATTACACAAGAGGAGAAAATGCTGCTTCAGAGATTTC
CTATTCATGAATCCGATGACTATGAACATGAAGAGGTCAATTGTGAGCTTGCAAAGTCTG
GAGATCAGATCTGTAGTGTCCCTTATGGGCTTTATGATTTGCCTGAATTGAATGATATTC
TTTCTTTGGAGACATGGAACTTATGTCTAACAGAAGATGATAGATTCCGTCTAGCAGCCT
ATCTCCCAGACATGGACCAACATGATTTCTTTGTAACAATGAAGGAGCTGTTTAGTGGCA
GTGACCTGTTCTTTGGGAGTCCAGTGAAGAGCTTCTTCCACAGATTGAATGGTGGGTTTT
ATTCTCCAGAAGTTTCCCAGGCTAGAGAATTACTGATGATCTTTGAAAGACGAAGATATT
ATCATTTTCTGAAGTCCCATCATGATGGCATGATTTTCAAGTTTGCATCCATGGACAAGG
TAGGAGGACGATGTGGGGCGAGTACTGGTCTTCAGGGTAAGGTTAACAGTTGGAATGACA
GAAGACATGAAGATCCCCTCACAGGTGTTGACATAAGCGGTTCTCCTTTCAATAGAAGTC
TATCAATTGCCAATGAGGTTAAAGATGCAACCCTTCCACCTTTGAAGCGAACCAAACGTA
TGGATGGGACAGTAACCACTCATTGTTCAGCCAAGCGCAAGGGAATAGTCTACAGAGACA
AATCAATGGAAATGAGCTCATTGAAGAGTCCTGTCTTTCATGTTCCTGGTGAGCTTACTA
CATGTATTAGATTGCCCAAAGGTGTGCTGAAAATAAAGACCGATTGTGCTTCCCTCATTG
ATCACAATGAAGGAATTCATCGTACACCAGAACCGATGCTAGCAGACCAACTGGGAATAC
AGGTCTCCAGCTTACCTTGCGCTTCTGCACTGGATGTTCATGGTTTTGCGATGAATTCAG
CTTATTACTACCACATAAACACAAGCAAGAGTACTTTGAGAAATCTACATGTGCGTCCCT
ACCAAAGAGAAGGCACACTTGATACTTACCCTCACTCAGTTGAAAGTCCGTTTGGAGTGC
AAATTATGGTTCCAGAGGAGCTTAAAAGGGGTTACTATTCTCGAATGCCGAATTCCTTCC
ATCAGTCAACAACCAAACATAGTCCGGAATATTGCAATGAAGCACCCCACGAGAAGAACC
TTTTGAAGAACTTTGGTCAACAAAATGCCGTAATTCCTGAAAGTTCTCCTGATCCATTTA
CAAGGAATACTGATTGTCATCAAACAAATGGATACATGACGCATGGTCTGAAAACTGCTG
AAAGTATTTCTGAGGTGTTGACCCTTGGTACAGACACCGCTGGCCCTTACAAACACCTAT
TGGAGCAGTCTGAAACAATGCGTTACCCAGAAGGATTGAAGCTGAAGACTCCTGCCAGCC
AGTCAGTTACAGAAGTTGAAGAAGGTCATAGGTACCCTTTCACATACAAAAGGAGGAAGC
TGCAGAAGAGGCTTGACCTTGTTGATCCTGTCAAGAAATCAACTATGGTGGATTCAGAGC
CTCTGAGCGCACTGGCTAGCGTGGCAAATGTAAAAATCAAAGGCAATCAAGCTTTGAAGA
TTGGCAGCTGAGAACAAGGATAGCTGAACATAGAAATTGGAGCATGGCTTATGAACATCT
AGCTAACATAGTAAATAAAATGTTCTCTTTTGTTTTGGGTTCTGGTTCGAAGTCAGGTGG
AGTGCATTCATTGTTAAATTTGATAGTAGACAAAATGACATGAATCTCTAGTGCAAAGCA
TTCAGATTCTCTGCTTTCTATCATGCACATCCCTCCCTGAATACCTCGTCTTCCAGATGA
GCCGCAGTTTACTTAGATATATACATTGTGTTAATGTTTTTCTTTTAAAATAGTGCTGTT
GACTTGC