Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0499200-01
CDS Infomation	cds chromosome:IRGSP-1.0:8:24639010:24645616:1 gene:Os08g0499200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 8 description:Similar to Chloride channel protein CLC-f (AtCLC-f). Splice isoform 2. (Os08t0499200-01)
Sequence	ATGATGGCGCAGGCGAGCGACCTGGAGCCGCTGCGGTCGGGGGCGGGGGCGCTGCCGTCG TCGGCGGACCCGGACTCGCCGTCGACGCCGAGGAGGAGCCGCGTGCGCGAGCTGCTGCGG AGCCTGGACCGCCGGCTGTCCAGCCGGGGGCGGCACCACCGCCACGCAGCGGAGGGCGCG GCGGCGTCCCCCAGGGGCGGCGGCGGCGGGGAGCCCGGGTCCGAGGACAGCGACGAGCTC GGGGACGGCGCGCCGCCCGAGTGGGCGCTGCTGCTCGTCGGCTGCCTCCTCGGCCTCGCC ACCGGCATCTGCGTCGCTGCGTTCAACCGCGGGGTGCATATCATACATGAATGGGCATGG GCAGGCACACCCACAGAGGGAGCTGCTTGGCTTCGCCTCCAGAGACTTGCTGATACATGG CATAGGATATTGTTAATTCCAGTGACTGGTGGAGTTGTTGTTGGTATGATGCACGGATTA CTGGAGATATTTGAGCAGATAAAACAATCATTATCATCTCAAAGGGAAGGTGTTGATTTC ATGGCTGCGATTTTTCCTACAATCAAAGCAATACAAGCTGCAATTACTCTAGGGACGGGA TGTTCATTGGGGCCAGAAGGGCCAAGCGTTGATATTGGTAAATCTTGTGCATATGGATGT GCTGAAATGATGGAGAACAATAGGGAACGGAGAATTGCTCTTGTTGCTGCCGGATCAGCT GCTGGGATTGCTTCAGGTTTTAATGCTGCGGTTGCTGGATGTTTTTTTGCTATTGAAACA GTACTGAGGCCACTTCGAGCAGAGAATTCACCGCCATTTACCACTGCTATGATTATATTG GCATCAGTTATATCATCAACTGTGTCCAATGTTTTGCTAGGGGAGAAGGCAGCTTTTATT GTCCCGACGTATGAACTAAAATCTGCTGCTGAGTTACCACTCTACCTTATCCTAGGCATG CTTTGTGGGGTAGTGAGTGTGGCATTCAGACAGTTGGTGGTTTGGTTCACAAAGACTTTT GACTTGATAAGGAAGAAATTCAGCCTCCCTGCTGTAGTATGCCCTGCGTTAGGGGGTCTT GGAGCAGGTTTAATAGCTCTAAGGTACCCTGGAATACTGTACTGGGGCTTCACCAATGTT GATGAAATTTTACATACTGGAAAAAGTGCCTCAGCCCCTGGAATCTGGCTCTTAGCTCAG TTGGCTGCTGCAAAAGTTGTAGCAACTGCACTCTGCAAGGGTTCTGGTCTTGTTGGTGGC CTTTATGCTCCAAGCTTGATGATTGGTGCTGCTGTTGGTGCTGTATTTGGAGGCTCAGCA GCAGAACTAATAAACTCTGCCATCCCGGGTAACACTGCTGTTGCACACCCTCAAGCTTAT GCACTAGTGGGAATGGCTGCCACACTAGCATCAGTCTGCTCAGTTCCATTGACTTCAGTA CTACTACTATTCGAACTAACAAAAGATTACAGAATTTTACTGCCTCTGATGGGAGCTGTT GGTTTAGCAATATGGGTGCCATCTGTTGTAATGTCTGGCAACAAAGAGGCGTTTGAGGCT ACATCTCCTCGGCATGGTTATTCTTCACTATTACCTCCTACAGATAGGAATGAGACAGAC CGGAGACGACCAGACAGAGATGACGTTGAACTTGCAATTCTAGACGATGATCCCTACCGC TATGGTATTAACAATGAGGATATGCTTCTTGATGATTTAAAGGTATCACAAGCAATGTCA AAGCAATTTATTAAGGTTACACCTACAGTGACTATCAAGGAGGCAACAAGGCTTATGCAT GATAAGCAGCAAAATTGTGTTCTTGTAGTAGACAGTGAAGATTTTCTTGAAGGAATTGTT ACGATTGGTGACATTCGCCGTAAAGGATTTGAATCTGAATTAAGTGAAGATACTCCACGG AATGGGGCAAATTCATCTACTTTGGATGCAAATTCTTCTCTTGTTTCATCATGCCTCACT AGAGGGTTTCAGTACCACGGCAATGAAAGAGGACTAGTGACCTGCTTTCCAGATACAGAT CTGAGCACTGCTAAGGTGCTCATGGAAGTGAAAGGTATCAAGCAACTTCCAGTGGTAAAA CGGAGGGCTGGCCGTAGGAATGATGGAAGACGTAAGGTCCTTGGCCTTCTTCATTATGAT TCAATAGGGTGGTGCTTAAGGGAAGAGCTTGAGCGGTGGAAAGCCATTTATCAAAGAGAG AATTTCCAGCAGTCAGCTGTTAATGGCCACTGA

Peptide Sequence

PEP ID	Os08t0499200-01
PEP Infomation	pep chromosome:IRGSP-1.0:8:24639010:24645616:1 gene:Os08g0499200 transcript:Os08t0499200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 8 description:Similar to Chloride channel protein CLC-f (AtCLC-f). Splice isoform 2. (Os08t0499200-01)
Sequence	MMAQASDLEPLRSGAGALPSSADPDSPSTPRRSRVRELLRSLDRRLSSRGRHHRHAAEGA AASPRGGGGGEPGSEDSDELGDGAPPEWALLLVGCLLGLATGICVAAFNRGVHIIHEWAW AGTPTEGAAWLRLQRLADTWHRILLIPVTGGVVVGMMHGLLEIFEQIKQSLSSQREGVDF MAAIFPTIKAIQAAITLGTGCSLGPEGPSVDIGKSCAYGCAEMMENNRERRIALVAAGSA AGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSNVLLGEKAAFI VPTYELKSAAELPLYLILGMLCGVVSVAFRQLVVWFTKTFDLIRKKFSLPAVVCPALGGL GAGLIALRYPGILYWGFTNVDEILHTGKSASAPGIWLLAQLAAAKVVATALCKGSGLVGG LYAPSLMIGAAVGAVFGGSAAELINSAIPGNTAVAHPQAYALVGMAATLASVCSVPLTSV LLLFELTKDYRILLPLMGAVGLAIWVPSVVMSGNKEAFEATSPRHGYSSLLPPTDRNETD RRRPDRDDVELAILDDDPYRYGINNEDMLLDDLKVSQAMSKQFIKVTPTVTIKEATRLMH DKQQNCVLVVDSEDFLEGIVTIGDIRRKGFESELSEDTPRNGANSSTLDANSSLVSSCLT RGFQYHGNERGLVTCFPDTDLSTAKVLMEVKGIKQLPVVKRRAGRRNDGRRKVLGLLHYD SIGWCLREELERWKAIYQRENFQQSAVNGH

Transcript Sequence

Transcript ID	Os08t0499200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:24639010:24645616:1 gene:Os08g0499200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 8 description:Similar to Chloride channel protein CLC-f (AtCLC-f). Splice isoform 2. (Os08t0499200-01)
Sequence	CTTCTCCTACCTCACCTCTCGCCATCGCCACCCCCAACCGCCGACGAGATCGAGGCCACC GGCGAGATCCGCCGCGAGATCCTCCCCTTCCCCTACTCCGATGCGATCGCCTCGGTTCTA GATCCCCCTCGCTCGCACGCGGCGGGGCATGATGGCGCAGGCGAGCGACCTGGAGCCGCT GCGGTCGGGGGCGGGGGCGCTGCCGTCGTCGGCGGACCCGGACTCGCCGTCGACGCCGAG GAGGAGCCGCGTGCGCGAGCTGCTGCGGAGCCTGGACCGCCGGCTGTCCAGCCGGGGGCG GCACCACCGCCACGCAGCGGAGGGCGCGGCGGCGTCCCCCAGGGGCGGCGGCGGCGGGGA GCCCGGGTCCGAGGACAGCGACGAGCTCGGGGACGGCGCGCCGCCCGAGTGGGCGCTGCT GCTCGTCGGCTGCCTCCTCGGCCTCGCCACCGGCATCTGCGTCGCTGCGTTCAACCGCGG GGTGCATATCATACATGAATGGGCATGGGCAGGCACACCCACAGAGGGAGCTGCTTGGCT TCGCCTCCAGAGACTTGCTGATACATGGCATAGGATATTGTTAATTCCAGTGACTGGTGG AGTTGTTGTTGGTATGATGCACGGATTACTGGAGATATTTGAGCAGATAAAACAATCATT ATCATCTCAAAGGGAAGGTGTTGATTTCATGGCTGCGATTTTTCCTACAATCAAAGCAAT ACAAGCTGCAATTACTCTAGGGACGGGATGTTCATTGGGGCCAGAAGGGCCAAGCGTTGA TATTGGTAAATCTTGTGCATATGGATGTGCTGAAATGATGGAGAACAATAGGGAACGGAG AATTGCTCTTGTTGCTGCCGGATCAGCTGCTGGGATTGCTTCAGGTTTTAATGCTGCGGT TGCTGGATGTTTTTTTGCTATTGAAACAGTACTGAGGCCACTTCGAGCAGAGAATTCACC GCCATTTACCACTGCTATGATTATATTGGCATCAGTTATATCATCAACTGTGTCCAATGT TTTGCTAGGGGAGAAGGCAGCTTTTATTGTCCCGACGTATGAACTAAAATCTGCTGCTGA GTTACCACTCTACCTTATCCTAGGCATGCTTTGTGGGGTAGTGAGTGTGGCATTCAGACA GTTGGTGGTTTGGTTCACAAAGACTTTTGACTTGATAAGGAAGAAATTCAGCCTCCCTGC TGTAGTATGCCCTGCGTTAGGGGGTCTTGGAGCAGGTTTAATAGCTCTAAGGTACCCTGG AATACTGTACTGGGGCTTCACCAATGTTGATGAAATTTTACATACTGGAAAAAGTGCCTC AGCCCCTGGAATCTGGCTCTTAGCTCAGTTGGCTGCTGCAAAAGTTGTAGCAACTGCACT CTGCAAGGGTTCTGGTCTTGTTGGTGGCCTTTATGCTCCAAGCTTGATGATTGGTGCTGC TGTTGGTGCTGTATTTGGAGGCTCAGCAGCAGAACTAATAAACTCTGCCATCCCGGGTAA CACTGCTGTTGCACACCCTCAAGCTTATGCACTAGTGGGAATGGCTGCCACACTAGCATC AGTCTGCTCAGTTCCATTGACTTCAGTACTACTACTATTCGAACTAACAAAAGATTACAG AATTTTACTGCCTCTGATGGGAGCTGTTGGTTTAGCAATATGGGTGCCATCTGTTGTAAT GTCTGGCAACAAAGAGGCGTTTGAGGCTACATCTCCTCGGCATGGTTATTCTTCACTATT ACCTCCTACAGATAGGAATGAGACAGACCGGAGACGACCAGACAGAGATGACGTTGAACT TGCAATTCTAGACGATGATCCCTACCGCTATGGTATTAACAATGAGGATATGCTTCTTGA TGATTTAAAGGTATCACAAGCAATGTCAAAGCAATTTATTAAGGTTACACCTACAGTGAC TATCAAGGAGGCAACAAGGCTTATGCATGATAAGCAGCAAAATTGTGTTCTTGTAGTAGA CAGTGAAGATTTTCTTGAAGGAATTGTTACGATTGGTGACATTCGCCGTAAAGGATTTGA ATCTGAATTAAGTGAAGATACTCCACGGAATGGGGCAAATTCATCTACTTTGGATGCAAA TTCTTCTCTTGTTTCATCATGCCTCACTAGAGGGTTTCAGTACCACGGCAATGAAAGAGG ACTAGTGACCTGCTTTCCAGATACAGATCTGAGCACTGCTAAGGTGCTCATGGAAGTGAA AGGTATCAAGCAACTTCCAGTGGTAAAACGGAGGGCTGGCCGTAGGAATGATGGAAGACG TAAGGTCCTTGGCCTTCTTCATTATGATTCAATAGGGTGGTGCTTAAGGGAAGAGCTTGA GCGGTGGAAAGCCATTTATCAAAGAGAGAATTTCCAGCAGTCAGCTGTTAATGGCCACTG AGCAAAAAGAAGTGCTGAAGTTTTGGTTGTACGTTTTAGTGAAGAGAAATACCAAATTTA TAAAGTGACATTTCAACATGATTAGGGTTAACTTAAAACCTCCTCACTCAAAAAATATCC TCGTCAAATGTAAAGTTTCTTGGAGTTGCCACATATGCACATTTTTGTGCAGAGAAAATA TATAAGCGGTGATGGTGTGATTCGCTTTTGTTAGCGTTGACTGTTTCGAAGTTCTGACAT GACAGTATACTGGGTACACTTTGGTCTGTCCCGCAAAAAAGCATTGCAAATGGTGACTGT TTATTGTTTCTGTCCGATCTTCTGCTGCACGTCAATTACTGGATAATGCAAATCTGCGGA CCAGTTACTCCTGTAAAGTTATAAAATACCTTTTTTTTTGCTGC