Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0493900-02
CDS Infomation

cds chromosome:IRGSP-1.0:8:24384480:24388792:1 gene:Os08g0493900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsWD40-161 description:WD40 repeat-like domain containing protein. (Os08t0493900-01);WD40 repeat-like domain containing protein. (Os08t0493900-02)
Sequence

ATGTCGCCGCCGGCAGCAGGAGGGCTCGCCGGAGCCCGCGGCGAGGGCGGCGGAGCAGGG
GTGGGGAGGGTCTTCGTGGGCGCTGGGTGCAACCGCGTGGTGAACAACGTCTCCTGGGGA
GCTTGCGGCCTCGTCGCCTTCGGCGCGCAGAACGCCGTCGCGCTCTTTTCCCCTTTGAGA
GGTGAGATTGTGACGACGCTTCCGGGGCACAAGGCCACGGTGAACTGCACCCTTTGGTTG
CCCACGAAGAAGGATGTGCTCCAAATCCGCTCCAGGGAGAGACACTATCTATTATCAGGA
AGTTCTGATGGTATTATCATGGCATGGAAGATTGATTCTGGAAAAGGAGAGTGGACTCGT
GCGTTGCAACTGCCTGTGATGCACAAAAAAGGGGTCACCTGTCTTGCTGGAAGGATGGTG
TCAGATACTGTTTCAATATTTGCCTCCACCTCCTCAGATGGAACTGTGGTCATTTGGAAA
ATGGAAGATGAACCAACTAGTGTTGGCAGCTGTGAAGTGTCTTGTTTGCATTCTATATCC
GTTGGTCCAAAGCCAATGGTTTCACTTTCATTAGCAGTATTGCCTGGGCAGGGAGGCCAT
CTCATTTTGGCAATGGGAGGTTTGGATCACAAGGTCCACATTTATTGTGGGGATCAGTCA
GGCAAGTTCATTAAAGCTTGTCAGCTTAAAGGTCATTCTGATTGGATTAGAAGTTTAGAC
TTCTCTTTACCTGTGATGATGGGCAGTGAGGAGCACAGCCTTTTCCTTGTTAGCTCATCT
CAGGATAGAACCATTCGGATCTGGAAAATGAATTCGGATGCTGTTTCTTCTGCTCACACA
ACACCCAGAAAGGAAGATATTGGGATTGCCTCCTATATTGAAGGTCCTTTGTTTGTGTCC
AGTAATACACATTACCAGGTATCATTGGAGTCCCTTCTCGTTGGTCATGAGGACTGGGTG
TATTCTGTAGAATGGCAGCCTCCTACGCTACTAACTGATGATGAAGCTCATCAGCCAATG
AGCATATTATCTGCATCCATGGACAAGATGATGATGATATGGAAGCCAGAGAAAAATACC
GGTCTTTGGATAAATTCAGTGACTGTTGGTGAGTTAAGTCACTCAGCACTGGGATTCTAT
GGTGGCCATTGGCAGCCTGATGGCAAATCCATCCTTGCACATGGATATGGTGGATCGTTT
CATATGTGGAGGGATGTTGGACTGGGTTCTGAAAACTGGCAGCCTCAGATAGTCCCATCT
GGTCATTTTGCACCTGTATCTGACTTAACATGGTCAAGATCTGGTGAATATCTGTTATCA
GTCAGCCATGATCAGACAACACGCATATTTGCTCCTTGGAGAAGCCAAGTTAGCCCAGGG
GATGTGACTTGTTGGCGTGAAATTGCTCGCCCTCAAATTCATGGGCACGATATTAACTGT
GTGGCATTCATTCAGGGTACCGGGAACCACCGGTTCGTTAGTGGCGCCGATGAAAAGGTC
TCTAGAGTCTTTGAAGCTCCTTTGTCATTTTTGAAGACCCTTCAACATGCAACTTTGTTG
AAAACTGATAACTCTGGAGATTTTGACGATGTGCAAGTACTTGGAGCAAATATGTCTGCT
CTTGGACTTTCACAGAAACCTATATATACACATGGACCAAGGGAAACCCAAAGCAGTATT
TCTAATGACGGGCCAGATTCCATGGAGACCATTCCTGATGCAGTGCCAACTGTGTTCACT
GAGCCTCCTGTAGAGGATCAACTAGCCTGGAATACTCTATGGCCTGAAACTCACAAACTT
TATGGCCATGGAAATGAACTCTTCTCCATCTGCTGTGATCATGAAGGGAAGATCATTGCA
TCATCTTGCAAGGCTCAATCAGCACCAGTTGCTGAGATCTGGCTGTGGGAGGTTGGAACA
TGGAAAGCTGTTGGCCGCCTGCAATCTCACAACCTGACAGTTACACAGATGGAGTTTTCT
CGTGACAATGCTTTTCTTTTGAGTGTATCAAGGGATCGTCATTTGTCTGTCTTCTCAATC
AGGAAGACAGATGATGGAGCAGAGCATCATCTTGTTGCAAAGCTTGAAGCACACAAAAGA
ATTATATGGGCATGCTCATGGAACCCCTTCAGCTACGAATTTGCAACTGGATCAAGGGAC
AAGACCGTCAAGATATGGAGCGTTCAAGATTCATCTTCTGTCAAGCTGCTCGTGACGTTG
CCTCAGTTCCACGACAGTGTGACAGCATTGGCCTGGACAGGCCGTGACCGTGCTAGTAAT
GCTGGCATTCTCGCTATTGGCATGGACAACGGAATGATCGAGCTCTGGAACATTTCAGGG
GGGAGAGCCTCCACTGACAGCAGCGGCTCAGGTTCATCTCCGCTCAGCTTTGCATGCATG
CTCCGTTTTGATCCTCTGCTGTGTCATGTATCAACTGTGCACCGTTTACGGTGGCAGAAA
TCTGACTCATCCGATGAGAAATCAGCGCTACAGTTAGCTTCTTGTGGAGCTGATCATTGT
GTAAGGGTGTTTGAGGTCCGTGACATTTGA

Peptide Sequence

PEP ID

Os08t0493900-02
PEP Infomation

pep chromosome:IRGSP-1.0:8:24384480:24388792:1 gene:Os08g0493900 transcript:Os08t0493900-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsWD40-161 description:WD40 repeat-like domain containing protein. (Os08t0493900-01);WD40 repeat-like domain containing protein. (Os08t0493900-02)
Sequence

MSPPAAGGLAGARGEGGGAGVGRVFVGAGCNRVVNNVSWGACGLVAFGAQNAVALFSPLR
GEIVTTLPGHKATVNCTLWLPTKKDVLQIRSRERHYLLSGSSDGIIMAWKIDSGKGEWTR
ALQLPVMHKKGVTCLAGRMVSDTVSIFASTSSDGTVVIWKMEDEPTSVGSCEVSCLHSIS
VGPKPMVSLSLAVLPGQGGHLILAMGGLDHKVHIYCGDQSGKFIKACQLKGHSDWIRSLD
FSLPVMMGSEEHSLFLVSSSQDRTIRIWKMNSDAVSSAHTTPRKEDIGIASYIEGPLFVS
SNTHYQVSLESLLVGHEDWVYSVEWQPPTLLTDDEAHQPMSILSASMDKMMMIWKPEKNT
GLWINSVTVGELSHSALGFYGGHWQPDGKSILAHGYGGSFHMWRDVGLGSENWQPQIVPS
GHFAPVSDLTWSRSGEYLLSVSHDQTTRIFAPWRSQVSPGDVTCWREIARPQIHGHDINC
VAFIQGTGNHRFVSGADEKVSRVFEAPLSFLKTLQHATLLKTDNSGDFDDVQVLGANMSA
LGLSQKPIYTHGPRETQSSISNDGPDSMETIPDAVPTVFTEPPVEDQLAWNTLWPETHKL
YGHGNELFSICCDHEGKIIASSCKAQSAPVAEIWLWEVGTWKAVGRLQSHNLTVTQMEFS
RDNAFLLSVSRDRHLSVFSIRKTDDGAEHHLVAKLEAHKRIIWACSWNPFSYEFATGSRD
KTVKIWSVQDSSSVKLLVTLPQFHDSVTALAWTGRDRASNAGILAIGMDNGMIELWNISG
GRASTDSSGSGSSPLSFACMLRFDPLLCHVSTVHRLRWQKSDSSDEKSALQLASCGADHC
VRVFEVRDI

Transcript Sequence

Transcript ID

Os08t0493900-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:24384480:24388792:1 gene:Os08g0493900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsWD40-161 description:WD40 repeat-like domain containing protein. (Os08t0493900-01);WD40 repeat-like domain containing protein. (Os08t0493900-02)
Sequence

GCAGCCTCTTCCTCCGGTGCGGGCCACGCGATGTCGCCGCCGGCAGCAGGAGGGCTCGCC
GGAGCCCGCGGCGAGGGCGGCGGAGCAGGGGTGGGGAGGGTCTTCGTGGGCGCTGGGTGC
AACCGCGTGGTGAACAACGTCTCCTGGGGAGCTTGCGGCCTCGTCGCCTTCGGCGCGCAG
AACGCCGTCGCGCTCTTTTCCCCTTTGAGAGGTGAGATTGTGACGACGCTTCCGGGGCAC
AAGGCCACGGTGAACTGCACCCTTTGGTTGCCCACGAAGAAGGATGTGCTCCAAATCCGC
TCCAGGGAGAGACACTATCTATTATCAGGAAGTTCTGATGGTATTATCATGGCATGGAAG
ATTGATTCTGGAAAAGGAGAGTGGACTCGTGCGTTGCAACTGCCTGTGATGCACAAAAAA
GGGGTCACCTGTCTTGCTGGAAGGATGGTGTCAGATACTGTTTCAATATTTGCCTCCACC
TCCTCAGATGGAACTGTGGTCATTTGGAAAATGGAAGATGAACCAACTAGTGTTGGCAGC
TGTGAAGTGTCTTGTTTGCATTCTATATCCGTTGGTCCAAAGCCAATGGTTTCACTTTCA
TTAGCAGTATTGCCTGGGCAGGGAGGCCATCTCATTTTGGCAATGGGAGGTTTGGATCAC
AAGGTCCACATTTATTGTGGGGATCAGTCAGGCAAGTTCATTAAAGCTTGTCAGCTTAAA
GGTCATTCTGATTGGATTAGAAGTTTAGACTTCTCTTTACCTGTGATGATGGGCAGTGAG
GAGCACAGCCTTTTCCTTGTTAGCTCATCTCAGGATAGAACCATTCGGATCTGGAAAATG
AATTCGGATGCTGTTTCTTCTGCTCACACAACACCCAGAAAGGAAGATATTGGGATTGCC
TCCTATATTGAAGGTCCTTTGTTTGTGTCCAGTAATACACATTACCAGGTATCATTGGAG
TCCCTTCTCGTTGGTCATGAGGACTGGGTGTATTCTGTAGAATGGCAGCCTCCTACGCTA
CTAACTGATGATGAAGCTCATCAGCCAATGAGCATATTATCTGCATCCATGGACAAGATG
ATGATGATATGGAAGCCAGAGAAAAATACCGGTCTTTGGATAAATTCAGTGACTGTTGGT
GAGTTAAGTCACTCAGCACTGGGATTCTATGGTGGCCATTGGCAGCCTGATGGCAAATCC
ATCCTTGCACATGGATATGGTGGATCGTTTCATATGTGGAGGGATGTTGGACTGGGTTCT
GAAAACTGGCAGCCTCAGATAGTCCCATCTGGTCATTTTGCACCTGTATCTGACTTAACA
TGGTCAAGATCTGGTGAATATCTGTTATCAGTCAGCCATGATCAGACAACACGCATATTT
GCTCCTTGGAGAAGCCAAGTTAGCCCAGGGGATGTGACTTGTTGGCGTGAAATTGCTCGC
CCTCAAATTCATGGGCACGATATTAACTGTGTGGCATTCATTCAGGGTACCGGGAACCAC
CGGTTCGTTAGTGGCGCCGATGAAAAGGTCTCTAGAGTCTTTGAAGCTCCTTTGTCATTT
TTGAAGACCCTTCAACATGCAACTTTGTTGAAAACTGATAACTCTGGAGATTTTGACGAT
GTGCAAGTACTTGGAGCAAATATGTCTGCTCTTGGACTTTCACAGAAACCTATATATACA
CATGGACCAAGGGAAACCCAAAGCAGTATTTCTAATGACGGGCCAGATTCCATGGAGACC
ATTCCTGATGCAGTGCCAACTGTGTTCACTGAGCCTCCTGTAGAGGATCAACTAGCCTGG
AATACTCTATGGCCTGAAACTCACAAACTTTATGGCCATGGAAATGAACTCTTCTCCATC
TGCTGTGATCATGAAGGGAAGATCATTGCATCATCTTGCAAGGCTCAATCAGCACCAGTT
GCTGAGATCTGGCTGTGGGAGGTTGGAACATGGAAAGCTGTTGGCCGCCTGCAATCTCAC
AACCTGACAGTTACACAGATGGAGTTTTCTCGTGACAATGCTTTTCTTTTGAGTGTATCA
AGGGATCGTCATTTGTCTGTCTTCTCAATCAGGAAGACAGATGATGGAGCAGAGCATCAT
CTTGTTGCAAAGCTTGAAGCACACAAAAGAATTATATGGGCATGCTCATGGAACCCCTTC
AGCTACGAATTTGCAACTGGATCAAGGGACAAGACCGTCAAGATATGGAGCGTTCAAGAT
TCATCTTCTGTCAAGCTGCTCGTGACGTTGCCTCAGTTCCACGACAGTGTGACAGCATTG
GCCTGGACAGGCCGTGACCGTGCTAGTAATGCTGGCATTCTCGCTATTGGCATGGACAAC
GGAATGATCGAGCTCTGGAACATTTCAGGGGGGAGAGCCTCCACTGACAGCAGCGGCTCA
GGTTCATCTCCGCTCAGCTTTGCATGCATGCTCCGTTTTGATCCTCTGCTGTGTCATGTA
TCAACTGTGCACCGTTTACGGTGGCAGAAATCTGACTCATCCGATGAGAAATCAGCGCTA
CAGTTAGCTTCTTGTGGAGCTGATCATTGTGTAAGGGTGTTTGAGGTCCGTGACATTTGA
GAAAGTTATATGATGGTGTAGAGCTTGGCTCATGAGCTGCATCTAGTTCTTGCAGAACAT
AGGCTTAGACATCTGGATCTCATTGCCAAACTTTTATATGTGATTTGGCAGTGTTTGTCT
TGCCAGTATCTTCATAGATGTGTTGTACTCCTGTCCCAAAAGTATAAGCCCTTCTAGAGT
TTTTTCTTATGG