Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0487500-01
CDS Infomation

cds chromosome:IRGSP-1.0:8:24113051:24114250:-1 gene:Os08g0487500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os08t0487500-01)
Sequence

ATGGCGTCCTCGTCTCTCCTCGTCCGGCTCGCCTCCGACGAGATGCCCCAAACCCTAGAT
GCGTCGTCGTCGTCTTCGTGCTACGACGCCTTCGTGCCGGTGTTCCACCCGGATCCGTCG
TCGGGGTTCTCGGCGGCGTCGGTGGTGGCGGCCGCCGACCGCCTCCGCAGCCAGTTCCTC
TCCGTGGAGCCCGACCTCTTCCACGACGCGCTCGTCGCGCCAAGCCCCGACCACCTCGGC
TTCCCCGATGAGGAGGAGGAGGAGGAGATCCGGTGGGATTGCCTCCAATTGGATGACGAC
GACGAGGAGGAGGAGGGGGTGGCGGATCTGCGGCTTGAGGCCTCCAACGCGGCGGAGGAA
TTCGATTGGGAGGAGGTGGCATCGCCCTCCGGCGGCGCCGGGATGGATCAGCCGGAGCCC
GAGTGGGAGGTCCTCGCCGACGTGCCGCCGCCGCCGCCGCCGCCCGCCGACGAGGGCTTC
GTGTACACCTCCGACCGTGACGTGTACGAGGTGCTCGTCGGGGAGGGTTTGTTCCTGAAG
AGCAAGCCGCCCGCGGCGAGGTCGGCCGTCGAGGCGCTACCGTCCGCCGTCGTCGCCGCC
GGCGAGGACGGCGAAGGGGAGGAGTGCGCGGTGTGCAGGGACGGCGTCGCCGCCGGGGAG
CGCGTGAAGAGGCTGCCCTGCTCGCACGGTTACCACGAGGAGTGCATCATGCCGTGGCTC
GACGTGCGCAACTCGTGCCCGCTCTGCCGCTTCGAGCTGCCCACCGACGACCCCCAGTAC
GAGAGCTGGAAGGCCTCGCGAGCTGCGGCTGCCTGA

Peptide Sequence

PEP ID

Os08t0487500-01
PEP Infomation

pep chromosome:IRGSP-1.0:8:24113051:24114250:-1 gene:Os08g0487500 transcript:Os08t0487500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os08t0487500-01)
Sequence

MASSSLLVRLASDEMPQTLDASSSSSCYDAFVPVFHPDPSSGFSAASVVAAADRLRSQFL
SVEPDLFHDALVAPSPDHLGFPDEEEEEEIRWDCLQLDDDDEEEEGVADLRLEASNAAEE
FDWEEVASPSGGAGMDQPEPEWEVLADVPPPPPPPADEGFVYTSDRDVYEVLVGEGLFLK
SKPPAARSAVEALPSAVVAAGEDGEGEECAVCRDGVAAGERVKRLPCSHGYHEECIMPWL
DVRNSCPLCRFELPTDDPQYESWKASRAAAA

Transcript Sequence

Transcript ID

Os08t0487500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:24113051:24114250:-1 gene:Os08g0487500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os08t0487500-01)
Sequence

AGGGCGCGATTTTTTCGTTCCCCTCTCTATCTCTCGCGTCCATGGCGTCCTCGTCTCTCC
TCGTCCGGCTCGCCTCCGACGAGATGCCCCAAACCCTAGATGCGTCGTCGTCGTCTTCGT
GCTACGACGCCTTCGTGCCGGTGTTCCACCCGGATCCGTCGTCGGGGTTCTCGGCGGCGT
CGGTGGTGGCGGCCGCCGACCGCCTCCGCAGCCAGTTCCTCTCCGTGGAGCCCGACCTCT
TCCACGACGCGCTCGTCGCGCCAAGCCCCGACCACCTCGGCTTCCCCGATGAGGAGGAGG
AGGAGGAGATCCGGTGGGATTGCCTCCAATTGGATGACGACGACGAGGAGGAGGAGGGGG
TGGCGGATCTGCGGCTTGAGGCCTCCAACGCGGCGGAGGAATTCGATTGGGAGGAGGTGG
CATCGCCCTCCGGCGGCGCCGGGATGGATCAGCCGGAGCCCGAGTGGGAGGTCCTCGCCG
ACGTGCCGCCGCCGCCGCCGCCGCCCGCCGACGAGGGCTTCGTGTACACCTCCGACCGTG
ACGTGTACGAGGTGCTCGTCGGGGAGGGTTTGTTCCTGAAGAGCAAGCCGCCCGCGGCGA
GGTCGGCCGTCGAGGCGCTACCGTCCGCCGTCGTCGCCGCCGGCGAGGACGGCGAAGGGG
AGGAGTGCGCGGTGTGCAGGGACGGCGTCGCCGCCGGGGAGCGCGTGAAGAGGCTGCCCT
GCTCGCACGGTTACCACGAGGAGTGCATCATGCCGTGGCTCGACGTGCGCAACTCGTGCC
CGCTCTGCCGCTTCGAGCTGCCCACCGACGACCCCCAGTACGAGAGCTGGAAGGCCTCGC
GAGCTGCGGCTGCCTGAATTGCTGCGCGGTAAAAAAAAAAGGCAAGCCTTTCTTTTCTTG
CACAGATTTTATAGAGTTGTATGTCTTGGGTTTCAAACTGGTACTATGATGAAAGAACCA
AACTGGTATGATGAAAGAAAGCGTAGAGGTAGTCGCAGAGATGGTTTTGCACCTTTCGAT
TTGTTTACTTTTTTTCTTAAAAGAGGGATTTGTGTTGTGACTTAAGGTTGCGAGGATATT
ACATAAGTTTATCCTATATATATACTGTTGTATTTATTCTGAATTTGTAGAGTAGCTTCT
GTATTACATTTTGCCCTGCAGCACAATTTTGTAAATGGATATGGTGGTGAAAATTTCAGC