Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0484200-01
CDS Infomation

cds chromosome:IRGSP-1.0:8:23921006:23922529:1 gene:Os08g0484200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os08t0484200-01)
Sequence

ATGGGGTCGCCGCGAGGACGCCGCCGCGGCGACAATGGCCGCCTCCTCCTCCTCGCCGCC
GCCGCCGTCGTCATTGCCTCGCTGGTCGGCGGCGGCGCGGCGCAGCCGACGACGTCCGGG
CCCGGCCCGAACTACTTCAACCCCAAGAGCTTCAACCCGTCCATGGCCGTCGTGATCGTG
GTCTTGGTCACCGCCTTCTTCTTCCTCGGGTTCTTCTCGATCTACATCCGGCGATGCGCC
GGCGGGCCGTTGGGTGGGCCCGGGGGGTATGGCGTCGGCGGCGGCGGCGGTGGACGTGTG
GGTGGTGGGTTCACGTTTGCGGCGGCGCGGTCGAGGAGGGTGAGGGGGCTTGACCCCGCC
GTGCTGGGCGCGTTCCCGACCATGGCGTACGCCGACGTGAAGGCGCACAAGGCCGGCAAG
GGCGCGCTCGAGTGCGCCGTGTGCCTCAGCGAGTTCGACGACGACGAGACGCTCCGGCTG
CTGCCCAGGTGCTCCCACGCGTTCCACGCCGACTGCATCGACGCGTGGCTGGCGTCCCAC
GTCACGTGCCCCGTCTGCCGCGCCAACCTCGCCTTCGACGCCGGCGTCCCGCCGCCGCCG
CTGGCGCCGCCGCATGCGTTGACCACCGGGCAAGATGTTGCGGCTGCGCCGCCGCAGCCG
GCGGCGCCAGAGCAGGTGACGGTGGACGTCGTCGTCGCGGATGCCGAGGAGACGGAGGAG
AGGATCAGGAGGGAGGAGGCGGCCGAGCTGATGCGGATCGGAAGCGTGAAGCGCGCGCTG
CGGAGCAAGTCCGGCCGCCGGCCGCCGCAGTTCCCGCGGTCGCACACCACGGGGCACTCG
CTCGCCGCCGCCGCCGCCGTGCCCGCCACCGCCGACGACGCCGCGGAGCGGTACACGCTG
AGGCTCCCCGATCACGTGCTCCGGGAAATCGTCACCTCGGCGAGGCTACGCCGCACGACG
AGCCTCCAATCGTTCCGCACCACCGCCGCCGCCGGCGGCGGCGCCCGCGCCGGGAGGAGC
GTCCGGCTCGGCCAGTCCGGGAGGTGGTCCAACGTGTCGTCGCTGATGCGCACGTTCTCG
GCCAGGCTGCCGGCGTGGGGCTCCGCTCGACGCGGCGCCGAAGCCGACTCTCCGGGGAAG
GACGGCGCCAAGGTCGCCGGCGACTGCACCGCCTCCGTGGAGCAACACTGCGACGGCGGC
GGCGGCGGCGCGTGCCCACGTCCACTTGGTGACCATGTATGA

Peptide Sequence

PEP ID

Os08t0484200-01
PEP Infomation

pep chromosome:IRGSP-1.0:8:23921006:23922529:1 gene:Os08g0484200 transcript:Os08t0484200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os08t0484200-01)
Sequence

MGSPRGRRRGDNGRLLLLAAAAVVIASLVGGGAAQPTTSGPGPNYFNPKSFNPSMAVVIV
VLVTAFFFLGFFSIYIRRCAGGPLGGPGGYGVGGGGGGRVGGGFTFAAARSRRVRGLDPA
VLGAFPTMAYADVKAHKAGKGALECAVCLSEFDDDETLRLLPRCSHAFHADCIDAWLASH
VTCPVCRANLAFDAGVPPPPLAPPHALTTGQDVAAAPPQPAAPEQVTVDVVVADAEETEE
RIRREEAAELMRIGSVKRALRSKSGRRPPQFPRSHTTGHSLAAAAAVPATADDAAERYTL
RLPDHVLREIVTSARLRRTTSLQSFRTTAAAGGGARAGRSVRLGQSGRWSNVSSLMRTFS
ARLPAWGSARRGAEADSPGKDGAKVAGDCTASVEQHCDGGGGGACPRPLGDHV

Transcript Sequence

Transcript ID

Os08t0484200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:23921006:23922529:1 gene:Os08g0484200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os08t0484200-01)
Sequence

GTGCCACTCTCTCCCTCCCGCCTTAGCTAAGCTCCCATCAATTCGCCCCACCCGAAAGGG
GCAAAGGAGAAAGCCACTGACTCCGATGGGGTCGCCGCGAGGACGCCGCCGCGGCGACAA
TGGCCGCCTCCTCCTCCTCGCCGCCGCCGCCGTCGTCATTGCCTCGCTGGTCGGCGGCGG
CGCGGCGCAGCCGACGACGTCCGGGCCCGGCCCGAACTACTTCAACCCCAAGAGCTTCAA
CCCGTCCATGGCCGTCGTGATCGTGGTCTTGGTCACCGCCTTCTTCTTCCTCGGGTTCTT
CTCGATCTACATCCGGCGATGCGCCGGCGGGCCGTTGGGTGGGCCCGGGGGGTATGGCGT
CGGCGGCGGCGGCGGTGGACGTGTGGGTGGTGGGTTCACGTTTGCGGCGGCGCGGTCGAG
GAGGGTGAGGGGGCTTGACCCCGCCGTGCTGGGCGCGTTCCCGACCATGGCGTACGCCGA
CGTGAAGGCGCACAAGGCCGGCAAGGGCGCGCTCGAGTGCGCCGTGTGCCTCAGCGAGTT
CGACGACGACGAGACGCTCCGGCTGCTGCCCAGGTGCTCCCACGCGTTCCACGCCGACTG
CATCGACGCGTGGCTGGCGTCCCACGTCACGTGCCCCGTCTGCCGCGCCAACCTCGCCTT
CGACGCCGGCGTCCCGCCGCCGCCGCTGGCGCCGCCGCATGCGTTGACCACCGGGCAAGA
TGTTGCGGCTGCGCCGCCGCAGCCGGCGGCGCCAGAGCAGGTGACGGTGGACGTCGTCGT
CGCGGATGCCGAGGAGACGGAGGAGAGGATCAGGAGGGAGGAGGCGGCCGAGCTGATGCG
GATCGGAAGCGTGAAGCGCGCGCTGCGGAGCAAGTCCGGCCGCCGGCCGCCGCAGTTCCC
GCGGTCGCACACCACGGGGCACTCGCTCGCCGCCGCCGCCGCCGTGCCCGCCACCGCCGA
CGACGCCGCGGAGCGGTACACGCTGAGGCTCCCCGATCACGTGCTCCGGGAAATCGTCAC
CTCGGCGAGGCTACGCCGCACGACGAGCCTCCAATCGTTCCGCACCACCGCCGCCGCCGG
CGGCGGCGCCCGCGCCGGGAGGAGCGTCCGGCTCGGCCAGTCCGGGAGGTGGTCCAACGT
GTCGTCGCTGATGCGCACGTTCTCGGCCAGGCTGCCGGCGTGGGGCTCCGCTCGACGCGG
CGCCGAAGCCGACTCTCCGGGGAAGGACGGCGCCAAGGTCGCCGGCGACTGCACCGCCTC
CGTGGAGCAACACTGCGACGGCGGCGGCGGCGGCGCGTGCCCACGTCCACTTGGTGACCA
TGTATGATGACGTGTCCCGCTGATTGTTAGTCAAAGTATTAGAAGTACTCCACTAATATT
AGGAAGGCGTCCTTGTCGTCACCGTTAATTCTCTTCTCTTTTCGGCGGCAATTTGTGTGT
ACATAAAGTCACAAAACTTTATTCTTCTTCGATTACAAAGTCGCAAAAAAAATTATGGTT
GGTTGAAACAATTTTGTGCGATTC