Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0480200-01
CDS Infomation

cds chromosome:IRGSP-1.0:8:23723615:23727247:-1 gene:Os08g0480200 gene_biotype:protein_coding transcript_biotype:protein_coding description:2OG-Fe(II) oxygenase domain containing protein. (Os08t0480200-01)
Sequence

ATGGTTGCGCCGTCTCGGCTCCCATCCCATGAGGAGCAATCCGCCGCCGCCGCAGCCGAC
GGCTCGGCCACACCGTCCCAAGGAATCCCCGTCGTCGATCTCGGCGTCCTCATCAACGGC
GCGGCCGACGAGCGGTCGCGGGCGATCCGCGACCTAGGCAGGGCATGCGAGGATTGGGGC
TTCTTCATGGTGACTAACCATGGGGTGCCCGAGGCTCTCCGAGAAGCAATCATGGACGCC
TGCAAGGAGCTGTTCAGATTACCTTTGGAGGAGAAGAAAGAGTACATGCGTGCCAAGCCG
ATGGATCCTATACGGATCGGTACAGGTTTCTACTCTGTCGTCGACGCCGTACCATGCAGG
AGGGACTACCTGAAGATGTTCTCTCATCCTGAATTCCACTGCCCCGAAAAGCCCGCAAAG
CTGAGGGAGATTGCAACGGAGTACGCGACCTGCACGAGAGCCCTGTTGCTGGAGCTCACC
AAGGCGATCTCCGAGAGCCTGGGCCTCGCCGGCGGCCGCCTCTCTGAAGCGCTCAACCTC
GAGTCCTGCTTCCAGATCTTGGTGGGGAACCATTACCCTGCGTGCTCTAGACCGGACGAG
CAGGCGATGGGATTATCGGCTCACTCCGACCATGGCCTCCTCACCCTGCTCTTCCAGAAC
GGCGTCGATGGCCTCCAGGTCAAGCACGATGGCGAATGGCTCCTCGCGAAGCCCCTCCCG
GGCTCCTTCTTCGTCATCGCCGGCGATCAGTTGGAGATTGTGACCAACGGAAGGTACAAG
GGCGTGCTCCACCGCGCGGTGGTCGGCGGCGAGCAGTCGAGGATGTCGTTCGTGAGCCTG
ATCGGGCCGTGCATGGACACCGTCGTCGAGCCGCTGCCGGAGATGGCGGCGGACGGCCGG
GGCCTGGAGTTCCGGGGGATCAGGTACAGGGACTACATGGAGATGCAGCAGAGCAACAGC
ATCAACGAGAAGACGGCGCTTGACATCGTTCGCGTGATGCATCAGGCCGGGTGA

Peptide Sequence

PEP ID

Os08t0480200-01
PEP Infomation

pep chromosome:IRGSP-1.0:8:23723615:23727247:-1 gene:Os08g0480200 transcript:Os08t0480200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:2OG-Fe(II) oxygenase domain containing protein. (Os08t0480200-01)
Sequence

MVAPSRLPSHEEQSAAAAADGSATPSQGIPVVDLGVLINGAADERSRAIRDLGRACEDWG
FFMVTNHGVPEALREAIMDACKELFRLPLEEKKEYMRAKPMDPIRIGTGFYSVVDAVPCR
RDYLKMFSHPEFHCPEKPAKLREIATEYATCTRALLLELTKAISESLGLAGGRLSEALNL
ESCFQILVGNHYPACSRPDEQAMGLSAHSDHGLLTLLFQNGVDGLQVKHDGEWLLAKPLP
GSFFVIAGDQLEIVTNGRYKGVLHRAVVGGEQSRMSFVSLIGPCMDTVVEPLPEMAADGR
GLEFRGIRYRDYMEMQQSNSINEKTALDIVRVMHQAG

Transcript Sequence

Transcript ID

Os08t0480200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:23723615:23727247:-1 gene:Os08g0480200 gene_biotype:protein_coding transcript_biotype:protein_coding description:2OG-Fe(II) oxygenase domain containing protein. (Os08t0480200-01)
Sequence

GGCCGAAGCTGCGCTGGGTGACGAGAGCGAGCAGCTGGCGGGCGGCGACGAATGGCTCGA
CTGCGCTGGCGTGCACGGGAGGCGGCAGAGAGCAGCGGGCCAGCTGCAAGCCGACAGTGA
CGCCGGCAAGCAAGCAGTGCACAGCCATGGTTGCGCCGTCTCGGCTCCCATCCCATGAGG
AGCAATCCGCCGCCGCCGCAGCCGACGGCTCGGCCACACCGTCCCAAGGAATCCCCGTCG
TCGATCTCGGCGTCCTCATCAACGGCGCGGCCGACGAGCGGTCGCGGGCGATCCGCGACC
TAGGCAGGGCATGCGAGGATTGGGGCTTCTTCATGGTGACTAACCATGGGGTGCCCGAGG
CTCTCCGAGAAGCAATCATGGACGCCTGCAAGGAGCTGTTCAGATTACCTTTGGAGGAGA
AGAAAGAGTACATGCGTGCCAAGCCGATGGATCCTATACGGATCGGTACAGGTTTCTACT
CTGTCGTCGACGCCGTACCATGCAGGAGGGACTACCTGAAGATGTTCTCTCATCCTGAAT
TCCACTGCCCCGAAAAGCCCGCAAAGCTGAGGGAGATTGCAACGGAGTACGCGACCTGCA
CGAGAGCCCTGTTGCTGGAGCTCACCAAGGCGATCTCCGAGAGCCTGGGCCTCGCCGGCG
GCCGCCTCTCTGAAGCGCTCAACCTCGAGTCCTGCTTCCAGATCTTGGTGGGGAACCATT
ACCCTGCGTGCTCTAGACCGGACGAGCAGGCGATGGGATTATCGGCTCACTCCGACCATG
GCCTCCTCACCCTGCTCTTCCAGAACGGCGTCGATGGCCTCCAGGTCAAGCACGATGGCG
AATGGCTCCTCGCGAAGCCCCTCCCGGGCTCCTTCTTCGTCATCGCCGGCGATCAGTTGG
AGATTGTGACCAACGGAAGGTACAAGGGCGTGCTCCACCGCGCGGTGGTCGGCGGCGAGC
AGTCGAGGATGTCGTTCGTGAGCCTGATCGGGCCGTGCATGGACACCGTCGTCGAGCCGC
TGCCGGAGATGGCGGCGGACGGCCGGGGCCTGGAGTTCCGGGGGATCAGGTACAGGGACT
ACATGGAGATGCAGCAGAGCAACAGCATCAACGAGAAGACGGCGCTTGACATCGTTCGCG
TGATGCATCAGGCCGGGTGACATGTTGACATGCCAAGGAGGCAGTGCCATGTTAGGAATT
GGGCCGGCTGCACTACGACCCAACACAGTGAGTAGCCCAATCCTTGGCCCAAGCAAGATT
CTAGTGAAGAAGGTTGCTAACATGCCAGTACGTGAACAGTTCAGCAGAAGCTGATCCTGC
AGGGCCTGTGTAGTTTGCAGGCGCTGATTCGTTGTAAAGCTCGAACTGTGATATGTGGAA
TGTTCATCATCATCATATGGAAAATAAATGCCAAGTCCGAGTTTAATTCC