Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0478800-01
CDS Infomation

cds chromosome:IRGSP-1.0:8:23623292:23628557:-1 gene:Os08g0478800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phosphoglucose isomerase (PGI) family protein. (Os08t0478800-01)
Sequence

ATGGCTTCCATCTCCGGCGCGGCGGCGGCGGCGCCCTCCTCCTCCGGGGCGTCGTGCGGC
CTCCGCCTCCGGCGAGACCACCTCCCGCGCTCCTCCCACTTCCGCCTCGCCCGTCCCAGC
TCCATCACCGACGTCTCCCGCTCCTGCTCGTCGTCGTCATCCTCTCCTCCCCGCTCGCTC
AGCTCCAAGCAGTCGGGCCACGCCGACGTCCTCGCCCATGGCGCGGTGGACAAGGACCCC
ATCAGGCTGTGGAACCGCTACGTGGAGTGGCTGTACCAGCACAAGCAGCTGGGGCTGTTC
GTCGACGTGAGCCGGATCGGGTTCACCGAGGAGTTCCTGCGGCGGATGGAGGCGCCCATG
GGGCGGGCGTTCGCGGCGATGCGGGAGCTCGAGAAGGGCGCCATCGCCAACCCCGACGAG
GGCCGGATGGTCGGCCACTACTGGCTGCGCAACCCGGCCCTCGCCCCCAACTCCTTCCTC
CGCGACAAAATCGAGACCACGCTCGAACGCATCCTCGCGTTCGCCAGCGACGTCATCTCC
GCCAAGATAAGACCTCCATCCTCCCCTGCTGGCCGATTTACTCAAATACTTTCTATAGGA
ATTGGTGGTTCATCTTTGGGGCCACAATTTGTTGCGGAGGCACTTGCTCCAGATAACCCT
CCTCTGATGATAAGATTTATCGACAACACCGATCCAGCTGGAATTGACCATCAGATTGCA
CAGCTAGGACCAGAACTTGCATCAACTCTTGTGATTGTAATATCAAAGAGTGGAGGCACA
CCTGAAACACGAAATGGTCTATTAGAAGTACAAAAGGCCTTCCGAGATGCTGGACTAGAA
TTCTCGAAACAGGGTGTTGCAATTACTCAAGAGAATTCTTTATTAGATAACACTGCCAGA
ATAGAGGGGTGGTTAGCTAGATTTCCCATGTTTGACTGGGTTGGTGGTAGAACATCAGAA
ATGTCAGCTGTTGGTTTACTGCCAGCAGCATTACAGGGTATTGACATCAAGGAAATGCTA
GTTGGTGCTGCACAAATGGATGAGGAAACTAGGAATACTGAGATTAAGGAAAATCCAGCA
GCCTTGCTTGCATTGTGTTGGTATTGGGCATCGGATGGAATAGGCAGTAAGGATAGCCTG
CTTCTTTTGAGTAGATACTTGCAACAACTTGTCATGGAATCTCTTGGAAAAGAATTTGAC
CTTGATGGAAATCGGGTTAATCAGGGACTAACTGTTTATGGTAACAAAGGAAGCACAGAC
CAGCATGCCTACATTCAGCAGCTGAGAGAAGGTGTGCACAACTTCTTTGTTACTTTTATT
GAAGTTTTGCGCGATAGGCCTCCTGGTCATGAGTGGGAGCTTGAACCAAGTGTTACATGT
GGGGACTACTTGTTTGGAATGCTACATGGAACTCGTTCAGCTCTTTATGCAAATGACCGC
GAATCTATTACAGTCACTGTCCAAGAAGTAAACCCTAGAGCTGTTGGAGCACTTGTTGCA
CTCTATGAGCGTGCTGTCGGTCTTTATGCTTATTTAATCAACATCAATGCCTATCATCAA
CCTGGTGTCGAAGCAGGGAAAAAGGCTGCTGGAGAGGTGTTGGCACTTCAGAAAAGGATC
CTACTTGTTCTTAACGAAGCCAGCTGCAAGGACCCTGCTGAGCCATTGACACTGGATCAA
ATTGCAGATCGCTGCCACTGTCCTGAAGAGATCGAAATGATATACAAAATAATCCAACAC
ATGGCTGCAAACGATAGAGCTCTTATTGCAGAAGGCAACTGCGGGTCACCAAGAAGCATC
AAGGTCTACCTTGGAGAATGCAACGTGGATGATGATATGAATTCTTAA

Peptide Sequence

PEP ID

Os08t0478800-01
PEP Infomation

pep chromosome:IRGSP-1.0:8:23623292:23628557:-1 gene:Os08g0478800 transcript:Os08t0478800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phosphoglucose isomerase (PGI) family protein. (Os08t0478800-01)
Sequence

MASISGAAAAAPSSSGASCGLRLRRDHLPRSSHFRLARPSSITDVSRSCSSSSSSPPRSL
SSKQSGHADVLAHGAVDKDPIRLWNRYVEWLYQHKQLGLFVDVSRIGFTEEFLRRMEAPM
GRAFAAMRELEKGAIANPDEGRMVGHYWLRNPALAPNSFLRDKIETTLERILAFASDVIS
AKIRPPSSPAGRFTQILSIGIGGSSLGPQFVAEALAPDNPPLMIRFIDNTDPAGIDHQIA
QLGPELASTLVIVISKSGGTPETRNGLLEVQKAFRDAGLEFSKQGVAITQENSLLDNTAR
IEGWLARFPMFDWVGGRTSEMSAVGLLPAALQGIDIKEMLVGAAQMDEETRNTEIKENPA
ALLALCWYWASDGIGSKDSLLLLSRYLQQLVMESLGKEFDLDGNRVNQGLTVYGNKGSTD
QHAYIQQLREGVHNFFVTFIEVLRDRPPGHEWELEPSVTCGDYLFGMLHGTRSALYANDR
ESITVTVQEVNPRAVGALVALYERAVGLYAYLININAYHQPGVEAGKKAAGEVLALQKRI
LLVLNEASCKDPAEPLTLDQIADRCHCPEEIEMIYKIIQHMAANDRALIAEGNCGSPRSI
KVYLGECNVDDDMNS

Transcript Sequence

Transcript ID

Os08t0478800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:23623292:23628557:-1 gene:Os08g0478800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phosphoglucose isomerase (PGI) family protein. (Os08t0478800-01)
Sequence

AAAGCCACACGCTCCAACTCCGGCGATGGCTTCCATCTCCGGCGCGGCGGCGGCGGCGCC
CTCCTCCTCCGGGGCGTCGTGCGGCCTCCGCCTCCGGCGAGACCACCTCCCGCGCTCCTC
CCACTTCCGCCTCGCCCGTCCCAGCTCCATCACCGACGTCTCCCGCTCCTGCTCGTCGTC
GTCATCCTCTCCTCCCCGCTCGCTCAGCTCCAAGCAGTCGGGCCACGCCGACGTCCTCGC
CCATGGCGCGGTGGACAAGGACCCCATCAGGCTGTGGAACCGCTACGTGGAGTGGCTGTA
CCAGCACAAGCAGCTGGGGCTGTTCGTCGACGTGAGCCGGATCGGGTTCACCGAGGAGTT
CCTGCGGCGGATGGAGGCGCCCATGGGGCGGGCGTTCGCGGCGATGCGGGAGCTCGAGAA
GGGCGCCATCGCCAACCCCGACGAGGGCCGGATGGTCGGCCACTACTGGCTGCGCAACCC
GGCCCTCGCCCCCAACTCCTTCCTCCGCGACAAAATCGAGACCACGCTCGAACGCATCCT
CGCGTTCGCCAGCGACGTCATCTCCGCCAAGATAAGACCTCCATCCTCCCCTGCTGGCCG
ATTTACTCAAATACTTTCTATAGGAATTGGTGGTTCATCTTTGGGGCCACAATTTGTTGC
GGAGGCACTTGCTCCAGATAACCCTCCTCTGATGATAAGATTTATCGACAACACCGATCC
AGCTGGAATTGACCATCAGATTGCACAGCTAGGACCAGAACTTGCATCAACTCTTGTGAT
TGTAATATCAAAGAGTGGAGGCACACCTGAAACACGAAATGGTCTATTAGAAGTACAAAA
GGCCTTCCGAGATGCTGGACTAGAATTCTCGAAACAGGGTGTTGCAATTACTCAAGAGAA
TTCTTTATTAGATAACACTGCCAGAATAGAGGGGTGGTTAGCTAGATTTCCCATGTTTGA
CTGGGTTGGTGGTAGAACATCAGAAATGTCAGCTGTTGGTTTACTGCCAGCAGCATTACA
GGGTATTGACATCAAGGAAATGCTAGTTGGTGCTGCACAAATGGATGAGGAAACTAGGAA
TACTGAGATTAAGGAAAATCCAGCAGCCTTGCTTGCATTGTGTTGGTATTGGGCATCGGA
TGGAATAGGCAGTAAGGATAGCCTGCTTCTTTTGAGTAGATACTTGCAACAACTTGTCAT
GGAATCTCTTGGAAAAGAATTTGACCTTGATGGAAATCGGGTTAATCAGGGACTAACTGT
TTATGGTAACAAAGGAAGCACAGACCAGCATGCCTACATTCAGCAGCTGAGAGAAGGTGT
GCACAACTTCTTTGTTACTTTTATTGAAGTTTTGCGCGATAGGCCTCCTGGTCATGAGTG
GGAGCTTGAACCAAGTGTTACATGTGGGGACTACTTGTTTGGAATGCTACATGGAACTCG
TTCAGCTCTTTATGCAAATGACCGCGAATCTATTACAGTCACTGTCCAAGAAGTAAACCC
TAGAGCTGTTGGAGCACTTGTTGCACTCTATGAGCGTGCTGTCGGTCTTTATGCTTATTT
AATCAACATCAATGCCTATCATCAACCTGGTGTCGAAGCAGGGAAAAAGGCTGCTGGAGA
GGTGTTGGCACTTCAGAAAAGGATCCTACTTGTTCTTAACGAAGCCAGCTGCAAGGACCC
TGCTGAGCCATTGACACTGGATCAAATTGCAGATCGCTGCCACTGTCCTGAAGAGATCGA
AATGATATACAAAATAATCCAACACATGGCTGCAAACGATAGAGCTCTTATTGCAGAAGG
CAACTGCGGGTCACCAAGAAGCATCAAGGTCTACCTTGGAGAATGCAACGTGGATGATGA
TATGAATTCTTAATTTCATCATCGTTTTCTTTTCACCTTTTTGGTGAACTTGAGTGATCT
TTTTGAACTATAAGGGAAAATGATGCTACTTGCTGATGTGTATTCCTACAAACTATAGGT
CTACTCTCTTGTATAATATTTTTCCTAGCTCTACTCCATTTGTGATAGCAGGATCGGATT
AATGCAACTATATTTAGCTTGCATGGT