Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0478500-01
CDS Infomation	cds chromosome:IRGSP-1.0:8:23593702:23601132:-1 gene:Os08g0478500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family protein. (Os08t0478500-01)
Sequence	ATGGCGGAGGCGGCGGGTTCGTCGTCGTCGTCGTCGGCGTCGGCGGTGGTGGTGGCTGTG GTGATTGCGGTGGTGGTGGTGGTGTGGGTTGTGGTGCGGCGGAAGGTGAGGCGCGCCGCG GCGCGGAGGGAGGAGGTGCTGCGGCTCACGCGGCTGGCGCAGGAGGAGTCGGAGATGGCG GAGGTGGAGTGCGCGCGCGCCTACTACTCGGAGCTGTTCCCGAGCGTCGTGCACGCGACG GAGATGGTGGATGAGGCGGCGTGGGGGGCGCCGCCGGCCGTGGTTCCGGCTCAGGCGGAG GCAGAGGCGGAGATGGAGGCCCGGGCCCAGCCGCAGCCGCAGCCGCCGGTGGGTGCCAAG GGGGTCTGCGCGGTGTGCTTCCGGCCGACGACGTTCAGGTGCAAGCAGTGCAAGGCTGTC AAGTACTGTTCCTTCAAATGCCAGATAGCCCACTGGAGACAGGGTCATAAAAATGAATGC CGCCCACCAAGCACTGATGCTAATCATGATGATGTGGCTGAACTTTCTGTTGCAAAGGAA AGGAAAATTGAGCAGACAAGTGCTTCTGAAGAAAACATAGCTGAAACCAACACGGCAGCC ACCGTGAAGAATTTAAATGATAAAACAAAAGATATGCCCTCAGAAGTACTTGCTTCGGTG GAGGTTCCTGATGATGACCATTCTGTCAGTGCGGTCAAACTCCCTCAAAGTTCTTCACAA GTAGCTTCTCTTGGCAGTAGAAAGACAGAATCAAATATGAAACCTACAACTCCTGTTGAA AATGGTTCTTACACAAAGGACTTAGATGAGGCGTTGGTGTGTAGATTTCAACCTTCTCCA CCAAAGATTAGTGGCTCTGGAAGTCTTATCAACAAAGAGTCCTTAATTGATTCCAAGAAG CACCAGGATTGCTCTCAAACTAGTAACAGCAAAAAATATGCAGATAACAACAATGCTCAA GCTGCTCTACCTGTTGCAGTAGAACCTAAAACTTCCAGGACTGCTCTTCATGTGGAAGTT GGACACTCCAAGACAAAAGCTGCTGGCTCAGACAACATTGGTGTGTCAAAAATGGTGCCA TCTGTTTTGACTGTTGATAAAGTTTCTCCTGTTCCCGGTGGACGTTCTGTTACACCTAAT TCATCAAAAAGGGCTGATAATATTGCTGAAAGGAATTCTAAACCATCAGAGAAATCAATT TCAACAGCAAATAGCCTGGCAACATCTCTGAAAAAAATTGTCAGGCAGCAAACAGCACCA AAAGTTGTGAGGCATTATCCATCAGAGCCAACACATTTTCCATATGAGCTTTTCATTAAG CTCTATGAAAAGGTTGAATTGCAACCGTTTGGTCTTCATAACCTTGGCAATAGTTGCTAT GCAAATGCTGTTCTTCAGTGCTTAATGTTTACCCGACCACTTACATCATATCTTTTGGGA GGGCTTCATTCAAAAAATTGTTCCAAAAAGGAATGGTGCTTCATGTGTGAATTTGAAAAA CTCGTTGGGGAGGGCAGACAAGGCAAGATTGCTTTGTCACCAACTGGGATACTCTCTCAT TTGCCTGACATTGGAAGTAGCTTTGGTCCTGGTAAACAAGAAGATGCTCATGAATTCCTT AGGTACGCCATTGATGCTATGCAATCTGTATGCATGAAGGAAGCCAGGAAAAGCGGCACT CATCGGTTACACGAAGAAACAACACTTATGCAATTAATATTTGGGGGCTATCTGCGATCT AAGATAAGATGCACAAGATGTGATGCTACTTCCGAGCAACATGAGCGTATTTTGGATCTT ACTGTTGAAATAGATGGCGACATCAGTTCACTGGAAGGAGCACTTGAGCGATTTACATCT ACAGAAGTCTTGGATGGAGATAATAAATATAAATGCAGCAGATGCAAATCGCATGAGCGC GCTAAAAAGAAGCTGACAATATCGGAAGCACCAAATGTCCTGACTATTGCGCTGAAAAGA TATCAGTCTGGAAAGTTTGGAAAGATCAACAAAGCCATCAGATTTCCAGAGACCTTGAAC TTGCAGCGCTATATGAGCCCAAAAGCTGATGACACTTCCCCTGTTTACAGCCTGTATGCA GTGGTTGTCCATCATGATATTATGAATGCCGCCTTTTCTGGTCATTATGTATGCTATGTG AAGGACACGCATGGGAAGTGGTACAAAACAGATGACAGTCAGGTCAAACCTGTATCTCTG GAAAATGTCATGTCGAAGTGCGCATACATGCTGCTCTATGCAAGGTGTTCACCAAGAGCT CCAAGCTCTGTAAGGCCAGCGCTGATGGCTCAAGATCCAGCACGTGTAAAGAAGGACAAG GCAAGGGTAAATTCAGGACGGTGGCATGGAGGAGGTCCCATACACCAAGGTGGTCAGATG TACGCAGATCACATGACAGATGATTTGCCCCATACATATGACGAGTTTGGACATGGACCA TATTCGCCAGCAGAATCTCCTAGTCCAAGTGAGAGTTCATCAATTTTCACCAGTTCCGAC ACAGGGTCACATAGCACCGACAGCAGTGAAAGCACTAGAAACTCTACCAGTGAGGATATG GAACGCCTCATATTTGGTGATCAAGTTTCATACTTTGATGGCTCTATGTTCGGACATGGG GAAAACGGCCGTATGACTTATTCCCGATCAAAGTCTAGCTTGGGTACCAGTTCATCGGGT CAAGAGGTGGATCAGTATAGGCCTGACGAGCACAGGCTTCAGGGTGCCAGGGAGGGTTGG AATCAGGGCGATGAAAGTTCTTCCTTGTATACTAACCAAAGTAAACATCAATTTAGTAGT AAGTTAACAGAACAATATAGGAGGAGGTTAGATGGGACTGAGCATGATCCTGGAGAAGCC AATAGTGTTTTATTGAGGAGATCGGCTAGGGAAAGGACGGCCCAAACATTTTATTGA

Peptide Sequence

PEP ID	Os08t0478500-01
PEP Infomation	pep chromosome:IRGSP-1.0:8:23593702:23601132:-1 gene:Os08g0478500 transcript:Os08t0478500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family protein. (Os08t0478500-01)
Sequence	MAEAAGSSSSSSASAVVVAVVIAVVVVVWVVVRRKVRRAAARREEVLRLTRLAQEESEMA EVECARAYYSELFPSVVHATEMVDEAAWGAPPAVVPAQAEAEAEMEARAQPQPQPPVGAK GVCAVCFRPTTFRCKQCKAVKYCSFKCQIAHWRQGHKNECRPPSTDANHDDVAELSVAKE RKIEQTSASEENIAETNTAATVKNLNDKTKDMPSEVLASVEVPDDDHSVSAVKLPQSSSQ VASLGSRKTESNMKPTTPVENGSYTKDLDEALVCRFQPSPPKISGSGSLINKESLIDSKK HQDCSQTSNSKKYADNNNAQAALPVAVEPKTSRTALHVEVGHSKTKAAGSDNIGVSKMVP SVLTVDKVSPVPGGRSVTPNSSKRADNIAERNSKPSEKSISTANSLATSLKKIVRQQTAP KVVRHYPSEPTHFPYELFIKLYEKVELQPFGLHNLGNSCYANAVLQCLMFTRPLTSYLLG GLHSKNCSKKEWCFMCEFEKLVGEGRQGKIALSPTGILSHLPDIGSSFGPGKQEDAHEFL RYAIDAMQSVCMKEARKSGTHRLHEETTLMQLIFGGYLRSKIRCTRCDATSEQHERILDL TVEIDGDISSLEGALERFTSTEVLDGDNKYKCSRCKSHERAKKKLTISEAPNVLTIALKR YQSGKFGKINKAIRFPETLNLQRYMSPKADDTSPVYSLYAVVVHHDIMNAAFSGHYVCYV KDTHGKWYKTDDSQVKPVSLENVMSKCAYMLLYARCSPRAPSSVRPALMAQDPARVKKDK ARVNSGRWHGGGPIHQGGQMYADHMTDDLPHTYDEFGHGPYSPAESPSPSESSSIFTSSD TGSHSTDSSESTRNSTSEDMERLIFGDQVSYFDGSMFGHGENGRMTYSRSKSSLGTSSSG QEVDQYRPDEHRLQGAREGWNQGDESSSLYTNQSKHQFSSKLTEQYRRRLDGTEHDPGEA NSVLLRRSARERTAQTFY

Transcript Sequence

Transcript ID	Os08t0478500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:23593702:23601132:-1 gene:Os08g0478500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family protein. (Os08t0478500-01)
Sequence	GAAGGGGAGGGGAAAAAATTGGAAGCCCTAGATTTTGGCGGGTTGGCTACGGCGAGGTGC GGGGGAGGGGTCGGGGTCGGGATCGGCGGGCGGATCCGGTGGGTGGAGGAGGTTGGGCGG CGAGATCTATGCGGTGGGGAGGGGAGGGGAGGAGGAGGAGGAGGGGAGCGGGGTGAGAGG GGAGGAGGAGGTGGTGGATGGCGGAGGCGGCGGGTTCGTCGTCGTCGTCGTCGGCGTCGG CGGTGGTGGTGGCTGTGGTGATTGCGGTGGTGGTGGTGGTGTGGGTTGTGGTGCGGCGGA AGGTGAGGCGCGCCGCGGCGCGGAGGGAGGAGGTGCTGCGGCTCACGCGGCTGGCGCAGG AGGAGTCGGAGATGGCGGAGGTGGAGTGCGCGCGCGCCTACTACTCGGAGCTGTTCCCGA GCGTCGTGCACGCGACGGAGATGGTGGATGAGGCGGCGTGGGGGGCGCCGCCGGCCGTGG TTCCGGCTCAGGCGGAGGCAGAGGCGGAGATGGAGGCCCGGGCCCAGCCGCAGCCGCAGC CGCCGGTGGGTGCCAAGGGGGTCTGCGCGGTGTGCTTCCGGCCGACGACGTTCAGGTGCA AGCAGTGCAAGGCTGTCAAGTACTGTTCCTTCAAATGCCAGATAGCCCACTGGAGACAGG GTCATAAAAATGAATGCCGCCCACCAAGCACTGATGCTAATCATGATGATGTGGCTGAAC TTTCTGTTGCAAAGGAAAGGAAAATTGAGCAGACAAGTGCTTCTGAAGAAAACATAGCTG AAACCAACACGGCAGCCACCGTGAAGAATTTAAATGATAAAACAAAAGATATGCCCTCAG AAGTACTTGCTTCGGTGGAGGTTCCTGATGATGACCATTCTGTCAGTGCGGTCAAACTCC CTCAAAGTTCTTCACAAGTAGCTTCTCTTGGCAGTAGAAAGACAGAATCAAATATGAAAC CTACAACTCCTGTTGAAAATGGTTCTTACACAAAGGACTTAGATGAGGCGTTGGTGTGTA GATTTCAACCTTCTCCACCAAAGATTAGTGGCTCTGGAAGTCTTATCAACAAAGAGTCCT TAATTGATTCCAAGAAGCACCAGGATTGCTCTCAAACTAGTAACAGCAAAAAATATGCAG ATAACAACAATGCTCAAGCTGCTCTACCTGTTGCAGTAGAACCTAAAACTTCCAGGACTG CTCTTCATGTGGAAGTTGGACACTCCAAGACAAAAGCTGCTGGCTCAGACAACATTGGTG TGTCAAAAATGGTGCCATCTGTTTTGACTGTTGATAAAGTTTCTCCTGTTCCCGGTGGAC GTTCTGTTACACCTAATTCATCAAAAAGGGCTGATAATATTGCTGAAAGGAATTCTAAAC CATCAGAGAAATCAATTTCAACAGCAAATAGCCTGGCAACATCTCTGAAAAAAATTGTCA GGCAGCAAACAGCACCAAAAGTTGTGAGGCATTATCCATCAGAGCCAACACATTTTCCAT ATGAGCTTTTCATTAAGCTCTATGAAAAGGTTGAATTGCAACCGTTTGGTCTTCATAACC TTGGCAATAGTTGCTATGCAAATGCTGTTCTTCAGTGCTTAATGTTTACCCGACCACTTA CATCATATCTTTTGGGAGGGCTTCATTCAAAAAATTGTTCCAAAAAGGAATGGTGCTTCA TGTGTGAATTTGAAAAACTCGTTGGGGAGGGCAGACAAGGCAAGATTGCTTTGTCACCAA CTGGGATACTCTCTCATTTGCCTGACATTGGAAGTAGCTTTGGTCCTGGTAAACAAGAAG ATGCTCATGAATTCCTTAGGTACGCCATTGATGCTATGCAATCTGTATGCATGAAGGAAG CCAGGAAAAGCGGCACTCATCGGTTACACGAAGAAACAACACTTATGCAATTAATATTTG GGGGCTATCTGCGATCTAAGATAAGATGCACAAGATGTGATGCTACTTCCGAGCAACATG AGCGTATTTTGGATCTTACTGTTGAAATAGATGGCGACATCAGTTCACTGGAAGGAGCAC TTGAGCGATTTACATCTACAGAAGTCTTGGATGGAGATAATAAATATAAATGCAGCAGAT GCAAATCGCATGAGCGCGCTAAAAAGAAGCTGACAATATCGGAAGCACCAAATGTCCTGA CTATTGCGCTGAAAAGATATCAGTCTGGAAAGTTTGGAAAGATCAACAAAGCCATCAGAT TTCCAGAGACCTTGAACTTGCAGCGCTATATGAGCCCAAAAGCTGATGACACTTCCCCTG TTTACAGCCTGTATGCAGTGGTTGTCCATCATGATATTATGAATGCCGCCTTTTCTGGTC ATTATGTATGCTATGTGAAGGACACGCATGGGAAGTGGTACAAAACAGATGACAGTCAGG TCAAACCTGTATCTCTGGAAAATGTCATGTCGAAGTGCGCATACATGCTGCTCTATGCAA GGTGTTCACCAAGAGCTCCAAGCTCTGTAAGGCCAGCGCTGATGGCTCAAGATCCAGCAC GTGTAAAGAAGGACAAGGCAAGGGTAAATTCAGGACGGTGGCATGGAGGAGGTCCCATAC ACCAAGGTGGTCAGATGTACGCAGATCACATGACAGATGATTTGCCCCATACATATGACG AGTTTGGACATGGACCATATTCGCCAGCAGAATCTCCTAGTCCAAGTGAGAGTTCATCAA TTTTCACCAGTTCCGACACAGGGTCACATAGCACCGACAGCAGTGAAAGCACTAGAAACT CTACCAGTGAGGATATGGAACGCCTCATATTTGGTGATCAAGTTTCATACTTTGATGGCT CTATGTTCGGACATGGGGAAAACGGCCGTATGACTTATTCCCGATCAAAGTCTAGCTTGG GTACCAGTTCATCGGGTCAAGAGGTGGATCAGTATAGGCCTGACGAGCACAGGCTTCAGG GTGCCAGGGAGGGTTGGAATCAGGGCGATGAAAGTTCTTCCTTGTATACTAACCAAAGTA AACATCAATTTAGTAGTAAGTTAACAGAACAATATAGGAGGAGGTTAGATGGGACTGAGC ATGATCCTGGAGAAGCCAATAGTGTTTTATTGAGGAGATCGGCTAGGGAAAGGACGGCCC AAACATTTTATTGACATGTGGAGGGTTTGGGTTGTAGAGGTATAATAATGTAGGATGTAT TATTACCCCACTGCAATGAAAAAGGAAAAAATGGCTCAGTTTGTAG