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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0477900-00
CDS Infomation

cds chromosome:IRGSP-1.0:8:23572583:23573388:1 gene:Os08g0477900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 042 description:Helix-loop-helix DNA-binding domain containing protein. (Os08t0477900-00)
Sequence

ATGGTGACGGACGGGGAGTGCTCGGCGGCGGCGGTGAGGAAGGGTGGGTCGCCGGCGGTG
CGGAGCCACAGCGAGGCGGAGCGGAAGCGGCGGCAGCGCATCAACGCCCACCTCGCCACG
CTCCGCACCCTCGTCCCCTCCGCCTCCCGGATGGACAAGGCGGCGCTGCTGGGGGAGGTG
GTGCGGCACGTGCGGGAGCTGCGGTGCAGGGCGGACGACGCCACGGAGGGCGCCGACGTC
GTCGTCCCCGGGGAAGGCGACGAGGTCGGCGTCGAGGACGAGGACGACGACGAGGGCGAG
CGCGACGAGGGGTGTTATGTCGTCGGCGGCGGCGACAGGCGGTGGCGGCGGCGCGTCAGG
GCGTGGGTGTGCTGCGCCGACAGGCCGGGGCTCATGTCCGACCTGGGCCGCGCCGTGCGC
TCCGTCAGCGCGCGCCCCGTGCGCGCCGAGGTCGCCACCGTCGGCGGGAGGACGCGCAGC
GTCCTGGAGCTCGACGTCGTCGTCGCCTCCGACGCCGCCGACAACGACAGGGCCGTCGCG
CTCTCCGCCCTCCGCGCCGCCCTCCGCACCGTGCTTCTCAACCGCGAGGAGCTCCTCGCC
GCCGCCGCCGCCGCCGCCACCGACGGCTACAAGCGGCCACGCTTCTCGCCGAGGTGTAGC
AGCCTAACCTAA

Peptide Sequence

PEP ID

Os08t0477900-00
PEP Infomation

pep chromosome:IRGSP-1.0:8:23572583:23573388:1 gene:Os08g0477900 transcript:Os08t0477900-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 042 description:Helix-loop-helix DNA-binding domain containing protein. (Os08t0477900-00)
Sequence

MVTDGECSAAAVRKGGSPAVRSHSEAERKRRQRINAHLATLRTLVPSASRMDKAALLGEV
VRHVRELRCRADDATEGADVVVPGEGDEVGVEDEDDDEGERDEGCYVVGGGDRRWRRRVR
AWVCCADRPGLMSDLGRAVRSVSARPVRAEVATVGGRTRSVLELDVVVASDAADNDRAVA
LSALRAALRTVLLNREELLAAAAAAATDGYKRPRFSPRCSSLT

Transcript Sequence

Transcript ID

Os08t0477900-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:23572583:23573388:1 gene:Os08g0477900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 042 description:Helix-loop-helix DNA-binding domain containing protein. (Os08t0477900-00)
Sequence

CAACCACCTCGCTTGCCATTCTGGACTGCGGGTGAGATCGATGGTGACGGACGGGGAGTG
CTCGGCGGCGGCGGTGAGGAAGGGTGGGTCGCCGGCGGTGCGGAGCCACAGCGAGGCGGA
GCGGAAGCGGCGGCAGCGCATCAACGCCCACCTCGCCACGCTCCGCACCCTCGTCCCCTC
CGCCTCCCGGATGGACAAGGCGGCGCTGCTGGGGGAGGTGGTGCGGCACGTGCGGGAGCT
GCGGTGCAGGGCGGACGACGCCACGGAGGGCGCCGACGTCGTCGTCCCCGGGGAAGGCGA
CGAGGTCGGCGTCGAGGACGAGGACGACGACGAGGGCGAGCGCGACGAGGGGTGTTATGT
CGTCGGCGGCGGCGACAGGCGGTGGCGGCGGCGCGTCAGGGCGTGGGTGTGCTGCGCCGA
CAGGCCGGGGCTCATGTCCGACCTGGGCCGCGCCGTGCGCTCCGTCAGCGCGCGCCCCGT
GCGCGCCGAGGTCGCCACCGTCGGCGGGAGGACGCGCAGCGTCCTGGAGCTCGACGTCGT
CGTCGCCTCCGACGCCGCCGACAACGACAGGGCCGTCGCGCTCTCCGCCCTCCGCGCCGC
CCTCCGCACCGTGCTTCTCAACCGCGAGGAGCTCCTCGCCGCCGCCGCCGCCGCCGCCAC
CGACGGCTACAAGCGGCCACGCTTCTCGCCGAGGTGTAGCAGCCTAACCTAA