Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0477800-01
CDS Infomation

cds chromosome:IRGSP-1.0:8:23561842:23566384:1 gene:Os08g0477800 gene_biotype:protein_coding transcript_biotype:protein_coding description:PWWP domain containing protein. (Os08t0477800-01)
Sequence

ATGGTGAAAGAACATGCAGAGAAAGGAGATGGCGTTCAAGAATGCCAATCGTCTCCTGCG
CTTTCAGAAGATAACTTGAGGCACAGTTTCCGATTGGGAGATATTACATGGGTTAAGCAC
ACTGGCTCGTGGTGGCCAGCACAGGTCGTTGAAAATTCATGTATCAGCAGCAAGCCTAAG
AAGACGGCCAAGCATCATGTTCCAGTTCGTTTGTATGGCACTTGTGTACACATGTACGTA
GACCCTTGGAAGTCTAACATGGAATTCAAAATGATGCTGAAGCGAGAGAATAAAAGTGCA
ATGGAAGCATTCCATGAGGCCGTTAAGAAGGAGCTGTCCCACGTTAATTCACCTTGCGAT
TCTACTGAAGAAGCTGGCAACTTGAAAGCCAAGACCTCTTCCAAGAAAGTCAGAAAGCAA
AAGGGCTTAAAGGAATCACCAGCCTCTGAGCATATGGGAGAGGATACAAAAGACCAGCAT
AGTGCAGAGCAGCACCAAGAACTTGGATATACTGCAACAACTGGAGTTGCCACTCGTAAA
GGAAGAAGAACGCGAGAAGGTGCAAGACAACTCAGTCCTACTGATGGTGAAGATCAAGCC
AGTGGTAAAAAAGCTTCTATTGAGGGTTCAAGTTATAAGACAGAAAAACAAGTTGGTTCT
GTATATGATGAAGAGGCTTGTAAGATGACAACGACAGAGAGATCAGTGGGTAGAAGGGAA
GGACTGAGACGATCTGCTTGTACACCCATGAAGGCATATTTAGATCCATCGGAGGATAGA
ACATCACTTTTCAGTGATACAAGTGCAAGTGAAGGTGCAAATGAAGTAAATAGAACACCA
GAGAATTCAAATCAGCATGAAGATGATTCAACCATAGATGGAACTTTGGCTTCTCATGCA
GAAATAAGGGTTATGGTTAGGGATATACTGTTCAGTGACATTATTGCCAAGCAGCATGCT
GCTGAGATGGCATATGTAGATGAAGTGATCAATGGCATTTGCTGCGCTAGTGAATTGAAC
ATAACTGGTGATCCTACTCCTGTTGCAAAGGGTGGACGAGGCATCAAACGAGGTGGTAGT
AGGGCAGAGGCGGAGTCAAGTAACATTACACAGAGATCTAGAAAAGGGAGAATAGATCAA
GCAAGTAGCAATGGAAAGAAAAGAGCTAAGGACACCTCAGAAACCATGAATCATGACAAC
AGTCCCAACTCTTTGAGAGGGCCTTTCGATAGTACTGGATGCAGCCATGGAGGAACTGGG
GCAAGTTAG

Peptide Sequence

PEP ID

Os08t0477800-01
PEP Infomation

pep chromosome:IRGSP-1.0:8:23561842:23566384:1 gene:Os08g0477800 transcript:Os08t0477800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:PWWP domain containing protein. (Os08t0477800-01)
Sequence

MVKEHAEKGDGVQECQSSPALSEDNLRHSFRLGDITWVKHTGSWWPAQVVENSCISSKPK
KTAKHHVPVRLYGTCVHMYVDPWKSNMEFKMMLKRENKSAMEAFHEAVKKELSHVNSPCD
STEEAGNLKAKTSSKKVRKQKGLKESPASEHMGEDTKDQHSAEQHQELGYTATTGVATRK
GRRTREGARQLSPTDGEDQASGKKASIEGSSYKTEKQVGSVYDEEACKMTTTERSVGRRE
GLRRSACTPMKAYLDPSEDRTSLFSDTSASEGANEVNRTPENSNQHEDDSTIDGTLASHA
EIRVMVRDILFSDIIAKQHAAEMAYVDEVINGICCASELNITGDPTPVAKGGRGIKRGGS
RAEAESSNITQRSRKGRIDQASSNGKKRAKDTSETMNHDNSPNSLRGPFDSTGCSHGGTG
AS

Transcript Sequence

Transcript ID

Os08t0477800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:23561842:23566384:1 gene:Os08g0477800 gene_biotype:protein_coding transcript_biotype:protein_coding description:PWWP domain containing protein. (Os08t0477800-01)
Sequence

AGGTGTAGTAGTCGCGTGTCGCGAAATGTCCCGTCTCGTTGTCTCCTCTGCTCCTTGCGC
CGCCGCCAAGGCGAGTCGCGGCTGAGCCGGGAGGGGGCGGCGATCTCCATTTGGCGAGCA
GAGCAGGGGAGGGGATTCTGGTCTGAACTGATCATCATGGTGAAAGAACATGCAGAGAAA
GGAGATGGCGTTCAAGAATGCCAATCGTCTCCTGCGCTTTCAGAAGATAACTTGAGGCAC
AGTTTCCGATTGGGAGATATTACATGGGTTAAGCACACTGGCTCGTGGTGGCCAGCACAG
GTCGTTGAAAATTCATGTATCAGCAGCAAGCCTAAGAAGACGGCCAAGCATCATGTTCCA
GTTCGTTTGTATGGCACTTGTGTACACATGTACGTAGACCCTTGGAAGTCTAACATGGAA
TTCAAAATGATGCTGAAGCGAGAGAATAAAAGTGCAATGGAAGCATTCCATGAGGCCGTT
AAGAAGGAGCTGTCCCACGTTAATTCACCTTGCGATTCTACTGAAGAAGCTGGCAACTTG
AAAGCCAAGACCTCTTCCAAGAAAGTCAGAAAGCAAAAGGGCTTAAAGGAATCACCAGCC
TCTGAGCATATGGGAGAGGATACAAAAGACCAGCATAGTGCAGAGCAGCACCAAGAACTT
GGATATACTGCAACAACTGGAGTTGCCACTCGTAAAGGAAGAAGAACGCGAGAAGGTGCA
AGACAACTCAGTCCTACTGATGGTGAAGATCAAGCCAGTGGTAAAAAAGCTTCTATTGAG
GGTTCAAGTTATAAGACAGAAAAACAAGTTGGTTCTGTATATGATGAAGAGGCTTGTAAG
ATGACAACGACAGAGAGATCAGTGGGTAGAAGGGAAGGACTGAGACGATCTGCTTGTACA
CCCATGAAGGCATATTTAGATCCATCGGAGGATAGAACATCACTTTTCAGTGATACAAGT
GCAAGTGAAGGTGCAAATGAAGTAAATAGAACACCAGAGAATTCAAATCAGCATGAAGAT
GATTCAACCATAGATGGAACTTTGGCTTCTCATGCAGAAATAAGGGTTATGGTTAGGGAT
ATACTGTTCAGTGACATTATTGCCAAGCAGCATGCTGCTGAGATGGCATATGTAGATGAA
GTGATCAATGGCATTTGCTGCGCTAGTGAATTGAACATAACTGGTGATCCTACTCCTGTT
GCAAAGGGTGGACGAGGCATCAAACGAGGTGGTAGTAGGGCAGAGGCGGAGTCAAGTAAC
ATTACACAGAGATCTAGAAAAGGGAGAATAGATCAAGCAAGTAGCAATGGAAAGAAAAGA
GCTAAGGACACCTCAGAAACCATGAATCATGACAACAGTCCCAACTCTTTGAGAGGGCCT
TTCGATAGTACTGGATGCAGCCATGGAGGAACTGGGGCAAGTTAGCGCGCGTCAAATCAG
GATCATGCAGAGTCTTGCTTTGATTGCTCCGTCAGGATCCCCGTTTGGCAAAAATGGACT
GGTTGCATCAACCAGTTTATAATTCTGAGTTAATTCGAATATCCTTGAAAGGTATTCGAC
AGATATTCGAAAGCTATCATAACTCATGAACTCAGCTTCGGTTACACCTAACCAGTTGCT
CGCTTAGGTCTTTTGGAGAAACCCACAACGCTACATGGTCTTCTAGAATGCAATGCGATT
GCCTTTATGTGTAGTAGAATCGACTGAATTTAATTGCAATGTGAGCACAACATTGTATCT
GTAAGGCCACAAAATGGTCCCAGTATACTGCCAACTGAATTCATACATGAGTACACTATT
ATTATGTTAGTACTAGTACCAAGTTAAGGCTC