Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0476600-00
CDS Infomation

cds chromosome:IRGSP-1.0:8:23475471:23476235:1 gene:Os08g0476600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to plant-specific domain TIGR01570 family protein. (Os08t0476600-00)
Sequence

ATGCCATCGCTCATCGATGGCGCGGCCTCACTGCGGTCACTCCTCCGGCCGTCCTCCGAT
GGCCGCCGGACGACGAAGCTGTCCGGCGGTGGGGGCGGCGGCGGCGCCGGCGGCGTGGGC
GGCATCTTCAAGATGTTCAAGCTGCTGCCGATGCTCACCACGGGATGCAAGATGGCCGCG
CTGCTGGGGCGGCACAGCGGCGGCAGGGCGGCGCCCCTCCTCGCCGACCACGCGCCGACG
GTGACGCTGTTCGGGCACCGGCGCGGGCGGCTGAGCCTAGCCATCCACGAGGACACGCGC
GCGCCGCCGGCGTTCCTCATCGAGCTGCCCATGCTGGCGAGCGCGATGCACAGGGAGATG
GCCACGGGCACCGTGAAGCTGGCGCTGGAGAGCGACACCCGCAGCGCGCGGCGGCGGCTG
CTGGAGGAGTACGTCTGGGCCGTGTTCTGCAACGGCCGCAAGGCCGGGTACGCCATCCGG
CGGAAGGACGCGTCGGACGACGACCGCCACGTCCTGCGCCTGCTGCGCGGCGTGTCCATG
GGCGCCGGGGTGCTCCCGCCGCCGCCCGCCGACCGCAGGGGGGGCGCGGGCCCCGACGGC
GAGCTCACCTACATGCGCGCCCGCGTCGAGCGCGTCGTCGGGTCCAAGGACTCCGAGGCG
TTCTACATGATCAACCCCGACGACGGCAGCGACAACGGCGGCGCCGCCGGCCGCGACCGC
GAGTGCGCCCCGGAGCTGAGCATTTTCCTAGTGAGGAAGAAGTGA

Peptide Sequence

PEP ID

Os08t0476600-00
PEP Infomation

pep chromosome:IRGSP-1.0:8:23475471:23476235:1 gene:Os08g0476600 transcript:Os08t0476600-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to plant-specific domain TIGR01570 family protein. (Os08t0476600-00)
Sequence

MPSLIDGAASLRSLLRPSSDGRRTTKLSGGGGGGGAGGVGGIFKMFKLLPMLTTGCKMAA
LLGRHSGGRAAPLLADHAPTVTLFGHRRGRLSLAIHEDTRAPPAFLIELPMLASAMHREM
ATGTVKLALESDTRSARRRLLEEYVWAVFCNGRKAGYAIRRKDASDDDRHVLRLLRGVSM
GAGVLPPPPADRRGGAGPDGELTYMRARVERVVGSKDSEAFYMINPDDGSDNGGAAGRDR
ECAPELSIFLVRKK

Transcript Sequence

Transcript ID

Os08t0476600-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:23475471:23476235:1 gene:Os08g0476600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to plant-specific domain TIGR01570 family protein. (Os08t0476600-00)
Sequence

ATGCCATCGCTCATCGATGGCGCGGCCTCACTGCGGTCACTCCTCCGGCCGTCCTCCGAT
GGCCGCCGGACGACGAAGCTGTCCGGCGGTGGGGGCGGCGGCGGCGCCGGCGGCGTGGGC
GGCATCTTCAAGATGTTCAAGCTGCTGCCGATGCTCACCACGGGATGCAAGATGGCCGCG
CTGCTGGGGCGGCACAGCGGCGGCAGGGCGGCGCCCCTCCTCGCCGACCACGCGCCGACG
GTGACGCTGTTCGGGCACCGGCGCGGGCGGCTGAGCCTAGCCATCCACGAGGACACGCGC
GCGCCGCCGGCGTTCCTCATCGAGCTGCCCATGCTGGCGAGCGCGATGCACAGGGAGATG
GCCACGGGCACCGTGAAGCTGGCGCTGGAGAGCGACACCCGCAGCGCGCGGCGGCGGCTG
CTGGAGGAGTACGTCTGGGCCGTGTTCTGCAACGGCCGCAAGGCCGGGTACGCCATCCGG
CGGAAGGACGCGTCGGACGACGACCGCCACGTCCTGCGCCTGCTGCGCGGCGTGTCCATG
GGCGCCGGGGTGCTCCCGCCGCCGCCCGCCGACCGCAGGGGGGGCGCGGGCCCCGACGGC
GAGCTCACCTACATGCGCGCCCGCGTCGAGCGCGTCGTCGGGTCCAAGGACTCCGAGGCG
TTCTACATGATCAACCCCGACGACGGCAGCGACAACGGCGGCGCCGCCGGCCGCGACCGC
GAGTGCGCCCCGGAGCTGAGCATTTTCCTAGTGAGGAAGAAGTGA