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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0471000-00
CDS Infomation

cds chromosome:IRGSP-1.0:8:23158234:23159595:-1 gene:Os08g0471000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HEAT STRESS TRANSCRIPTION FACTOR B4A description:Similar to cDNA, clone: J065120N14, full insert sequence. (Os08t0471000-00)
Sequence

ATGGAGTGGGAGGAGGAGAGCGAGGCGGCGCGTCAGAAGGCGGCGGCGGCGTCGGCGTCG
GTGGTGCCCGCGCCGTTCCTGACCAAGACGTACCAGCTCGTCGACGACCCCGCGACCGAC
CACGTCGTGTCGTGGGAGGACGACGACGGCGGCGAGTCCGCCTCCAGCTTCGTCGTGTGG
CGGCCACCGGAGTTCGCCAGGGACATCCTCCCCAACTACTTCAAGCACAGCAACTTCTCC
TCCTTCGTCCGCCAGCTCAACACATATGGGTTTAGGAAGGTCGTGCCGGAGAGGTGGGAG
TTCGCCAACGAGTTCTTCAGGAAGGGCGAGAAGCAGCTGCTGTGCGAGATCCACCGGCGT
AAGTCCGCGGCGGCAACGTGGCCACCGTTCCCGCCGCCGCCGCCGCCTTTCTTTGCCCCG
CGCCATTTCGCGGCCGGTGCCTTCTTCCGCCACGGGGATGGCATGCTCCATGGCCGCTTG
GGCGCGTTGGTGACGACGACGGAGCGGCGCCATTGGTTTGAGAGCGCGGCGTTGCCGGTG
GCGCCGTCGTCGCGGCTGCTCTCGCAGCTGGGGCCGGTGATCGCACCGGCGCGCCGCGCG
GCGGCGACGCCGGAGGAGGAGGCGCTGATGCAGGAGAACCACCGGCTGCTACGCGGCAAC
GCGGCGCTGGTGCAGGAGCTGGCGCACATGCGCAAGCTCTACAGCGACATCATCTACTTC
GTGCAGAACCACGTGCGTCCCGTGGCGCCCAGCCCGGCCGCGGCGGCCGCGCTGCACGGC
CTCGGCGTTCTACGGCCGCCGCCGGCGGGCGGGAAGGCGCCCGCGTCCGAGGTGCGCGGC
GCCTCCGGCCGGAGCGCCACGTCCAGTAGCTCGCTCACGGTGGCCGAAGACCAGCCCACG
CTGCTGGCTCTGCGGCTGCCGCGGACGACGGAGAAGATCATCAACGAGGTGTCCGGCGGC
AACGGCGGCGGCAGCACCAAGCTGTTCGGCGTGCACCTGAGCAGCGCCGACGAGCAGACG
TCATCAGGCGCGAGCCGCAAGAGATCACCGCCGCAAGAGCAGCCTCCTACGTCGCCGGCG
CCGAAGCGGACGCTGGTGGTGGAGCACAGCGAGCTGAGATTGAGCATCGTGTCGCCACCG
TAG

Peptide Sequence

PEP ID

Os08t0471000-00
PEP Infomation

pep chromosome:IRGSP-1.0:8:23158234:23159595:-1 gene:Os08g0471000 transcript:Os08t0471000-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HEAT STRESS TRANSCRIPTION FACTOR B4A description:Similar to cDNA, clone: J065120N14, full insert sequence. (Os08t0471000-00)
Sequence

MEWEEESEAARQKAAAASASVVPAPFLTKTYQLVDDPATDHVVSWEDDDGGESASSFVVW
RPPEFARDILPNYFKHSNFSSFVRQLNTYGFRKVVPERWEFANEFFRKGEKQLLCEIHRR
KSAAATWPPFPPPPPPFFAPRHFAAGAFFRHGDGMLHGRLGALVTTTERRHWFESAALPV
APSSRLLSQLGPVIAPARRAAATPEEEALMQENHRLLRGNAALVQELAHMRKLYSDIIYF
VQNHVRPVAPSPAAAAALHGLGVLRPPPAGGKAPASEVRGASGRSATSSSSLTVAEDQPT
LLALRLPRTTEKIINEVSGGNGGGSTKLFGVHLSSADEQTSSGASRKRSPPQEQPPTSPA
PKRTLVVEHSELRLSIVSPP

Transcript Sequence

Transcript ID

Os08t0471000-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:23158234:23159595:-1 gene:Os08g0471000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HEAT STRESS TRANSCRIPTION FACTOR B4A description:Similar to cDNA, clone: J065120N14, full insert sequence. (Os08t0471000-00)
Sequence

TGGTTTTGAACCTCTGACACCATCATCGTCGCCGCTGCTCCTGGCTACGTCGTTGACGAC
GACGATGGAGTGGGAGGAGGAGAGCGAGGCGGCGCGTCAGAAGGCGGCGGCGGCGTCGGC
GTCGGTGGTGCCCGCGCCGTTCCTGACCAAGACGTACCAGCTCGTCGACGACCCCGCGAC
CGACCACGTCGTGTCGTGGGAGGACGACGACGGCGGCGAGTCCGCCTCCAGCTTCGTCGT
GTGGCGGCCACCGGAGTTCGCCAGGGACATCCTCCCCAACTACTTCAAGCACAGCAACTT
CTCCTCCTTCGTCCGCCAGCTCAACACATATGGGTTTAGGAAGGTCGTGCCGGAGAGGTG
GGAGTTCGCCAACGAGTTCTTCAGGAAGGGCGAGAAGCAGCTGCTGTGCGAGATCCACCG
GCGTAAGTCCGCGGCGGCAACGTGGCCACCGTTCCCGCCGCCGCCGCCGCCTTTCTTTGC
CCCGCGCCATTTCGCGGCCGGTGCCTTCTTCCGCCACGGGGATGGCATGCTCCATGGCCG
CTTGGGCGCGTTGGTGACGACGACGGAGCGGCGCCATTGGTTTGAGAGCGCGGCGTTGCC
GGTGGCGCCGTCGTCGCGGCTGCTCTCGCAGCTGGGGCCGGTGATCGCACCGGCGCGCCG
CGCGGCGGCGACGCCGGAGGAGGAGGCGCTGATGCAGGAGAACCACCGGCTGCTACGCGG
CAACGCGGCGCTGGTGCAGGAGCTGGCGCACATGCGCAAGCTCTACAGCGACATCATCTA
CTTCGTGCAGAACCACGTGCGTCCCGTGGCGCCCAGCCCGGCCGCGGCGGCCGCGCTGCA
CGGCCTCGGCGTTCTACGGCCGCCGCCGGCGGGCGGGAAGGCGCCCGCGTCCGAGGTGCG
CGGCGCCTCCGGCCGGAGCGCCACGTCCAGTAGCTCGCTCACGGTGGCCGAAGACCAGCC
CACGCTGCTGGCTCTGCGGCTGCCGCGGACGACGGAGAAGATCATCAACGAGGTGTCCGG
CGGCAACGGCGGCGGCAGCACCAAGCTGTTCGGCGTGCACCTGAGCAGCGCCGACGAGCA
GACGTCATCAGGCGCGAGCCGCAAGAGATCACCGCCGCAAGAGCAGCCTCCTACGTCGCC
GGCGCCGAAGCGGACGCTGGTGGTGGAGCACAGCGAGCTGAGATTGAGCATCGTGTCGCC
ACCGTAGCCATGTGTGCAGTGTGCTTAGTTAGTACTTCACGTAGTAGTATCTAGCTTGCC
TAGTTTAGC