Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0450200-01
CDS Infomation	cds chromosome:IRGSP-1.0:8:21981611:21984054:-1 gene:Os08g0450200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 26 description:Similar to Pectin methylesterase (Fragment). (Os08t0450200-01)
Sequence	ATGTCAACGACCTTCTCGGACTTCGATCCGATCACTGAGCGCCGCCATGTCGAGAGGCAG AGGCAAGAGCGCAGGCGCGTCATGGTTGCAGCCGGCGCCGCGTCGGTCATTCTTATCATC ATCGTCATGGGCGGCGCGGCCGTCGCCTACAACGCGAGCTTCGGTGATGGTGGCTCCTCT TCCTCCTCCGGTTCAGCGTCAGGTGGCGGCGCGCAGCCCAGCCTGCACGGCGTGTCCAAG ATCATCAAGGCGATGTGCGCGCAGACGGACTACAAGGACACCTGCGAGAAGAGCCTCGCC AAGGCCGCCGCGAACGCCAGCGCGTCGTCGTCGTCGTCGTCGCCCAAGGACGTCGTGCGC GCCTCCGTGGCCGTGATCGGCGACGCCATCGAGAAGGCGTTCGACAAGTCGAGCGTGATC GTCAGCGACGACCCGCGGGTCAAGGCCGCCGTCGCGGATTGCAAGGAGATCTACGAGAAC GCGAAGGACGACCTCGACCGCACTCTCGCAGGCATCGACGCCGGCGGCGTGGACGGGCTC ACCAAGGGCGGGTACCAGCTCCGCGTGTGGCTGAGCGCGGTGATCGCGCACCAGGAGACG TGCATCGACGGCTTCCCCGACGGCGACCTCAAGGACAAGATGAGGGACGCCATGGAGTCC GGCAAGGAGCTGACGAGCAACGCGCTGGCCCTCATCGGGAAGGCGTCCTCGTTCCTCGCC GCGCTCCACCTCCCAGCGTCTTCGGCGGCCAGCCACCGGCGGCTTCTCAGCTTCGCCTTC GATGAGGACGTCACAAAGCAGCCCGAAGTGAACCGTTCGTCCGGGAACAGCCTCCGGCGG CTTCTCAGCTTCGCCTTCGATGAGGACGCCACGAAGCAGCCCGAAGTGAACCGTTCGTCC GGGAACAGCCTCCGGCGACTTCTCAGCTTCGCCTTCGACGAGAACGCCCCAAAGCAGCCC AAAGGGAACGACGACGACGTCCTGGTCTGGGTGAACCGGCAGGAGAGGAGGCTGCTCAAG GCCAAGTTCCAGAACAAGCTCAAGCCCAACGTCGTCGTGGCCAAGGACGGCAGCGGCAAG TTCAAGACCATCAACGACGCGCTCGCCGCCATGCCCAAGAAGTACACCGGAAGGTACGTG ATCTACGTGAAGGAAGGGGTGTACGAGGAGTACGTGACGATCACCAAGAAGATGGCGAAC GTGACCATGTACGGCGACGGCGCCAAGAAGACCATCATCACCGGCAACCGGAACTTCGTC GACGGCCTCACCACCTACAAGACGGCGACCTTCAACGCGCAGGGCGACGGGTTCATGGGC GTCGCGCTGGGTTTCCGGAACACGGCCCGCGCGGCGAAGCACCAGGCGGTGGCGCTGCTG GTGCAGTCGGACAAGTCCATCTTCCTCAACTGCCGCATGGAGGGGCACCAGGACACGCTC TACGCGCACTCCAAGGCGCAGTTCTACCGCAACTGCGTCATCTCCGGCACCGTCGACTTC ATCTTCGGCGACGCCGCGGCGGTGTTCCAGAACTGCGTCATCGTGCTCCGCCGCCCGCTC GACAACCAGCAGAACATCGCCACGGCGCAGGGCCGCGCCGACCGCCGCGAGGCCACCGGC TTCGTGCTCCAGCACTACCGCTTCGCCGCCGAGTCGGCGCTCGGCGACGCCTCCCGCCCC GCCGTCCGCAGCTACCTCGCACGCCCGTGGCGCGAGTACTCGCGCACGCTCATCATGAAC TCCGACATCCCCGCCTTCGTAGACAAGGCCGGCTACCTCCCGTGGAGCGGCGACTTCGGG CTCAAGACGCTCTGGTACGCGGAGTACGGGAACAAGGGCGCCGGCGCCGCCACCGCCGGC CGCGTCAGCTGGCCGGGGTACAAGAAGGTGATCAGCAAGAAGGAGGCCACCAAGTTCACC GTGCAGAACTTCTTGCACGCCGAGCCATGGATCAAGCCGACCGGCACGCCGGTGAAGTAC GGCATGTGGGCGTGA

Peptide Sequence

PEP ID	Os08t0450200-01
PEP Infomation	pep chromosome:IRGSP-1.0:8:21981611:21984054:-1 gene:Os08g0450200 transcript:Os08t0450200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 26 description:Similar to Pectin methylesterase (Fragment). (Os08t0450200-01)
Sequence	MSTTFSDFDPITERRHVERQRQERRRVMVAAGAASVILIIIVMGGAAVAYNASFGDGGSS SSSGSASGGGAQPSLHGVSKIIKAMCAQTDYKDTCEKSLAKAAANASASSSSSSPKDVVR ASVAVIGDAIEKAFDKSSVIVSDDPRVKAAVADCKEIYENAKDDLDRTLAGIDAGGVDGL TKGGYQLRVWLSAVIAHQETCIDGFPDGDLKDKMRDAMESGKELTSNALALIGKASSFLA ALHLPASSAASHRRLLSFAFDEDVTKQPEVNRSSGNSLRRLLSFAFDEDATKQPEVNRSS GNSLRRLLSFAFDENAPKQPKGNDDDVLVWVNRQERRLLKAKFQNKLKPNVVVAKDGSGK FKTINDALAAMPKKYTGRYVIYVKEGVYEEYVTITKKMANVTMYGDGAKKTIITGNRNFV DGLTTYKTATFNAQGDGFMGVALGFRNTARAAKHQAVALLVQSDKSIFLNCRMEGHQDTL YAHSKAQFYRNCVISGTVDFIFGDAAAVFQNCVIVLRRPLDNQQNIATAQGRADRREATG FVLQHYRFAAESALGDASRPAVRSYLARPWREYSRTLIMNSDIPAFVDKAGYLPWSGDFG LKTLWYAEYGNKGAGAATAGRVSWPGYKKVISKKEATKFTVQNFLHAEPWIKPTGTPVKY GMWA

Transcript Sequence

Transcript ID	Os08t0450200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:21981611:21984054:-1 gene:Os08g0450200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 26 description:Similar to Pectin methylesterase (Fragment). (Os08t0450200-01)
Sequence	GCTCTCGCTCGATCCTCTCTCTCTGCCTTTGCCGATCGTGGTAAGGGCAGAGGGAGGGAG AGAGCGGCGGCGGCGACGCCGAAAACATTCTTCAGGCAGGGCGAGAAGGTCGTCGGCCAT GTCAACGACCTTCTCGGACTTCGATCCGATCACTGAGCGCCGCCATGTCGAGAGGCAGAG GCAAGAGCGCAGGCGCGTCATGGTTGCAGCCGGCGCCGCGTCGGTCATTCTTATCATCAT CGTCATGGGCGGCGCGGCCGTCGCCTACAACGCGAGCTTCGGTGATGGTGGCTCCTCTTC CTCCTCCGGTTCAGCGTCAGGTGGCGGCGCGCAGCCCAGCCTGCACGGCGTGTCCAAGAT CATCAAGGCGATGTGCGCGCAGACGGACTACAAGGACACCTGCGAGAAGAGCCTCGCCAA GGCCGCCGCGAACGCCAGCGCGTCGTCGTCGTCGTCGTCGCCCAAGGACGTCGTGCGCGC CTCCGTGGCCGTGATCGGCGACGCCATCGAGAAGGCGTTCGACAAGTCGAGCGTGATCGT CAGCGACGACCCGCGGGTCAAGGCCGCCGTCGCGGATTGCAAGGAGATCTACGAGAACGC GAAGGACGACCTCGACCGCACTCTCGCAGGCATCGACGCCGGCGGCGTGGACGGGCTCAC CAAGGGCGGGTACCAGCTCCGCGTGTGGCTGAGCGCGGTGATCGCGCACCAGGAGACGTG CATCGACGGCTTCCCCGACGGCGACCTCAAGGACAAGATGAGGGACGCCATGGAGTCCGG CAAGGAGCTGACGAGCAACGCGCTGGCCCTCATCGGGAAGGCGTCCTCGTTCCTCGCCGC GCTCCACCTCCCAGCGTCTTCGGCGGCCAGCCACCGGCGGCTTCTCAGCTTCGCCTTCGA TGAGGACGTCACAAAGCAGCCCGAAGTGAACCGTTCGTCCGGGAACAGCCTCCGGCGGCT TCTCAGCTTCGCCTTCGATGAGGACGCCACGAAGCAGCCCGAAGTGAACCGTTCGTCCGG GAACAGCCTCCGGCGACTTCTCAGCTTCGCCTTCGACGAGAACGCCCCAAAGCAGCCCAA AGGGAACGACGACGACGTCCTGGTCTGGGTGAACCGGCAGGAGAGGAGGCTGCTCAAGGC CAAGTTCCAGAACAAGCTCAAGCCCAACGTCGTCGTGGCCAAGGACGGCAGCGGCAAGTT CAAGACCATCAACGACGCGCTCGCCGCCATGCCCAAGAAGTACACCGGAAGGTACGTGAT CTACGTGAAGGAAGGGGTGTACGAGGAGTACGTGACGATCACCAAGAAGATGGCGAACGT GACCATGTACGGCGACGGCGCCAAGAAGACCATCATCACCGGCAACCGGAACTTCGTCGA CGGCCTCACCACCTACAAGACGGCGACCTTCAACGCGCAGGGCGACGGGTTCATGGGCGT CGCGCTGGGTTTCCGGAACACGGCCCGCGCGGCGAAGCACCAGGCGGTGGCGCTGCTGGT GCAGTCGGACAAGTCCATCTTCCTCAACTGCCGCATGGAGGGGCACCAGGACACGCTCTA CGCGCACTCCAAGGCGCAGTTCTACCGCAACTGCGTCATCTCCGGCACCGTCGACTTCAT CTTCGGCGACGCCGCGGCGGTGTTCCAGAACTGCGTCATCGTGCTCCGCCGCCCGCTCGA CAACCAGCAGAACATCGCCACGGCGCAGGGCCGCGCCGACCGCCGCGAGGCCACCGGCTT CGTGCTCCAGCACTACCGCTTCGCCGCCGAGTCGGCGCTCGGCGACGCCTCCCGCCCCGC CGTCCGCAGCTACCTCGCACGCCCGTGGCGCGAGTACTCGCGCACGCTCATCATGAACTC CGACATCCCCGCCTTCGTAGACAAGGCCGGCTACCTCCCGTGGAGCGGCGACTTCGGGCT CAAGACGCTCTGGTACGCGGAGTACGGGAACAAGGGCGCCGGCGCCGCCACCGCCGGCCG CGTCAGCTGGCCGGGGTACAAGAAGGTGATCAGCAAGAAGGAGGCCACCAAGTTCACCGT GCAGAACTTCTTGCACGCCGAGCCATGGATCAAGCCGACCGGCACGCCGGTGAAGTACGG CATGTGGGCGTGAAAAATATTTGTGCAGACACCCGGGCACCTGCATGCGTGCGCCATGTA CATATGCTTTCGAGAGGAGACGGTCCAATGTGAATATCTGATACCTGCCTGTTTCATGTA CATTCTGTGTGATTTTTACTTGTGCGCCGTGCATGCACATTTCAACC