Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0450100-01
CDS Infomation	cds chromosome:IRGSP-1.0:8:21978068:21981556:1 gene:Os08g0450100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 25 description:Similar to Pectinesterase (EC 3.1.1.11) (Fragment). (Os08t0450100-01)
Sequence	ATGGCGTCGATGTGTTCGAGGTCGATACCCCAGCTCATCCTCCTCCTCTCCCTGACCGTC TTCCTCCTCGCCAATGCGCATCCCATGGCCCCGCCATCGCCGCCGCGGAAGGCGGCCGCG CCTCCGACGGCGGCGAAGGGGGTGACCGGCATTTCGCCGGTGCTCGTCTCCACGCTGCGC GAGACGCTGGACGCGATCAAGAACGTCGCGTCCATCATCTCGTCGTTCCCCATCGGCGGC ATCCTCGGTGGCGGCGACCTCCGCCTCTCCTCCGCCATCGCCGACTGCCTCGACCTGCTC GACCTGTCCTCCGACGAGCTGTCCTGGTCGATGTCCACCACGTCGTCGTCGTCCTACCAG CCCACCAACGCCGGCGCCGCCACGTCGTCCCACGTCGGCACCGGTGACGCTCGCTCCGAC CTCCGGTCGTGGCTGGGCGGCGCGCTGAGCAACCAGGACACCTGCAAGGAGGGCCTCGAC GACACCGGCTCCGTGCTCGGCTCGCTCGTCGGCACCGCCCTCCAGACCGTCACGTCGCTC CTCACCGACGGCCTCGGCCAGGTGGCCGCCGGCGAGGCCTCGATCGCGTGGTCGTCGTCC CGCCGCGGCCTCGCCGAGGGCGGCGGCGCCCCGCACTGGCTGGGAGCCCGGGAACGCCGG CTGCTGCAGATGCCGTTGGGCCCCGGTGGCATGCCGGTGGACGCCGTGGTCGCCAAGGAC GGGAGCGGCAACTACACGACGGTGAGCGCGGCCGTGGACGCGGCGCCGACGGAGAGCGCG AGCCGGTACGTGATCTACGTGAAAAAGGGCGTGTACAAGGAGACGGTGGACATCAAGAAG AAGAAGTGGAACCTGATGCTGGTCGGCGACGGCATGGGCGTGACCGTCATCTCCGGCCAC CGGAACTACGTCGACGGCTACACCACCTTCCGCAGCGCCACAGTCGCTGTGAACGGGAAG GGGTTCATGGCGCGGGACGTGACGTTCGAGAACACGGCGGGGCCGTCGAAGCACCAGGCG GTGGCGCTCCGGTGCGACTCCGACCTCTCCGTCTTCTACCGCTGCGGGTTCGAGGGCTAC CAGGACACGCTGTACGCGCACTCGCTCCGCCAGTTCTACCGCGACTGCCGCGTCTCCGGC ACCGTCGACTTCGTCTTCGGCAACGCCGCCGCCGTGTTCCAGAACTGCACCCTCGCCGCG CGCCTCCCGCTCCCCGACCAGAAGAACTCCGTCACCGCGCAGGGCCGCCTCGACGGCAAC ATGACCACCGGCTTCGCCTTCCAGTTCTGCAACGTCACCGCCGACGACGACCTCCAGCGC GCGCTCGCCGGCGGCGGCAACCAGAGCTCCGCCGCGGCGGTGACGCAGACGTACCTCGGC CGGCCGTGGAAGCAGTACTCCAGGGTGGTGTTCATGCAGTCGTACATCGGCGCCGTGGTG CGCCCCGAGGGGTGGCTGGCGTGGGACGGACAGTTCGCGCTCGACACGCTCTACTACGGC GAGTACATGAACACCGGGCCCGGCGCCGGCGTCGGCGGCAGGGTCAAGTGGCCGGGGTTC CACGTCATGACGAGCCCCGCCCAGGCCGGCAACTTCACCGTCGCTCAGTTCATCGAGGGC AACATGTGGCTGCCGCCAACCGGCGTCAAGTACACCGCCGGCCTCACGTCTTGA

Peptide Sequence

PEP ID	Os08t0450100-01
PEP Infomation	pep chromosome:IRGSP-1.0:8:21978068:21981556:1 gene:Os08g0450100 transcript:Os08t0450100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 25 description:Similar to Pectinesterase (EC 3.1.1.11) (Fragment). (Os08t0450100-01)
Sequence	MASMCSRSIPQLILLLSLTVFLLANAHPMAPPSPPRKAAAPPTAAKGVTGISPVLVSTLR ETLDAIKNVASIISSFPIGGILGGGDLRLSSAIADCLDLLDLSSDELSWSMSTTSSSSYQ PTNAGAATSSHVGTGDARSDLRSWLGGALSNQDTCKEGLDDTGSVLGSLVGTALQTVTSL LTDGLGQVAAGEASIAWSSSRRGLAEGGGAPHWLGARERRLLQMPLGPGGMPVDAVVAKD GSGNYTTVSAAVDAAPTESASRYVIYVKKGVYKETVDIKKKKWNLMLVGDGMGVTVISGH RNYVDGYTTFRSATVAVNGKGFMARDVTFENTAGPSKHQAVALRCDSDLSVFYRCGFEGY QDTLYAHSLRQFYRDCRVSGTVDFVFGNAAAVFQNCTLAARLPLPDQKNSVTAQGRLDGN MTTGFAFQFCNVTADDDLQRALAGGGNQSSAAAVTQTYLGRPWKQYSRVVFMQSYIGAVV RPEGWLAWDGQFALDTLYYGEYMNTGPGAGVGGRVKWPGFHVMTSPAQAGNFTVAQFIEG NMWLPPTGVKYTAGLTS

Transcript Sequence

Transcript ID	Os08t0450100-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:21978068:21981556:1 gene:Os08g0450100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 25 description:Similar to Pectinesterase (EC 3.1.1.11) (Fragment). (Os08t0450100-01)
Sequence	AAAGCACACGTACAGCTACACTTTGTCACTAGCTAAGCTAGCAAGTGCAACTGTGCAAGC CATGGCGTCGATGTGTTCGAGGTCGATACCCCAGCTCATCCTCCTCCTCTCCCTGACCGT CTTCCTCCTCGCCAATGCGCATCCCATGGCCCCGCCATCGCCGCCGCGGAAGGCGGCCGC GCCTCCGACGGCGGCGAAGGGGGTGACCGGCATTTCGCCGGTGCTCGTCTCCACGCTGCG CGAGACGCTGGACGCGATCAAGAACGTCGCGTCCATCATCTCGTCGTTCCCCATCGGCGG CATCCTCGGTGGCGGCGACCTCCGCCTCTCCTCCGCCATCGCCGACTGCCTCGACCTGCT CGACCTGTCCTCCGACGAGCTGTCCTGGTCGATGTCCACCACGTCGTCGTCGTCCTACCA GCCCACCAACGCCGGCGCCGCCACGTCGTCCCACGTCGGCACCGGTGACGCTCGCTCCGA CCTCCGGTCGTGGCTGGGCGGCGCGCTGAGCAACCAGGACACCTGCAAGGAGGGCCTCGA CGACACCGGCTCCGTGCTCGGCTCGCTCGTCGGCACCGCCCTCCAGACCGTCACGTCGCT CCTCACCGACGGCCTCGGCCAGGTGGCCGCCGGCGAGGCCTCGATCGCGTGGTCGTCGTC CCGCCGCGGCCTCGCCGAGGGCGGCGGCGCCCCGCACTGGCTGGGAGCCCGGGAACGCCG GCTGCTGCAGATGCCGTTGGGCCCCGGTGGCATGCCGGTGGACGCCGTGGTCGCCAAGGA CGGGAGCGGCAACTACACGACGGTGAGCGCGGCCGTGGACGCGGCGCCGACGGAGAGCGC GAGCCGGTACGTGATCTACGTGAAAAAGGGCGTGTACAAGGAGACGGTGGACATCAAGAA GAAGAAGTGGAACCTGATGCTGGTCGGCGACGGCATGGGCGTGACCGTCATCTCCGGCCA CCGGAACTACGTCGACGGCTACACCACCTTCCGCAGCGCCACAGTCGCTGTGAACGGGAA GGGGTTCATGGCGCGGGACGTGACGTTCGAGAACACGGCGGGGCCGTCGAAGCACCAGGC GGTGGCGCTCCGGTGCGACTCCGACCTCTCCGTCTTCTACCGCTGCGGGTTCGAGGGCTA CCAGGACACGCTGTACGCGCACTCGCTCCGCCAGTTCTACCGCGACTGCCGCGTCTCCGG CACCGTCGACTTCGTCTTCGGCAACGCCGCCGCCGTGTTCCAGAACTGCACCCTCGCCGC GCGCCTCCCGCTCCCCGACCAGAAGAACTCCGTCACCGCGCAGGGCCGCCTCGACGGCAA CATGACCACCGGCTTCGCCTTCCAGTTCTGCAACGTCACCGCCGACGACGACCTCCAGCG CGCGCTCGCCGGCGGCGGCAACCAGAGCTCCGCCGCGGCGGTGACGCAGACGTACCTCGG CCGGCCGTGGAAGCAGTACTCCAGGGTGGTGTTCATGCAGTCGTACATCGGCGCCGTGGT GCGCCCCGAGGGGTGGCTGGCGTGGGACGGACAGTTCGCGCTCGACACGCTCTACTACGG CGAGTACATGAACACCGGGCCCGGCGCCGGCGTCGGCGGCAGGGTCAAGTGGCCGGGGTT CCACGTCATGACGAGCCCCGCCCAGGCCGGCAACTTCACCGTCGCTCAGTTCATCGAGGG CAACATGTGGCTGCCGCCAACCGGCGTCAAGTACACCGCCGGCCTCACGTCTTGATCACC AATTCACCATCGAGTACGTGCTTCTTGTGTGCGACAGTAGTACAGCACATGATCATACTA CACTTTACACTACGTTGGAGGGAGGTTTAATTAAGGATCTGGTGTATAAAATCTTTAGGA ATTATGGCATTCTGGGAGCTATTTAGCTGTTTAATTGGTGGTTAATGGAACAAGTTTGCC TTT