Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0448000-01
CDS Infomation	cds chromosome:IRGSP-1.0:8:21873076:21875497:-1 gene:Os08g0448000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:4-COUMARATE:COENZYME A LIGASE 5 description:4-coumarate:coenzyme A ligase, Lignin biosynthesis, Defense against wounding (Os08t0448000-01)
Sequence	ATGGGTTCGTTGCCGGAGCAGTTCGTCTTCCGCTCGAGGCTCCCCGACATCGCCATCCCG GACCACCTCCCGCTGCACGACTACGTGTTCGAGCGCCTCGCCGACCGCCGCGACCGGGCA TGCCTTATCGATGGCGCCACGGGGGAGACGCTCTCGTTCGGCGACGTCGACGCGCTGTCG CGCCGCGTGGCGGCTGGGTTGAGCTCGATTGGTGTTTGCCATGGTAGTACCGTGATGCTG CTGCTGCCGAACTCCGTCGAGTTCGCGGTGGCGTTCCTCGCGTCGTCACGGCTCGGGGCG GTCACCACCACGGCCAACCCGCTGCACACCCCGCCGGAGATCGCCAAGCAGGTGGCGGCG TCCGGCGCGACGGTGGTGGTCACCGAGCCGGCGTTCGTCGCCAAGGTGAGCGGCCTCGCG GGCGTGACCGTCGTCGCCACCGGGGGCGGCGCCGAGAGGTGCGCGTCGTTCGCGGGCCTC GCCGCCGCCGACGGCTCGGCGCTGCCGGAGGTCGCCATCGACGTCGCCAACGACGCCGTG GCGCTGCCCTACTCGTCGGGCACGACGGGGCTCCCCAAGGGGGTGATGCTGTCGCACCGC GGGCTGGTGACCAGCGTGGCGCAGCTCGTCGACGGCGAGAACCCGAACCTCCACCTCCGG GAGGACGACGTGGTGCTCTGCGTGCTCCCCATGTTCCACGTCTACTCCCTCCACTCCATC CTCCTCTGCGGGATGCGCGCCGGCGCCGCCATCGTGGTCATGAAGCGGTTCGACACCGTC AAGATGCTGCAGCTGGTGGAGCGCCACGGCGTCACCATCGCGCCGCTCGTCCCTCCCATC GTCGTCGAGATGGCCAAGAGCGACGCCCTCGACCGCCACGACCTCTCCTCCATCCGCATG GTCATCTCCGGCGCCGCCCCCATGGGCAAGGAGCTTCAGGACATCGTCCACGCCAAGCTC CCCAACGCCGTCCTCGGACAGGGGTACGGGATGACGGAGGCAGGGCCGGTGCTATCAATG TGCATGGCGTTCGCGAAGGAGCCGACGCCGGTGAAGTCCGGCGCGTGCGGCACGGTGGTG CGGAACGCCGAGCTGAAGATCGTCGACCCGGACACCGGCTTGTCACTCCCGCGCAACCAG CCGGGGGAGATTTGCATCAGGGGAAAACAAATCATGAAAGGATACCTGAACAACCCGGAG GCGACCGAGAAGACGATCGACAAGGACGGGTGGCTGCACACTGGCGACATCGGCTTCGTC GACGACGACGACGAGATCTTCATCGTGGACCGGCTCAAGGAGCTCATCAAGTACAAGGGC TTCCAGGTCGCCCCCGCCGAGCTCGAGGCCATGCTCATCGCCCACGCCGCCGTCGCCGAC GCCGCCGTCGTCCCAATGAAGGACGATTCCTGCGGCGAGATCCCAGTGGCGTTCGTCGTC GCACGCGACGGCTCGGGGATCACCGACGACGAGATCAAGCAGTACGTCGCAAAGCAGGTG GTGTTCTACAAGAGGCTGCACAAGATCTTCTTCGTGGACGCAATCCCGAAGGCGCCGTCG GGAAAGATTTTGAGGAAGGATCTGAGAGCAAAGTTGGCTGCTGGAATTCCGGCGTGCTGA

Peptide Sequence

PEP ID	Os08t0448000-01
PEP Infomation	pep chromosome:IRGSP-1.0:8:21873076:21875497:-1 gene:Os08g0448000 transcript:Os08t0448000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:4-COUMARATE:COENZYME A LIGASE 5 description:4-coumarate:coenzyme A ligase, Lignin biosynthesis, Defense against wounding (Os08t0448000-01)
Sequence	MGSLPEQFVFRSRLPDIAIPDHLPLHDYVFERLADRRDRACLIDGATGETLSFGDVDALS RRVAAGLSSIGVCHGSTVMLLLPNSVEFAVAFLASSRLGAVTTTANPLHTPPEIAKQVAA SGATVVVTEPAFVAKVSGLAGVTVVATGGGAERCASFAGLAAADGSALPEVAIDVANDAV ALPYSSGTTGLPKGVMLSHRGLVTSVAQLVDGENPNLHLREDDVVLCVLPMFHVYSLHSI LLCGMRAGAAIVVMKRFDTVKMLQLVERHGVTIAPLVPPIVVEMAKSDALDRHDLSSIRM VISGAAPMGKELQDIVHAKLPNAVLGQGYGMTEAGPVLSMCMAFAKEPTPVKSGACGTVV RNAELKIVDPDTGLSLPRNQPGEICIRGKQIMKGYLNNPEATEKTIDKDGWLHTGDIGFV DDDDEIFIVDRLKELIKYKGFQVAPAELEAMLIAHAAVADAAVVPMKDDSCGEIPVAFVV ARDGSGITDDEIKQYVAKQVVFYKRLHKIFFVDAIPKAPSGKILRKDLRAKLAAGIPAC

Transcript Sequence

Transcript ID	Os08t0448000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:21873076:21875497:-1 gene:Os08g0448000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:4-COUMARATE:COENZYME A LIGASE 5 description:4-coumarate:coenzyme A ligase, Lignin biosynthesis, Defense against wounding (Os08t0448000-01)
Sequence	AGGAATCGGTAGTTGTCATCACGCGCACTTCCATTCCGCTCACCTACCCACCGGAGAAGA GGTAGTCGCCGCCGCCGCCGCTGTCGCCGTCGCCGGAGAAGAAGAATGGGTTCGTTGCCG GAGCAGTTCGTCTTCCGCTCGAGGCTCCCCGACATCGCCATCCCGGACCACCTCCCGCTG CACGACTACGTGTTCGAGCGCCTCGCCGACCGCCGCGACCGGGCATGCCTTATCGATGGC GCCACGGGGGAGACGCTCTCGTTCGGCGACGTCGACGCGCTGTCGCGCCGCGTGGCGGCT GGGTTGAGCTCGATTGGTGTTTGCCATGGTAGTACCGTGATGCTGCTGCTGCCGAACTCC GTCGAGTTCGCGGTGGCGTTCCTCGCGTCGTCACGGCTCGGGGCGGTCACCACCACGGCC AACCCGCTGCACACCCCGCCGGAGATCGCCAAGCAGGTGGCGGCGTCCGGCGCGACGGTG GTGGTCACCGAGCCGGCGTTCGTCGCCAAGGTGAGCGGCCTCGCGGGCGTGACCGTCGTC GCCACCGGGGGCGGCGCCGAGAGGTGCGCGTCGTTCGCGGGCCTCGCCGCCGCCGACGGC TCGGCGCTGCCGGAGGTCGCCATCGACGTCGCCAACGACGCCGTGGCGCTGCCCTACTCG TCGGGCACGACGGGGCTCCCCAAGGGGGTGATGCTGTCGCACCGCGGGCTGGTGACCAGC GTGGCGCAGCTCGTCGACGGCGAGAACCCGAACCTCCACCTCCGGGAGGACGACGTGGTG CTCTGCGTGCTCCCCATGTTCCACGTCTACTCCCTCCACTCCATCCTCCTCTGCGGGATG CGCGCCGGCGCCGCCATCGTGGTCATGAAGCGGTTCGACACCGTCAAGATGCTGCAGCTG GTGGAGCGCCACGGCGTCACCATCGCGCCGCTCGTCCCTCCCATCGTCGTCGAGATGGCC AAGAGCGACGCCCTCGACCGCCACGACCTCTCCTCCATCCGCATGGTCATCTCCGGCGCC GCCCCCATGGGCAAGGAGCTTCAGGACATCGTCCACGCCAAGCTCCCCAACGCCGTCCTC GGACAGGGGTACGGGATGACGGAGGCAGGGCCGGTGCTATCAATGTGCATGGCGTTCGCG AAGGAGCCGACGCCGGTGAAGTCCGGCGCGTGCGGCACGGTGGTGCGGAACGCCGAGCTG AAGATCGTCGACCCGGACACCGGCTTGTCACTCCCGCGCAACCAGCCGGGGGAGATTTGC ATCAGGGGAAAACAAATCATGAAAGGATACCTGAACAACCCGGAGGCGACCGAGAAGACG ATCGACAAGGACGGGTGGCTGCACACTGGCGACATCGGCTTCGTCGACGACGACGACGAG ATCTTCATCGTGGACCGGCTCAAGGAGCTCATCAAGTACAAGGGCTTCCAGGTCGCCCCC GCCGAGCTCGAGGCCATGCTCATCGCCCACGCCGCCGTCGCCGACGCCGCCGTCGTCCCA ATGAAGGACGATTCCTGCGGCGAGATCCCAGTGGCGTTCGTCGTCGCACGCGACGGCTCG GGGATCACCGACGACGAGATCAAGCAGTACGTCGCAAAGCAGGTGGTGTTCTACAAGAGG CTGCACAAGATCTTCTTCGTGGACGCAATCCCGAAGGCGCCGTCGGGAAAGATTTTGAGG AAGGATCTGAGAGCAAAGTTGGCTGCTGGAATTCCGGCGTGCTGATGAAACTGGCATGAG CTAGCTTGCCTGAGATATCCAGCTATTGTTTGGTTTTTGTTTTGATCATACTTAAAAAGA TATAGTGAAATGTAAACATGATGTAGTCAGCAATGTAAAAGGAACACGCCCTCTGGATAT ACATGAAAGTTTGAGAGGTGATCTCATCGGTCATCAGTAACACAAATTTGTCGCAAAGAT TTTTATTTTTTGTTGTTGCACCCGTGTAAAAGTGAATTGATGCCATTTTATTTGTTGG