Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0441600-01
CDS Infomation

cds chromosome:IRGSP-1.0:8:21523475:21525761:1 gene:Os08g0441600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Chorismate mutase CM2 (EC 5.4.99.5) (Chorimate mutase). (Os08t0441600-01)
Sequence

ATGGCGGCGGCGATGATTCTCTCCTGCAGGTATCTGCTCATCTGCAGCGCGACGCTTGCG
CTGCTGCTGCTGCGACTGTGCAGCGGGCTGAGCCTGGACACGGTGAGGGAGTTCCTCACG
AGGGAGGAGGACACCGTCGTGTTCGGCCTCATCGAGCGGGCCAAGCACCCGCGCAACACG
CCGGCCTACGACCCCGGCTACCTCGCCGGCGGCGGCCATGGCCACGACGCCTCTTTCGCC
GAGATGTTCGTGCGCGAGTCCGAGGCGGTTCAGGCCAAGGCAGGAAGGTACCAAAGCCTG
CAGGAGATTCCTTTCTTCCCTTTCAGAGTGCCTTTCACATTGGCACCTCCATATAACTTC
ACAACCGAGCTGTATTCTGCAGCCGCATTAGTTAATGTGAATGATGCCATATGGAGCATG
TATTTCAATGAGTTGCTCCCTCTCCTGGCCAAGAATGGCGATGATGGCAACTATGCTGCA
ACTGTTTCATCAGATCTTGTATGTCTGCAGGCACTCTCAAGAAGGATCAACTATGGGAGG
TATGTGGCAGAAGTGAAGTTCATAGGCGACCAGCAGAACTACACAACTTTAATTCGTAAC
AAGGACACGGATGCCCTGATGAAATTGTTGACATCTGAAGCCCAGGAAGATGTGGTGAAG
AGAAGGGTTCAGAAGAAGGCCATGGTGTTCGGTCAAAATGTGACATTGGATGGACCAGTT
GAAACTGGCAACAGCAACAGTAGCCAAACAAGTTTCAAAGTTGATCCTTCATTAGTGTAT
AAACTGTATGACAAATGGGTGATTCCATTGACTAAACAAGTGGAGGTCGAGTACCTGCTC
CATCGTCTTGATTGA

Peptide Sequence

PEP ID

Os08t0441600-01
PEP Infomation

pep chromosome:IRGSP-1.0:8:21523475:21525761:1 gene:Os08g0441600 transcript:Os08t0441600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Chorismate mutase CM2 (EC 5.4.99.5) (Chorimate mutase). (Os08t0441600-01)
Sequence

MAAAMILSCRYLLICSATLALLLLRLCSGLSLDTVREFLTREEDTVVFGLIERAKHPRNT
PAYDPGYLAGGGHGHDASFAEMFVRESEAVQAKAGRYQSLQEIPFFPFRVPFTLAPPYNF
TTELYSAAALVNVNDAIWSMYFNELLPLLAKNGDDGNYAATVSSDLVCLQALSRRINYGR
YVAEVKFIGDQQNYTTLIRNKDTDALMKLLTSEAQEDVVKRRVQKKAMVFGQNVTLDGPV
ETGNSNSSQTSFKVDPSLVYKLYDKWVIPLTKQVEVEYLLHRLD

Transcript Sequence

Transcript ID

Os08t0441600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:21523475:21525761:1 gene:Os08g0441600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Chorismate mutase CM2 (EC 5.4.99.5) (Chorimate mutase). (Os08t0441600-01)
Sequence

ATCTCATTGTTCTTCTTCTTTCTCCGTCTCTCTCTCTCTCTCTCTCGCTGTCTTTCCGAG
CAGCAAGCAGCAATGGCGGCGGCGATGATTCTCTCCTGCAGGTATCTGCTCATCTGCAGC
GCGACGCTTGCGCTGCTGCTGCTGCGACTGTGCAGCGGGCTGAGCCTGGACACGGTGAGG
GAGTTCCTCACGAGGGAGGAGGACACCGTCGTGTTCGGCCTCATCGAGCGGGCCAAGCAC
CCGCGCAACACGCCGGCCTACGACCCCGGCTACCTCGCCGGCGGCGGCCATGGCCACGAC
GCCTCTTTCGCCGAGATGTTCGTGCGCGAGTCCGAGGCGGTTCAGGCCAAGGCAGGAAGG
TACCAAAGCCTGCAGGAGATTCCTTTCTTCCCTTTCAGAGTGCCTTTCACATTGGCACCT
CCATATAACTTCACAACCGAGCTGTATTCTGCAGCCGCATTAGTTAATGTGAATGATGCC
ATATGGAGCATGTATTTCAATGAGTTGCTCCCTCTCCTGGCCAAGAATGGCGATGATGGC
AACTATGCTGCAACTGTTTCATCAGATCTTGTATGTCTGCAGGCACTCTCAAGAAGGATC
AACTATGGGAGGTATGTGGCAGAAGTGAAGTTCATAGGCGACCAGCAGAACTACACAACT
TTAATTCGTAACAAGGACACGGATGCCCTGATGAAATTGTTGACATCTGAAGCCCAGGAA
GATGTGGTGAAGAGAAGGGTTCAGAAGAAGGCCATGGTGTTCGGTCAAAATGTGACATTG
GATGGACCAGTTGAAACTGGCAACAGCAACAGTAGCCAAACAAGTTTCAAAGTTGATCCT
TCATTAGTGTATAAACTGTATGACAAATGGGTGATTCCATTGACTAAACAAGTGGAGGTC
GAGTACCTGCTCCATCGTCTTGATTGAATCAAGCATTTATCTAGCTAACCTATTTGTTCA
AAGTGTAACTAAGTTGTCACATGAAAGATTGAAATGATACACCAATAATAACATGCAGCA
AGGTCTGCAGATTGTTCAGT