Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0439100-01
CDS Infomation

cds chromosome:IRGSP-1.0:8:21337639:21352748:1 gene:Os08g0439100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1336 domain containing protein. (Os08t0439100-01)
Sequence

ATGGCCACGATCACCTTGAAGCCGCCGGCGACGGCGGCGGCGGCGGGAGGGGAGGTGTCC
GAGGTGGAGCTCTCGGAGGCGGGATCGCCGGATGTCGGCAGCCAGAGCAGCGGGAGCGGT
GGGAGCGGGCGGAGCACGGCGGGGTCCTCCGGGTGGGTGTACCACCTCGGCGTGAACTCC
ATCGGCCACGAGTACCGCCACCTCCGGTTCCTCGTCATCCGCGGCAAGACGGTGGCCATG
TACAAGCGCGACCCGAGCAAGAACCCCGGAATCCAACCTATCCGAAAGGGTGTTGTAAGT
CACACTCTTATGGTGGAGGAGCTTGGTCGCCGGATTACTAGCCATGGGGAACTGTATGTC
TTGCGGTTTTACAATCGGTTGGATCAAACAAAGAAAGGAGAGATTGCATGTGGGGACCCC
GGTGAAGCTAGGAAATGGGTTGAAGCATTTGAGCAGGCAAAACAGCAGGCTGATTATGAC
CTGATGACGAGAGGGGTTAGTTGGAATAGATCCCAGAATGAAAACGAGCTTAATCTTGAT
GGGCATCGACCACGTGTAAGGAGATATGCACAAGGCTTGGGGAAACTTGTACGAATTGGT
AAAGGGCCAGAAAAGCTCTTGCGGCAGTCTTCAAATCTTCAAAGCCATGAGATAATTAAT
ACAAACTTTGGAGGCGATTCTGGAGATGCATTCGAAGCACACGAATGGAGATATGTTCGA
ACATTTAATGGTATAAGAATTTTTGAAGATATTGCAAACACAAAGGGTGGAAAAGGGGTA
CTTCTTAAGTCTGTTGGTGTGGTTGGGGCGAATCCTGATACTGTATTTGCAGTGGTTCTC
AGCTCTGATAAGCATAAGCGATATGAGTGGGATATGCTGACTGCCGATTTGGAATTGGTA
GAAACAATTGATGGATACTATGACGTGGTTTATGGAACCTATGAACCTAGATATTTAAGC
TGGTGGAAAACAAAGAAGGATTTTGTTTTTTCCAGACAATGGTTTCGTGGACAAGATGGG
GCATATACCATTTTGCAGATTCCTGCTTGTCACAAGAACAAACCTCCAAGGCATGGCTAC
GAGCGTACAAAAATCAATTCCTCAACATGGGAACTAAGAAGGTTGAACCCACCAGGATCA
TCAACTCCGAAATGCCTTGTTACTCATATGTTGGAAATGAGCCCAAGTTTTTGGGATAGA
TGGAAGAGAAGACATAACGAGAATTTTGACAGAAGTATTGCTTTTGCTTTGCTCAGCCAA
GTAGCAGGTCTAAGAGAATACTTTGCAGCAAATCCAGCTTTGACATCTGATTTGCCTTCA
ACAGTAGTGAAGCCCAAACAGTCTGATTCTTTGATCATCCAGAGTGAACTGGAAGATTCT
GAACTTAATGATGAATTCTATGATGCACTTGCTAGAGGCGAATCCTTTGAAGATGAGGAT
AGTGATGACGATGATGATATGATTCCTAAGGCTGGAAAAGTGAAGTTCAAGAATATTTCA
TGGGCTATCGCAGGTCTTGCTATGAAACCGACTAAAGCTTCGGTTGAGAAGAGTGAATTG
GTTACAAATTCAACTCCGGTAACTATTGATTCAAACCATTTCCATGGCACCCTTCGACGA
GCGAAAAGTGAGAATGACCCAAACTCTTGGAGTGAGCCTGGTGGAGAGAAGTTCATGATA
AGAGGAAAGACTTACCTGACAGATTACACTAAGGTTGTTGGAGGTGATCCCCTTCTAAAG
CTTATTGCTGTCGATTGGTTTAAGGCTGATGAGCGTTTTGATTCAGTTGCCTTACACCCC
AAGAGCCTCGTTCAGTCAGAAGCTGCAAAGAAGATTCCCTTCATACTGGTCATAAACTTG
CAGGTTCCAGCGAAGCCAAACTATAACTTGGTCATGTACTACGCAGCAGAAAGGCCCGTG
AATAAAGATTCTCTGTTGGGAAGATTCATTGATGGAACCGATGCGTTCCGAGATGCCAGA
TTTAAACTTATACCAAGCATTGTTGAGGGTTATTGGATGGTAAAACGTGCAGTTGGAACA
AAAGCTTGTCTTCTGGGAAAAGCAGTAACATGCAATTACCTTCGCCAGGATAACTTTCTA
GAGATAGATGTTGACATTGGTTCTTCATCCGTTGCACGGAGCATTATTGGTCTAGTCCTG
GGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAGGCAAAGGAAGAGAAA
GAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTAAATCGTGCGAATCCCGACTCTGCA
GTACCCATCTAA

Peptide Sequence

PEP ID

Os08t0439100-01
PEP Infomation

pep chromosome:IRGSP-1.0:8:21337639:21352748:1 gene:Os08g0439100 transcript:Os08t0439100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1336 domain containing protein. (Os08t0439100-01)
Sequence

MATITLKPPATAAAAGGEVSEVELSEAGSPDVGSQSSGSGGSGRSTAGSSGWVYHLGVNS
IGHEYRHLRFLVIRGKTVAMYKRDPSKNPGIQPIRKGVVSHTLMVEELGRRITSHGELYV
LRFYNRLDQTKKGEIACGDPGEARKWVEAFEQAKQQADYDLMTRGVSWNRSQNENELNLD
GHRPRVRRYAQGLGKLVRIGKGPEKLLRQSSNLQSHEIINTNFGGDSGDAFEAHEWRYVR
TFNGIRIFEDIANTKGGKGVLLKSVGVVGANPDTVFAVVLSSDKHKRYEWDMLTADLELV
ETIDGYYDVVYGTYEPRYLSWWKTKKDFVFSRQWFRGQDGAYTILQIPACHKNKPPRHGY
ERTKINSSTWELRRLNPPGSSTPKCLVTHMLEMSPSFWDRWKRRHNENFDRSIAFALLSQ
VAGLREYFAANPALTSDLPSTVVKPKQSDSLIIQSELEDSELNDEFYDALARGESFEDED
SDDDDDMIPKAGKVKFKNISWAIAGLAMKPTKASVEKSELVTNSTPVTIDSNHFHGTLRR
AKSENDPNSWSEPGGEKFMIRGKTYLTDYTKVVGGDPLLKLIAVDWFKADERFDSVALHP
KSLVQSEAAKKIPFILVINLQVPAKPNYNLVMYYAAERPVNKDSLLGRFIDGTDAFRDAR
FKLIPSIVEGYWMVKRAVGTKACLLGKAVTCNYLRQDNFLEIDVDIGSSSVARSIIGLVL
GYVTGLVVDLAILIEAKEEKELPEYILGTVRLNRANPDSAVPI

Transcript Sequence

Transcript ID

Os08t0439100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:21337639:21352748:1 gene:Os08g0439100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1336 domain containing protein. (Os08t0439100-01)
Sequence

AGTCTTCCAACTTTTTCCCCCATCGGATTGCGCCCCACGCTGTCGGCGATGGCCACGATC
ACCTTGAAGCCGCCGGCGACGGCGGCGGCGGCGGGAGGGGAGGTGTCCGAGGTGGAGCTC
TCGGAGGCGGGATCGCCGGATGTCGGCAGCCAGAGCAGCGGGAGCGGTGGGAGCGGGCGG
AGCACGGCGGGGTCCTCCGGGTGGGTGTACCACCTCGGCGTGAACTCCATCGGCCACGAG
TACCGCCACCTCCGGTTCCTCGTCATCCGCGGCAAGACGGTGGCCATGTACAAGCGCGAC
CCGAGCAAGAACCCCGGAATCCAACCTATCCGAAAGGGTGTTGTAAGTCACACTCTTATG
GTGGAGGAGCTTGGTCGCCGGATTACTAGCCATGGGGAACTGTATGTCTTGCGGTTTTAC
AATCGGTTGGATCAAACAAAGAAAGGAGAGATTGCATGTGGGGACCCCGGTGAAGCTAGG
AAATGGGTTGAAGCATTTGAGCAGGCAAAACAGCAGGCTGATTATGACCTGATGACGAGA
GGGGTTAGTTGGAATAGATCCCAGAATGAAAACGAGCTTAATCTTGATGGGCATCGACCA
CGTGTAAGGAGATATGCACAAGGCTTGGGGAAACTTGTACGAATTGGTAAAGGGCCAGAA
AAGCTCTTGCGGCAGTCTTCAAATCTTCAAAGCCATGAGATAATTAATACAAACTTTGGA
GGCGATTCTGGAGATGCATTCGAAGCACACGAATGGAGATATGTTCGAACATTTAATGGT
ATAAGAATTTTTGAAGATATTGCAAACACAAAGGGTGGAAAAGGGGTACTTCTTAAGTCT
GTTGGTGTGGTTGGGGCGAATCCTGATACTGTATTTGCAGTGGTTCTCAGCTCTGATAAG
CATAAGCGATATGAGTGGGATATGCTGACTGCCGATTTGGAATTGGTAGAAACAATTGAT
GGATACTATGACGTGGTTTATGGAACCTATGAACCTAGATATTTAAGCTGGTGGAAAACA
AAGAAGGATTTTGTTTTTTCCAGACAATGGTTTCGTGGACAAGATGGGGCATATACCATT
TTGCAGATTCCTGCTTGTCACAAGAACAAACCTCCAAGGCATGGCTACGAGCGTACAAAA
ATCAATTCCTCAACATGGGAACTAAGAAGGTTGAACCCACCAGGATCATCAACTCCGAAA
TGCCTTGTTACTCATATGTTGGAAATGAGCCCAAGTTTTTGGGATAGATGGAAGAGAAGA
CATAACGAGAATTTTGACAGAAGTATTGCTTTTGCTTTGCTCAGCCAAGTAGCAGGTCTA
AGAGAATACTTTGCAGCAAATCCAGCTTTGACATCTGATTTGCCTTCAACAGTAGTGAAG
CCCAAACAGTCTGATTCTTTGATCATCCAGAGTGAACTGGAAGATTCTGAACTTAATGAT
GAATTCTATGATGCACTTGCTAGAGGCGAATCCTTTGAAGATGAGGATAGTGATGACGAT
GATGATATGATTCCTAAGGCTGGAAAAGTGAAGTTCAAGAATATTTCATGGGCTATCGCA
GGTCTTGCTATGAAACCGACTAAAGCTTCGGTTGAGAAGAGTGAATTGGTTACAAATTCA
ACTCCGGTAACTATTGATTCAAACCATTTCCATGGCACCCTTCGACGAGCGAAAAGTGAG
AATGACCCAAACTCTTGGAGTGAGCCTGGTGGAGAGAAGTTCATGATAAGAGGAAAGACT
TACCTGACAGATTACACTAAGGTTGTTGGAGGTGATCCCCTTCTAAAGCTTATTGCTGTC
GATTGGTTTAAGGCTGATGAGCGTTTTGATTCAGTTGCCTTACACCCCAAGAGCCTCGTT
CAGTCAGAAGCTGCAAAGAAGATTCCCTTCATACTGGTCATAAACTTGCAGGTTCCAGCG
AAGCCAAACTATAACTTGGTCATGTACTACGCAGCAGAAAGGCCCGTGAATAAAGATTCT
CTGTTGGGAAGATTCATTGATGGAACCGATGCGTTCCGAGATGCCAGATTTAAACTTATA
CCAAGCATTGTTGAGGGTTATTGGATGGTAAAACGTGCAGTTGGAACAAAAGCTTGTCTT
CTGGGAAAAGCAGTAACATGCAATTACCTTCGCCAGGATAACTTTCTAGAGATAGATGTT
GACATTGGTTCTTCATCCGTTGCACGGAGCATTATTGGTCTAGTCCTGGGATATGTCACA
GGCCTTGTTGTTGATCTTGCTATTCTAATTGAGGCAAAGGAAGAGAAAGAGCTGCCTGAA
TACATTCTTGGCACAGTTCGCCTAAATCGTGCGAATCCCGACTCTGCAGTACCCATCTAA
AGTCAGTTCTATATTTCTTGGCTCAATTATCCTTTTCTCCCACAGAAAAGGTGGGATTTT
TTTTGGCAGATCTGCTTTTCTGCAATTTTCTTTATTATCTGTGGTTGCATACCATTTGTA
AAAAAGAAGGTAGCATCAATTTCACATGTACAGATTACCTATTACAGACATGATGCTGTC
GTACATACAAATAGAGGAAATGAGCGTTTATTTATCTCCAGTTTGGGGACAGC