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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0436200-01
CDS Infomation

cds chromosome:IRGSP-1.0:8:21194863:21200130:1 gene:Os08g0436200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os08t0436200-01)
Sequence

ATGAAGGATCATCTAATGCTTAATGTTAGCAACCTTCCCGAGTCTGTTGAGGCGACCGAG
GCAGCCATGAATCTGCCTTCCGGGGGAGTTTCTCTACCACCGTTGTCTACAACTCATACA
CTTTTGTCAGTTCGGGAAAGCATGGGTGCTGAGGAAGAGCCTCTTATTCAGACAGTAGAA
TGTCGTATTTGCCAAGAGGAGGATAACATCAGCAACCTTGAGAGTCCATGTGCTTGCACT
GGAAGTCTAAAGTATGCTCATCGGGCTTGCGTGCAGAGATGGTGCGATGAGAAAGGAGAT
TTGACATGTGAAATTTGCCATGAGCCATACAAACACGGGTACACTGCACTTCCTAGAGCT
CATCCTGATGAGACAACCATTGATATAAGTGGTGGTTGGACCATTACCGGCACAGCATTT
GATTTGCATGATCCAAGGATTATTGCAATGGCACAAAATCACATAATGGAAGCTGACTAT
GATGATTATTCAGTAACAAATGCGAGCTCTGCTGCCTTTTGCCGCTCTGCTGCGCTTATT
TTAATGGCTCTGTTAGTGTTGAGGCATGTGTTGGTACTAACTGATGAAGATGAAGACGAC
GCTTCTTCAATGTTTTTGCTTTTTCTACTACGAGTCACCGGGTTTCTGCTACCATTCTAC
ATCATGGCTTGGGCAATCAATATCTTACAGGGCCGAAGGCGGAGGCAGGTAGCGGCTGCT
CTAGCTGCAACTGAGGTGGCATTCATTCTACAGTCAGGACAAAGAAGGGGCATGAATTTC
ACCATCGCACCAGATTCCCCTGCCACACCTCAGCATGAGCCTATCCCTTGA

Peptide Sequence

PEP ID

Os08t0436200-01
PEP Infomation

pep chromosome:IRGSP-1.0:8:21194863:21200130:1 gene:Os08g0436200 transcript:Os08t0436200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os08t0436200-01)
Sequence

MKDHLMLNVSNLPESVEATEAAMNLPSGGVSLPPLSTTHTLLSVRESMGAEEEPLIQTVE
CRICQEEDNISNLESPCACTGSLKYAHRACVQRWCDEKGDLTCEICHEPYKHGYTALPRA
HPDETTIDISGGWTITGTAFDLHDPRIIAMAQNHIMEADYDDYSVTNASSAAFCRSAALI
LMALLVLRHVLVLTDEDEDDASSMFLLFLLRVTGFLLPFYIMAWAINILQGRRRRQVAAA
LAATEVAFILQSGQRRGMNFTIAPDSPATPQHEPIP

Transcript Sequence

Transcript ID

Os08t0436200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:21194863:21200130:1 gene:Os08g0436200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os08t0436200-01)
Sequence

ACGAGGACGAGAGAACGAGGAGGCACGCACGAGAGCTCCTCCTCCCACCCAAGCACGGTG
GAGCTCATGTTCTCGGTGCCTGTTCTCAATCCTAATAAAGTTGGCTGACGTTGCATCGCC
GGCCTGGCAAAAAATCAGTGCTTGTTTTTGTCTTGAAGCTTCCACGGTTCCACTAATAAC
TCAAGTTCCTTCTTTCCTGAGAACAGCCCATTTCAGGAGGGATCTTAGCAGAGTACGTCA
ATTTTATTATTCAATACTGCTTGTGGATAGAATTACTCTGTTGGCAAGGTTCTTTGTTTT
AAGTAACAAATGAAGGATCATCTAATGCTTAATGTTAGCAACCTTCCCGAGTCTGTTGAG
GCGACCGAGGCAGCCATGAATCTGCCTTCCGGGGGAGTTTCTCTACCACCGTTGTCTACA
ACTCATACACTTTTGTCAGTTCGGGAAAGCATGGGTGCTGAGGAAGAGCCTCTTATTCAG
ACAGTAGAATGTCGTATTTGCCAAGAGGAGGATAACATCAGCAACCTTGAGAGTCCATGT
GCTTGCACTGGAAGTCTAAAGTATGCTCATCGGGCTTGCGTGCAGAGATGGTGCGATGAG
AAAGGAGATTTGACATGTGAAATTTGCCATGAGCCATACAAACACGGGTACACTGCACTT
CCTAGAGCTCATCCTGATGAGACAACCATTGATATAAGTGGTGGTTGGACCATTACCGGC
ACAGCATTTGATTTGCATGATCCAAGGATTATTGCAATGGCACAAAATCACATAATGGAA
GCTGACTATGATGATTATTCAGTAACAAATGCGAGCTCTGCTGCCTTTTGCCGCTCTGCT
GCGCTTATTTTAATGGCTCTGTTAGTGTTGAGGCATGTGTTGGTACTAACTGATGAAGAT
GAAGACGACGCTTCTTCAATGTTTTTGCTTTTTCTACTACGAGTCACCGGGTTTCTGCTA
CCATTCTACATCATGGCTTGGGCAATCAATATCTTACAGGGCCGAAGGCGGAGGCAGGTA
GCGGCTGCTCTAGCTGCAACTGAGGTGGCATTCATTCTACAGTCAGGACAAAGAAGGGGC
ATGAATTTCACCATCGCACCAGATTCCCCTGCCACACCTCAGCATGAGCCTATCCCTTGA
ATTAATGTTGTCAGCATCACTCAAGTTCATGTGGCATTGTTTAGCTGATGACTTGACGAA
GAATTTGTTAATTGTGATTAATTAATTATTCAGCACAAGATGAGATGCAATGTCATCTCT
TATCAGATAGAATGTATTAATTCATGTATGTTTTGGTGTGTGTGTGTGTAAGAGGTGTCT
GTGATACTGAAGCCCCTTTTTTATGTATGTATGGTATGGGTTCTGTGTTCAGTGTCCTGC
GTATAGGTAGAGAGCACGGAGAAACACTTTCAGTAGGTTCCTAATTTTTGTCTCCCAGAA
ATCCTTGATTTTATTTC