Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os08t0434000-01
CDS Infomation	cds chromosome:IRGSP-1.0:8:21043003:21047252:1 gene:Os08g0434000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os08t0434000-01)
Sequence	ATGGCATCGCATCTCACGCGCGCCCTCCTCTCCTCCCCGCCGTCCTCCGCCGCCGCCGCC GCCACCGCCTCTGCCGCCGCCGCGCTCCTATCCTCCACGTCGCCGCTCCCCGCGGCGCGC TTCCTCCAGCTCCACGCGCACCTCCTCCGCACGGGCCTCCTCCTCCTCCCACTCGCCCCG ACCGCGGCCTCCGCCTTCCTCTCCCTCGCCGCCGCCTCCCTCCCGTCGCACCGGGCGCTG CCGGTCCTCCTCCACCACCTCGCCCTCGCCCCGGAGACCCTCCCCTCCACATTTCGCCTC AACGCCATCCTCCGCTCCCTCCGCGGCCCCGACGCGCTCCGCTTCCTCCGCCGCGCCCGC GCGCTCGGCCGCCGCGGGAACGCCTTCTCCCTGTCCATCGTCCTCGGCCACTGCCGCGCC CTCGCCCACGCGCGCCAGCTTCACGCCAACGTCGTCGCCGAGGGGCACTCCCCGGACGCC CTCCTGGCCACCTCGCTGGTGAGTTCCTATGCTGCCTGCGGCGACGGGGACAGCGCTCGC AAGGTGTTCGATGAAATGCCGGTCAGGGACACTATCGCGTGGAACGTTCTCATCACTTGT TATACCAGGAACCGGCGGACGAAGGATGCTCTCAAGCTTTTCGATGCGATGAGGGGTGGG GAGAATGGGGCAGAACCAGACGATGTCACCTGCATTCTCCTTCTCCAAGCGTGCACGAGC TTGGGTGCGCTCGATTTCGGGGAGAAGGTCTGGGAGTATGCGGTGGATCATGGATATGGG GGTGAGTTGAAGGTGCGTAACTCGTTGATTACAATGTACACAAAGTGCGGCTGTGTGGAC AAGGCATACCAGGTGTTTTGTGAGACTCCTAAGAAGAGTGTGGTCACATGGAGTGCAATG ATCTCGGGTTTGGCATCTAATGGTTTTGGGAAGGATGCTATATCTGCATTTGAGGAGATG GGTAGATCAGGCGTTGCTCCTGATGAACAGACATTTACTGGTGTGCTCTCAGCGTGTAGT CATAGCGGGCTGGTTGATGAGGGGTTCAAGTTTTTTGATATTATGTGTTACGAATATCAG TTAAAGCCGAATGTTCATCATTATGGATGCATGGTAGACCTCATGGGCCGTGCTGGCTTG CTTGATCAGGCATATGAACTGGTGGTAAAAGACATGAGGGTAGCACCAGATGCAACGATT TGGCGAACCCTTCTTGGTGCATGCAGAATTCATGGACATATTGACCTTGGAGAGCGTGTA ATCAACCATCTAATTGAACTGAAAGCGCAACAAGCTGGGGATTATGTTCTATTGCTTAAT ACTTATGCAGCAGTTGAAGATTGGGGAAAGGTAGCAGAGGTCAGGAAGTTGATGAAGGAG AAAGGGATCCAAACTACTCCTGGCTGCACGACAGTAGAACTGAACGGCGAGATCCATGAA TTTATTGCAGCTGATGCTTCACATCCAAGAAAGGCAGAGATTTATGAAAAGCTTGATGAG ATAAACAAACATCTTAGAATAGCTGGTTATGTTCCTAACGTGTCGTCGGAGTTGCATGAT TTGGATTCTGAGGGGAAGGAATGCGCCCTCGCATATCACAGTGAAAAGCTAGCAATTGCT TTTGCTCTTCTTGTGACACCACAGCATAGACCAATAAGGCTTGCTAAGAATCTTCGTGTT TGTGTAGACTGCCACAATTTCACAAAGGTATTCTCTGGTGTATATCATCGCTTAGTGATT GTCAGAGACAGAACCCGATTCCATCATTTCAAGGAATTCCAGTGTTCGTGTAATGATTAT TGGTAG

Peptide Sequence

PEP ID	Os08t0434000-01
PEP Infomation	pep chromosome:IRGSP-1.0:8:21043003:21047252:1 gene:Os08g0434000 transcript:Os08t0434000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os08t0434000-01)
Sequence	MASHLTRALLSSPPSSAAAAATASAAAALLSSTSPLPAARFLQLHAHLLRTGLLLLPLAP TAASAFLSLAAASLPSHRALPVLLHHLALAPETLPSTFRLNAILRSLRGPDALRFLRRAR ALGRRGNAFSLSIVLGHCRALAHARQLHANVVAEGHSPDALLATSLVSSYAACGDGDSAR KVFDEMPVRDTIAWNVLITCYTRNRRTKDALKLFDAMRGGENGAEPDDVTCILLLQACTS LGALDFGEKVWEYAVDHGYGGELKVRNSLITMYTKCGCVDKAYQVFCETPKKSVVTWSAM ISGLASNGFGKDAISAFEEMGRSGVAPDEQTFTGVLSACSHSGLVDEGFKFFDIMCYEYQ LKPNVHHYGCMVDLMGRAGLLDQAYELVVKDMRVAPDATIWRTLLGACRIHGHIDLGERV INHLIELKAQQAGDYVLLLNTYAAVEDWGKVAEVRKLMKEKGIQTTPGCTTVELNGEIHE FIAADASHPRKAEIYEKLDEINKHLRIAGYVPNVSSELHDLDSEGKECALAYHSEKLAIA FALLVTPQHRPIRLAKNLRVCVDCHNFTKVFSGVYHRLVIVRDRTRFHHFKEFQCSCNDY W

Transcript Sequence

Transcript ID	Os08t0434000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:8:21043003:21047252:1 gene:Os08g0434000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os08t0434000-01)
Sequence	ATGGCATCGCATCTCACGCGCGCCCTCCTCTCCTCCCCGCCGTCCTCCGCCGCCGCCGCC GCCACCGCCTCTGCCGCCGCCGCGCTCCTATCCTCCACGTCGCCGCTCCCCGCGGCGCGC TTCCTCCAGCTCCACGCGCACCTCCTCCGCACGGGCCTCCTCCTCCTCCCACTCGCCCCG ACCGCGGCCTCCGCCTTCCTCTCCCTCGCCGCCGCCTCCCTCCCGTCGCACCGGGCGCTG CCGGTCCTCCTCCACCACCTCGCCCTCGCCCCGGAGACCCTCCCCTCCACATTTCGCCTC AACGCCATCCTCCGCTCCCTCCGCGGCCCCGACGCGCTCCGCTTCCTCCGCCGCGCCCGC GCGCTCGGCCGCCGCGGGAACGCCTTCTCCCTGTCCATCGTCCTCGGCCACTGCCGCGCC CTCGCCCACGCGCGCCAGCTTCACGCCAACGTCGTCGCCGAGGGGCACTCCCCGGACGCC CTCCTGGCCACCTCGCTGGTGAGTTCCTATGCTGCCTGCGGCGACGGGGACAGCGCTCGC AAGGTGTTCGATGAAATGCCGGTCAGGGACACTATCGCGTGGAACGTTCTCATCACTTGT TATACCAGGAACCGGCGGACGAAGGATGCTCTCAAGCTTTTCGATGCGATGAGGGGTGGG GAGAATGGGGCAGAACCAGACGATGTCACCTGCATTCTCCTTCTCCAAGCGTGCACGAGC TTGGGTGCGCTCGATTTCGGGGAGAAGGTCTGGGAGTATGCGGTGGATCATGGATATGGG GGTGAGTTGAAGGTGCGTAACTCGTTGATTACAATGTACACAAAGTGCGGCTGTGTGGAC AAGGCATACCAGGTGTTTTGTGAGACTCCTAAGAAGAGTGTGGTCACATGGAGTGCAATG ATCTCGGGTTTGGCATCTAATGGTTTTGGGAAGGATGCTATATCTGCATTTGAGGAGATG GGTAGATCAGGCGTTGCTCCTGATGAACAGACATTTACTGGTGTGCTCTCAGCGTGTAGT CATAGCGGGCTGGTTGATGAGGGGTTCAAGTTTTTTGATATTATGTGTTACGAATATCAG TTAAAGCCGAATGTTCATCATTATGGATGCATGGTAGACCTCATGGGCCGTGCTGGCTTG CTTGATCAGGCATATGAACTGGTGGTAAAAGACATGAGGGTAGCACCAGATGCAACGATT TGGCGAACCCTTCTTGGTGCATGCAGAATTCATGGACATATTGACCTTGGAGAGCGTGTA ATCAACCATCTAATTGAACTGAAAGCGCAACAAGCTGGGGATTATGTTCTATTGCTTAAT ACTTATGCAGCAGTTGAAGATTGGGGAAAGGTAGCAGAGGTCAGGAAGTTGATGAAGGAG AAAGGGATCCAAACTACTCCTGGCTGCACGACAGTAGAACTGAACGGCGAGATCCATGAA TTTATTGCAGCTGATGCTTCACATCCAAGAAAGGCAGAGATTTATGAAAAGCTTGATGAG ATAAACAAACATCTTAGAATAGCTGGTTATGTTCCTAACGTGTCGTCGGAGTTGCATGAT TTGGATTCTGAGGGGAAGGAATGCGCCCTCGCATATCACAGTGAAAAGCTAGCAATTGCT TTTGCTCTTCTTGTGACACCACAGCATAGACCAATAAGGCTTGCTAAGAATCTTCGTGTT TGTGTAGACTGCCACAATTTCACAAAGGTATTCTCTGGTGTATATCATCGCTTAGTGATT GTCAGAGACAGAACCCGATTCCATCATTTCAAGGAATTCCAGTGTTCGTGTAATGATTAT TGGTAGTCCACCATTTCTTTCCTGTGCATTTATGCTGATTACAAAGGATATAAAGTGTTT GCACACAGTGAATATCAGAGCTTCGTTGAGTGCTGGAATTGATGATATTGGCATGAGATG CAAGATTACATCAGTTGTGTATGCAGTCAGACATGTCACATGATCTATCTGGACACAAGG ACCAGATCTCAACAAAAACTATCTAAAACACCAGGTCATTAAGATTGCATCACTGCCTTA TGAAGAACATGATCTTCCCTAGAACAGCAATGTGTTGAGGTTTGGGCAGTGTTCAGTTAT CAGGTTCATTTATACATTATTGCTTATTTGAACCTACAAAAAACGTAACACCATAAAGAA TATCCTTGGCCAGAAGCAGAAAGGAAACTAATGATGAATTATAGCAATTCCTTGCTAGTC TGTCACACAAGGTTTCATTGGCAAGCACCTGCACATTGGGCTTCAAAGCTTAAGGAACAT ACACTTTCCACCTCTTAAGATACTGTTAGATGTGTTGATCTCTCAGCAGAGATTAGTAAT GATCAATATTTGTACAACTTGAGAAATGAAGCATCACTATCAATTTTCATGGTGGTGATG ATGATTCTAGTTGAGAACAAGCCAGTCAACCTTAATGTCCACGACTCAGTTGTTCAAGGA TTATTAACAGTATATATTTAAGAGAGCAATAGTGAAATACAAGGTGCACGAGTGAATGCC TATCTCGGTAAGGCTAGTGACTGTTGTTTTTTCTTTTACAACAGCCGATCTCTACAATGA CTTGTTTGATGAATTTATCTTTGTTGACGTGATGGTCGAAGGCTCTCTAATAAAATTGCA GGAGAAGCATTAGTTTCACATTTAATGTGATAAAAGAGAGTATATCTTCTTAGTTCATAT AATAGGAATAATGGGACCATGTCCAGGCACCAGCTATCCCTGCGGCTCTGCAAAACTCAT GATTTTGTAGTGCACCTTTCTTTGATGTTGGAACTTGGAACCAACTGATGGCTCTCAAGT CTGAACAGTGTCCTATCCATGACAGGCATCTAGGATTTCTAGTGGAATATCCCAATGGAA GTTCCTTTTGGCATGTTCTGATTTGGCGCTCCATCAATCCTCGACGCAAACATGTATCCT TCGTTTGCTAATCAGACCTGGCTATTCTTCTGCACATCAATTATTTTAGTTGATTTGTAC AATGAAATTGATGATCAACCAAGCGCTTTCAAGACCATTTTTTTTAAGGACGTTGATTCT CTTCTGAATAAGTCTTATCGATTAGGTGCGCTTAATTTCTTTATTGCTGATATTATACCA TTGGATTACGCAATACAAGAAGATGCGTGCATCATGTATATGAGTCTATGACCGAGTTTG TTCCCACTAGCTCTCTTATGTTGATGTTGATGTTTGCATGGCATTTTGGTTCCCTTTTAT TTCATCTTGTCAAGTGTATACTGCTGTTTAGCTGGTGAGAGTTTCTTTAAGCATAGATTT GACGAATGGAAGATGCATCAAGCAAATGTCACATCTGACAAAAGACTTGGCTTCTCCGGT TGAACATATACAAAACCAAGCAACAACAACAACC