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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os08t0428800-00
CDS Infomation

cds chromosome:IRGSP-1.0:8:20657025:20658055:-1 gene:Os08g0428800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to High mobility group I/Y-2. (Os08t0428800-00)
Sequence

ATGGCCGCCGCCGACGAAGCCTCCAAGCCGCCGCCTCTCCCGCCCTACCCGGAGATGATA
CTGGCGGCGATCGAGGGGCTGAACGAGAAGAGCGGGTCGAACAAGTCGGCGATCTCCAAG
TTCATCGAGGGGAAGTACGGGGACCTGCCGCCGGCGCACGCGTCGCTGCTCACGGCGCAC
CTGGCCAGGATGAAGGAGTCCGGTGAGCTCATCTTCCTCAAGAACAACTACTTCCGCGCC
GACGCGCCCGACGCGCCGCCCAAGCGCGGCCGGGGCCGCCCCCCCAAGCCGCGGGACCCC
AACGCGCCGCCGCCGCCGCCCAAGCCCTCCTCGCCGCGCCCCCGCGGCCGCCCGCCCAAG
TCCAAGGACCCCATCTCCGACGCCATCCCCAAGTCCCGCGGCCGCCCGCCCAAGAAGGCC
AAGACGGCTCCCGCCCCTCCTCCCGCCGCCGGCGACGGCTCCGCTCCCGTCAAGCGCGGC
CGCGGCCGGCCACCCAAGGTACGCCCCGCCGTCCCCAGCGAGGCGGCGGCGGCCTGA

Peptide Sequence

PEP ID

Os08t0428800-00
PEP Infomation

pep chromosome:IRGSP-1.0:8:20657025:20658055:-1 gene:Os08g0428800 transcript:Os08t0428800-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to High mobility group I/Y-2. (Os08t0428800-00)
Sequence

MAAADEASKPPPLPPYPEMILAAIEGLNEKSGSNKSAISKFIEGKYGDLPPAHASLLTAH
LARMKESGELIFLKNNYFRADAPDAPPKRGRGRPPKPRDPNAPPPPPKPSSPRPRGRPPK
SKDPISDAIPKSRGRPPKKAKTAPAPPPAAGDGSAPVKRGRGRPPKVRPAVPSEAAAA

Transcript Sequence

Transcript ID

Os08t0428800-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:8:20657025:20658055:-1 gene:Os08g0428800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to High mobility group I/Y-2. (Os08t0428800-00)
Sequence

CTCCTCCATATTTTCTTATCTATTCCTGATCCAAATCCATCTCTCTCTTCTTCATATATC
CTCCTCTTCGTGAGCGAAAATTCCCCATCCCCATCTCCCCCACCCCCTCCTCCTCCTCCG
CCATGGCCGCCGCCGACGAAGCCTCCAAGCCGCCGCCTCTCCCGCCCTACCCGGAGATGA
TACTGGCGGCGATCGAGGGGCTGAACGAGAAGAGCGGGTCGAACAAGTCGGCGATCTCCA
AGTTCATCGAGGGGAAGTACGGGGACCTGCCGCCGGCGCACGCGTCGCTGCTCACGGCGC
ACCTGGCCAGGATGAAGGAGTCCGGTGAGCTCATCTTCCTCAAGAACAACTACTTCCGCG
CCGACGCGCCCGACGCGCCGCCCAAGCGCGGCCGGGGCCGCCCCCCCAAGCCGCGGGACC
CCAACGCGCCGCCGCCGCCGCCCAAGCCCTCCTCGCCGCGCCCCCGCGGCCGCCCGCCCA
AGTCCAAGGACCCCATCTCCGACGCCATCCCCAAGTCCCGCGGCCGCCCGCCCAAGAAGG
CCAAGACGGCTCCCGCCCCTCCTCCCGCCGCCGGCGACGGCTCCGCTCCCGTCAAGCGCG
GCCGCGGCCGGCCACCCAAGGTACGCCCCGCCGTCCCCAGCGAGGCGGCGGCGGCCTGAC
CAACCCCAATCTCTAGGGTTAGGGTTAGGGCGTAGTGGCATCGAATTGGGGGGGGGGGGG
GCGAGATGGGGTTTGTTAATTACTTCTTCTTAATCTTAATCTCTCTTAGGCTTCGCTTCC
TTTAATTTCCTCTAATTGTTGTGCTCTTAGTACAATTAATCGGGTAATTAGGCTTAATCA
TGTTGCTGCTGCTGCTTATGTGTTGTTGTTGTAAGATTAAGGCTGAGCTAGGCTTCTCCT
CCTGCTCCTGCTGATGCTGCTGAGTGGATTAATTAAGCTAAGCTAATGTGGATGATGATG
TGT